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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:546190..548252 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G01780.1 vs.
Match: EWM26683.1 (zinc transporter [Nannochloropsis gaditana]) HSP 1 Score: 434.9 bits (1117), Expect = 3.500e-118 Identity = 280/496 (56.45%), Postives = 339/496 (68.35%), Query Frame = 0
Query: 19 LPVLLLVLPGLVTAVHEAHVCLDHNHARGSSDTACASQNSHQHERPPTSHSSP-PEVASGLWIHKHLPKGEWAKAFGATGIISIFPTLVLPFVPLTHSVNGIISLNEGMHKLLLSFAAGGLLGEVFLHSLPHLLEHHDHFSSS------SSNSTSSRDQYQEHAENEEDAHDDHRHSHAHGSGVRLDEGEVMRICMWILAGFLLFFVSEKVVTVILGD-DGGHSHSDSYRHSHTHSHAAHGKKSKSSAASSEDEEEEEEDVEGEEGEEDFSIDSEGRRRRSPRIRERYSRPERRQIATVAAATAAGGRTNGGIHRRQLSSSSPNKGQQRHVTVATGGEGGLKASGYLNIVVDVLHNLTDGIAIGASFASGQGVGLATTLSVFLHEVPHEIGDFAILVQSGLSVRNAFLMQFFTAIAAFLGTFLGLVAKRQLGLERILLALTTGGFLYVACVSVLPELLAGEGKGRRKGGQAVREVGGVVAGIGLMAWVAMGE-HGH 506
L V L L GL A+H AH +N +AC + SH R +H P +A+ + + LP GEWAKAFGAT +ISIFPTL+LPF+PL V+G+ SL+E +H+LLLSFA GGLLGEVFLHSLPHLLE HDHF SS S + + D+ + EE H + GVR DEGE +R+ M +LAGFLLFF+SEKVV ++LG+ DGGH H ++ HT H G + E+E E+EE +GEE E+ DS RRRSPRIRERYS ERRQ+ AAA AGG TNGG + L+ ++ K R G LK+SGYLN+V+DVLHNLTDG+AIGASFASG GVG+ATT+SVFLHE+PHEIGDFAILVQSGLSV++AFL+QF TA+AAF+GT LGLVAKRQ GLER++LALTTGGFLYVA VSVLPELLA G+ G Q++REVGGVV GIGLMAWVA+GE H H
Sbjct: 8 LSVFLFALFGLKWAIH-AHPVQGNNDCEAWESSACLA--SHNFGR---NHGFELPFIAANSFSNHTLPAGEWAKAFGATAVISIFPTLILPFIPLVSFVDGVPSLHEDLHRLLLSFATGGLLGEVFLHSLPHLLERHDHFGSSHGHHHHSVGTACTLDKTKAECCREEQEHHEK-------DGVRGDEGEALRVSMHVLAGFLLFFISEKVVKLLLGEEDGGHIHGHNHG-KHTTLHINKGMVNGEIEGEREEEMEQEE--QGEEEEDQDWSDSHKLRRRSPRIRERYSNQERRQMREAAAA--AGG-TNGGHGMKALAPTAKRKDVPRLGGCGRKGTTALKSSGYLNVVIDVLHNLTDGVAIGASFASGHGVGVATTISVFLHEIPHEIGDFAILVQSGLSVQSAFLLQFCTAVAAFIGTLLGLVAKRQEGLERLVLALTTGGFLYVATVSVLPELLA----GKPGGAQSLREVGGVVGGIGLMAWVALGEAHAH 480
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G01780.1 ID=NO08G01780.1|Name=NO08G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2063bp AATAGGACGACGGGGTACCCACTGTGTGTCTCCATATTATTTGCCCAAGC TCAAGCCACGCCCCAGCCAGCGTCATCATCATGTCCTACAGGAGGATGCG ACCCATGCGGCCCCTCTTGAGCTCGCATGTCCTCCTTCCTGTCCTGCTCT TGGTGCTACCAGGTTTGGTGACTGCTGTGCACGAAGCGCATGTATGCTTG GATCATAACCATGCACGAGGGTCCTCTGACACTGCTTGCGCATCTCAGAA CTCCCACCAACACGAGCGCCCTCCCACTTCACACTCGTCGCCTCCGGAAG