NO08G01810.1, NO08G01810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01810.1
Unique NameNO08G01810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length753
Alignment locationchr8:555790..556542 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:555790..556542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01810.1 vs.
Match: EWM26698.1 (Zn(2)-C6 fungal-type DNA-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 105.5 bits (262), Expect = 2.400e-19
Identity = 107/273 (39.19%), Postives = 141/273 (51.65%), Query Frame = 0 
Query:    1 MRHGGSSSKNSSNSS-GLNLQGNEETSVEDDDTSASARSGSSSSSSPYSSGGGHNNRSSSHYHQHRQNQQHYEEHEQQQQHTELSSLLIPSERNATAAAMAGRVFSSYSLAEDGSESRRPVISPSCMVYGGAQQVVGGDVG------------NSSGSSRQQ-QQQLWIGAMEDAWWVGSGPGGSEPGANASTCSDIQAPSG--SIGNGEGQEQEVG-DRAMKRAYSSLEGGEEEQQQLGRA------ATAEEGAQARAVEREEMLHFLQEYF 251
            MR G S+S NSS++S GLNLQGN E   EDDDTSASARS +SS  S +SS   H+     H    +   +  +E E Q++   LS   +    NA+AAAMAGRV  SY  + +  E  +  +SPS  VYGGAQQV GG+V             N  G  ++Q  Q  W+  +ED WWV +GP   E           +AP+G  ++  GEG    +G D  +    +   GG+ +    G          A  G  ARA ER+EMLHFL+EYF
Sbjct:  705 MRRGASTSSNSSSTSDGLNLQGNAEGQGEDDDTSASARSTTSSDFSSFSS---HHRDQQQHPRHPQPPLRQQDEVEGQKRPRHLSPPFLVHGANASAAAMAGRVSGSYPGSGEAGEG-KAALSPSNTVYGGAQQVKGGEVSVLHSNNGQRHAQNPEGIEKEQLSQPSWLRGVEDTWWVSAGPHDLE-----------RAPAGLPTLEAGEGMPHGMGTDAKIPPTATDAAGGDGQHGGGGEGPLESALTDALAGENARATERDEMLHFLEEYF 962
The following BLAST results are available for this feature:
BLAST of NO08G01810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26698.12.400e-1939.19Zn(2)-C6 fungal-type DNA-binding protein [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01810NO08G01810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01810.1NO08G01810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01810.1.cds1NO08G01810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01810.1 ID=NO08G01810.1|Name=NO08G01810.1|organism=Nannochloropsis oceanica|type=mRNA|length=753bp
ATGAGGCATGGGGGGAGCAGCAGCAAAAACAGCAGCAACAGCAGTGGGCT
GAATTTGCAAGGGAACGAGGAGACATCCGTGGAAGATGATGATACTTCCG
CCTCGGCTCGCTCTGGCAGTAGTAGCAGCAGCAGCCCCTACTCCAGCGGT
GGTGGCCATAATAATCGTTCCTCCTCCCACTACCATCAACACCGGCAGAA
CCAGCAGCACTATGAAGAGCACGAGCAACAGCAGCAGCACACAGAATTAT
CTAGCCTGCTCATTCCGAGTGAAAGGAATGCGACGGCGGCTGCAATGGCG
GGACGGGTCTTTAGCAGCTACTCCCTGGCAGAAGACGGGAGCGAGAGTCG
CAGGCCCGTTATATCTCCTTCTTGCATGGTCTATGGAGGAGCCCAACAAG
TTGTTGGGGGAGATGTGGGCAATAGCAGTGGCAGCAGCAGGCAGCAGCAG
CAGCAGCTGTGGATAGGCGCGATGGAGGATGCCTGGTGGGTTGGGAGTGG
GCCGGGCGGGAGTGAGCCTGGTGCCAACGCGAGCACGTGTAGCGATATAC
AGGCACCGAGTGGTAGCATTGGTAATGGAGAGGGACAAGAACAAGAAGTA
GGTGATCGAGCGATGAAGCGAGCTTATTCTTCCTTGGAGGGAGGAGAGGA
GGAGCAACAGCAGCTGGGAAGGGCGGCGACGGCGGAGGAGGGTGCGCAGG
CTCGGGCGGTGGAGCGAGAGGAGATGTTGCATTTTTTGCAGGAGTACTTT
TAG
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protein sequence of NO08G01810.1

>NO08G01810.1-protein ID=NO08G01810.1-protein|Name=NO08G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MRHGGSSSKNSSNSSGLNLQGNEETSVEDDDTSASARSGSSSSSSPYSSG
GGHNNRSSSHYHQHRQNQQHYEEHEQQQQHTELSSLLIPSERNATAAAMA
GRVFSSYSLAEDGSESRRPVISPSCMVYGGAQQVVGGDVGNSSGSSRQQQ
QQLWIGAMEDAWWVGSGPGGSEPGANASTCSDIQAPSGSIGNGEGQEQEV
GDRAMKRAYSSLEGGEEEQQQLGRAATAEEGAQARAVEREEMLHFLQEYF
*
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mRNA from alignment at chr8:555790..556542-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01810.1 ID=NO08G01810.1|Name=NO08G01810.1|organism=Nannochloropsis oceanica|type=mRNA|length=753bp|location=Sequence derived from alignment at chr8:555790..556542- (Nannochloropsis oceanica)
ATGAGGCATGGGGGGAGCAGCAGCAAAAACAGCAGCAACAGCAGTGGGCT
GAATTTGCAAGGGAACGAGGAGACATCCGTGGAAGATGATGATACTTCCG
CCTCGGCTCGCTCTGGCAGTAGTAGCAGCAGCAGCCCCTACTCCAGCGGT
GGTGGCCATAATAATCGTTCCTCCTCCCACTACCATCAACACCGGCAGAA
CCAGCAGCACTATGAAGAGCACGAGCAACAGCAGCAGCACACAGAATTAT
CTAGCCTGCTCATTCCGAGTGAAAGGAATGCGACGGCGGCTGCAATGGCG
GGACGGGTCTTTAGCAGCTACTCCCTGGCAGAAGACGGGAGCGAGAGTCG
CAGGCCCGTTATATCTCCTTCTTGCATGGTCTATGGAGGAGCCCAACAAG
TTGTTGGGGGAGATGTGGGCAATAGCAGTGGCAGCAGCAGGCAGCAGCAG
CAGCAGCTGTGGATAGGCGCGATGGAGGATGCCTGGTGGGTTGGGAGTGG
GCCGGGCGGGAGTGAGCCTGGTGCCAACGCGAGCACGTGTAGCGATATAC
AGGCACCGAGTGGTAGCATTGGTAATGGAGAGGGACAAGAACAAGAAGTA
GGTGATCGAGCGATGAAGCGAGCTTATTCTTCCTTGGAGGGAGGAGAGGA
GGAGCAACAGCAGCTGGGAAGGGCGGCGACGGCGGAGGAGGGTGCGCAGG
CTCGGGCGGTGGAGCGAGAGGAGATGTTGCATTTTTTGCAGGAGTACTTT
TAG
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Coding sequence (CDS) from alignment at chr8:555790..556542-

>NO08G01810.1 ID=NO08G01810.1|Name=NO08G01810.1|organism=Nannochloropsis oceanica|type=CDS|length=753bp|location=Sequence derived from alignment at chr8:555790..556542- (Nannochloropsis oceanica)
ATGAGGCATGGGGGGAGCAGCAGCAAAAACAGCAGCAACAGCAGTGGGCT
GAATTTGCAAGGGAACGAGGAGACATCCGTGGAAGATGATGATACTTCCG
CCTCGGCTCGCTCTGGCAGTAGTAGCAGCAGCAGCCCCTACTCCAGCGGT
GGTGGCCATAATAATCGTTCCTCCTCCCACTACCATCAACACCGGCAGAA
CCAGCAGCACTATGAAGAGCACGAGCAACAGCAGCAGCACACAGAATTAT
CTAGCCTGCTCATTCCGAGTGAAAGGAATGCGACGGCGGCTGCAATGGCG
GGACGGGTCTTTAGCAGCTACTCCCTGGCAGAAGACGGGAGCGAGAGTCG
CAGGCCCGTTATATCTCCTTCTTGCATGGTCTATGGAGGAGCCCAACAAG
TTGTTGGGGGAGATGTGGGCAATAGCAGTGGCAGCAGCAGGCAGCAGCAG
CAGCAGCTGTGGATAGGCGCGATGGAGGATGCCTGGTGGGTTGGGAGTGG
GCCGGGCGGGAGTGAGCCTGGTGCCAACGCGAGCACGTGTAGCGATATAC
AGGCACCGAGTGGTAGCATTGGTAATGGAGAGGGACAAGAACAAGAAGTA
GGTGATCGAGCGATGAAGCGAGCTTATTCTTCCTTGGAGGGAGGAGAGGA
GGAGCAACAGCAGCTGGGAAGGGCGGCGACGGCGGAGGAGGGTGCGCAGG
CTCGGGCGGTGGAGCGAGAGGAGATGTTGCATTTTTTGCAGGAGTACTTT
TAG
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Synonyms
Publications