TCGCCTCCGGACTGTGGATCCACAAGCATCTTCCCAAAGGGGAATGGGCG AAAGCCTTTGGTGCTACCGGTATCATAAGCATCTTTCCCACTCTAGTGCT TCCCTTTGTCCCCCTCACCCACTCCGTCAATGGCATCATCTCCTTGAATG AGGGCATGCATAAACTTTTGCTCAGTTTCGCCGCTGGAGGCCTGCTTGGC GAGGTATTCTTGCATTCCTTGCCGCATTTGCTCGAGCACCACGACCATTT CAGTAGTAGCAGCAGCAATAGCACAAGTAGTCGCGACCAGTACCAAGAGC ACGCGGAGAACGAGGAGGACGCGCACGACGACCATAGGCACTCGCATGCA CACGGCAGCGGCGTGAGATTGGATGAGGGGGAGGTTATGCGGATTTGTAT GTGGATTTTGGCGGGCTTCCTTCTCTTCTTTGTATCGGAGAAGGTAGTCA CAGTTATCCTGGGCGATGATGGAGGGCATTCACACAGCGACAGTTACAGA CACTCACACACTCATTCTCACGCCGCTCATGGCAAAAAATCAAAGTCAAG CGCTGCATCAAGCGAAGATGAAGAAGAGGAGGAAGAAGACGTAGAGGGAG AGGAAGGAGAGGAGGACTTCTCAATTGACTCTGAAGGTCGGCGCCGGCGA AGCCCCCGCATCCGAGAGCGGTACTCACGCCCTGAACGAAGGCAAATAGC AACAGTAGCAGCAGCAACAGCAGCGGGGGGTCGTACCAACGGCGGAATTC ACCGGCGACAGCTTTCTTCTTCATCACCGAACAAAGGGCAGCAGCGGCAT GTGACCGTAGCAACAGGAGGAGAGGGAGGGTTGAAGGCAAGCGGGTACCT CAACATCGTGGTTGATGTGCTGCACAATCTCACAGACGGCATCGCCATCG GTGCCTCGTTTGCCTCGGGTCAAGGGGTTGGATTAGCCACCACCCTATCA GTGTTTCTCCATGAGGTCCCGCACGAGATAGGAGATTTTGCTATTTTGGT TCAATCTGGTCTGAGTGTACGGAATGCTTTCTTGATGCAATTTTTTACTG CTATTGCTGCTTTCCTCGGTACATTTTTGGGATTAGTGGCCAAGAGACAG TTAGGATTGGAGCGGATATTGCTGGCGCTGACGACGGGAGGTTTTTTGTA TGTGGCGTGTGTGTCGGTGTTGCCGGAGTTGCTGGCAGGGGAAGGGAAGG GAAGAAGAAAGGGAGGGCAGGCGGTGAGGGAGGTGGGAGGGGTGGTGGCT GGAATAGGGCTGATGGCTTGGGTGGCGATGGGCGAGCACGGGCATGAACA TTGATGAGAAGGGAGAGACAGACGAGGAAGAAGGTAGGATGAAGAAAAGG AAGAGAAGGAGGAGCAGCATTGAGTTGAAGAGAGAGTTCCACGCCCGAGC CGCGCAGTAGATAGGAGGAAAGACGCCGCTCATTTTGCTTCTTTTCTTGA GTTGGCCGACATGCCAGTCAGAAAGCGAAAGTGGAGAGTGTTGTTAGTTA GATTCAGTGGGATTAAAAGCAGCAGAAGCAGTAGAAGTAGAAGATGACGA AGATAGGAAGAGTGGAGAAATGAAAAGGAACGTGCAATGCAAGCAGGGAT AATGTACACACATACACACACCTGTACAGGGGAACGAGAGACCGAAAGGC GGCGGCAACAAGTCTTGTGTGTGATTTAATTCACTTGTAGTTGAAAGACG AGAAGAAATGAGAGGAGCCCTACACCAACCAAAAAAAGAGCACGGATCAA GAGCAATGTTGGA back to topprotein sequence of NO08G01780.1 >NO08G01780.1-protein ID=NO08G01780.1-protein|Name=NO08G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=508bp MSYRRMRPMRPLLSSHVLLPVLLLVLPGLVTAVHEAHVCLDHNHARGSSD TACASQNSHQHERPPTSHSSPPEVASGLWIHKHLPKGEWAKAFGATGIIS IFPTLVLPFVPLTHSVNGIISLNEGMHKLLLSFAAGGLLGEVFLHSLPHL LEHHDHFSSSSSNSTSSRDQYQEHAENEEDAHDDHRHSHAHGSGVRLDEG EVMRICMWILAGFLLFFVSEKVVTVILGDDGGHSHSDSYRHSHTHSHAAH GKKSKSSAASSEDEEEEEEDVEGEEGEEDFSIDSEGRRRRSPRIRERYSR PERRQIATVAAATAAGGRTNGGIHRRQLSSSSPNKGQQRHVTVATGGEGG LKASGYLNIVVDVLHNLTDGIAIGASFASGQGVGLATTLSVFLHEVPHEI GDFAILVQSGLSVRNAFLMQFFTAIAAFLGTFLGLVAKRQLGLERILLAL TTGGFLYVACVSVLPELLAGEGKGRRKGGQAVREVGGVVAGIGLMAWVAM GEHGHEH* back to topmRNA from alignment at chr8:546190..548252- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G01780.1 ID=NO08G01780.1|Name=NO08G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2063bp|location=Sequence derived from alignment at chr8:546190..548252- (Nannochloropsis oceanica) AATAGGACGACGGGGTACCCACTGTGTGTCTCCATATTATTTGCCCAAGC
TCAAGCCACGCCCCAGCCAGCGTCATCATCATGTCCTACAGGAGGATGCG
ACCCATGCGGCCCCTCTTGAGCTCGCATGTCCTCCTTCCTGTCCTGCTCT
TGGTGCTACCAGGTTTGGTGACTGCTGTGCACGAAGCGCATGTATGCTTG
GATCATAACCATGCACGAGGGTCCTCTGACACTGCTTGCGCATCTCAGAA
CTCCCACCAACACGAGCGCCCTCCCACTTCACACTCGTCGCCTCCGGAAG
TCGCCTCCGGACTGTGGATCCACAAGCATCTTCCCAAAGGGGAATGGGCG
AAAGCCTTTGGTGCTACCGGTATCATAAGCATCTTTCCCACTCTAGTGCT
TCCCTTTGTCCCCCTCACCCACTCCGTCAATGGCATCATCTCCTTGAATG
AGGGCATGCATAAACTTTTGCTCAGTTTCGCCGCTGGAGGCCTGCTTGGC
GAGGTATTCTTGCATTCCTTGCCGCATTTGCTCGAGCACCACGACCATTT
CAGTAGTAGCAGCAGCAATAGCACAAGTAGTCGCGACCAGTACCAAGAGC
ACGCGGAGAACGAGGAGGACGCGCACGACGACCATAGGCACTCGCATGCA
CACGGCAGCGGCGTGAGATTGGATGAGGGGGAGGTTATGCGGATTTGTAT
GTGGATTTTGGCGGGCTTCCTTCTCTTCTTTGTATCGGAGAAGGTAGTCA
CAGTTATCCTGGGCGATGATGGAGGGCATTCACACAGCGACAGTTACAGA
CACTCACACACTCATTCTCACGCCGCTCATGGCAAAAAATCAAAGTCAAG
CGCTGCATCAAGCGAAGATGAAGAAGAGGAGGAAGAAGACGTAGAGGGAG
AGGAAGGAGAGGAGGACTTCTCAATTGACTCTGAAGGTCGGCGCCGGCGA
AGCCCCCGCATCCGAGAGCGGTACTCACGCCCTGAACGAAGGCAAATAGC
AACAGTAGCAGCAGCAACAGCAGCGGGGGGTCGTACCAACGGCGGAATTC
ACCGGCGACAGCTTTCTTCTTCATCACCGAACAAAGGGCAGCAGCGGCAT
GTGACCGTAGCAACAGGAGGAGAGGGAGGGTTGAAGGCAAGCGGGTACCT
CAACATCGTGGTTGATGTGCTGCACAATCTCACAGACGGCATCGCCATCG
GTGCCTCGTTTGCCTCGGGTCAAGGGGTTGGATTAGCCACCACCCTATCA
GTGTTTCTCCATGAGGTCCCGCACGAGATAGGAGATTTTGCTATTTTGGT
TCAATCTGGTCTGAGTGTACGGAATGCTTTCTTGATGCAATTTTTTACTG
CTATTGCTGCTTTCCTCGGTACATTTTTGGGATTAGTGGCCAAGAGACAG
TTAGGATTGGAGCGGATATTGCTGGCGCTGACGACGGGAGGTTTTTTGTA
TGTGGCGTGTGTGTCGGTGTTGCCGGAGTTGCTGGCAGGGGAAGGGAAGG
GAAGAAGAAAGGGAGGGCAGGCGGTGAGGGAGGTGGGAGGGGTGGTGGCT
GGAATAGGGCTGATGGCTTGGGTGGCGATGGGCGAGCACGGGCATGAACA
TTGATGAGAAGGGAGAGACAGACGAGGAAGAAGGTAGGATGAAGAAAAGG
AAGAGAAGGAGGAGCAGCATTGAGTTGAAGAGAGAGTTCCACGCCCGAGC
CGCGCAGTAGATAGGAGGAAAGACGCCGCTCATTTTGCTTCTTTTCTTGA
GTTGGCCGACATGCCAGTCAGAAAGCGAAAGTGGAGAGTGTTGTTAGTTA
GATTCAGTGGGATTAAAAGCAGCAGAAGCAGTAGAAGTAGAAGATGACGA
AGATAGGAAGAGTGGAGAAATGAAAAGGAACGTGCAATGCAAGCAGGGAT
AATGTACACACATACACACACCTGTACAGGGGAACGAGAGACCGAAAGGC
GGCGGCAACAAGTCTTGTGTGTGATTTAATTCACTTGTAGTTGAAAGACG
AGAAGAAATGAGAGGAGCCCTACACCAACCAAAAAAAGAGCACGGATCAA
GAGCAATGTTGGA back to topCoding sequence (CDS) from alignment at chr8:546190..548252- >NO08G01780.1 ID=NO08G01780.1|Name=NO08G01780.1|organism=Nannochloropsis oceanica|type=CDS|length=1524bp|location=Sequence derived from alignment at chr8:546190..548252- (Nannochloropsis oceanica) ATGTCCTACAGGAGGATGCGACCCATGCGGCCCCTCTTGAGCTCGCATGT CCTCCTTCCTGTCCTGCTCTTGGTGCTACCAGGTTTGGTGACTGCTGTGC ACGAAGCGCATGTATGCTTGGATCATAACCATGCACGAGGGTCCTCTGAC ACTGCTTGCGCATCTCAGAACTCCCACCAACACGAGCGCCCTCCCACTTC ACACTCGTCGCCTCCGGAAGTCGCCTCCGGACTGTGGATCCACAAGCATC TTCCCAAAGGGGAATGGGCGAAAGCCTTTGGTGCTACCGGTATCATAAGC ATCTTTCCCACTCTAGTGCTTCCCTTTGTCCCCCTCACCCACTCCGTCAA TGGCATCATCTCCTTGAATGAGGGCATGCATAAACTTTTGCTCAGTTTCG CCGCTGGAGGCCTGCTTGGCGAGGTATTCTTGCATTCCTTGCCGCATTTG CTCGAGCACCACGACCATTTCAGTAGTAGCAGCAGCAATAGCACAAGTAG TCGCGACCAGTACCAAGAGCACGCGGAGAACGAGGAGGACGCGCACGACG ACCATAGGCACTCGCATGCACACGGCAGCGGCGTGAGATTGGATGAGGGG GAGGTTATGCGGATTTGTATGTGGATTTTGGCGGGCTTCCTTCTCTTCTT TGTATCGGAGAAGGTAGTCACAGTTATCCTGGGCGATGATGGAGGGCATT CACACAGCGACAGTTACAGACACTCACACACTCATTCTCACGCCGCTCAT GGCAAAAAATCAAAGTCAAGCGCTGCATCAAGCGAAGATGAAGAAGAGGA GGAAGAAGACGTAGAGGGAGAGGAAGGAGAGGAGGACTTCTCAATTGACT CTGAAGGTCGGCGCCGGCGAAGCCCCCGCATCCGAGAGCGGTACTCACGC CCTGAACGAAGGCAAATAGCAACAGTAGCAGCAGCAACAGCAGCGGGGGG TCGTACCAACGGCGGAATTCACCGGCGACAGCTTTCTTCTTCATCACCGA ACAAAGGGCAGCAGCGGCATGTGACCGTAGCAACAGGAGGAGAGGGAGGG TTGAAGGCAAGCGGGTACCTCAACATCGTGGTTGATGTGCTGCACAATCT CACAGACGGCATCGCCATCGGTGCCTCGTTTGCCTCGGGTCAAGGGGTTG GATTAGCCACCACCCTATCAGTGTTTCTCCATGAGGTCCCGCACGAGATA GGAGATTTTGCTATTTTGGTTCAATCTGGTCTGAGTGTACGGAATGCTTT CTTGATGCAATTTTTTACTGCTATTGCTGCTTTCCTCGGTACATTTTTGG GATTAGTGGCCAAGAGACAGTTAGGATTGGAGCGGATATTGCTGGCGCTG ACGACGGGAGGTTTTTTGTATGTGGCGTGTGTGTCGGTGTTGCCGGAGTT GCTGGCAGGGGAAGGGAAGGGAAGAAGAAAGGGAGGGCAGGCGGTGAGGG AGGTGGGAGGGGTGGTGGCTGGAATAGGGCTGATGGCTTGGGTGGCGATG GGCGAGCACGGGCATGAACATTGA back to top
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