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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:404582..407062 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G01340.7 vs.
Match: EWM26763.1 (enoyl- hydratase isomerase [Nannochloropsis gaditana]) HSP 1 Score: 232.3 bits (591), Expect = 2.700e-57 Identity = 112/139 (80.58%), Postives = 126/139 (90.65%), Query Frame = 0
Query: 36 SLSSSAASSPSHDPNKEPDAP--PVLVERRSVAGTHGGYLVVTLNRPRHSNAMSTAILHDLQAVFDKLPTDKWVRAVVLTGTGHAFCGGHDLYQMHDSQGDKKYFERMFAKCSRFMLSIQRVPQPVVAAVNGLATGAGK 173
SLSSSA S PS P++EP+A P+LVERR++AGT GGYL+VTLNRPRHSNAM+ A L +LQAVFD+LP DKWVRAVVLTG GHAFCGGHDLYQMHDSQGDK+YFERMFA+CSRFMLSIQRVPQPV+AAVNGLATGAG+
Sbjct: 28 SLSSSAMSPPSSPPSEEPEATTDPILVERRALAGTKGGYLLVTLNRPRHSNAMNNATLQELQAVFDRLPADKWVRAVVLTGAGHAFCGGHDLYQMHDSQGDKQYFERMFARCSRFMLSIQRVPQPVLAAVNGLATGAGR 166
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G01340.7 ID=NO08G01340.7|Name=NO08G01340.7|organism=Nannochloropsis oceanica|type=mRNA|length=1889bp CTTTGCCTGATGAAAAACCTGTCAAAGTCGCTAGTAATACTCGGACAAAA ATAAGGGGCGAATAGGCAACAATTTTTTGTTGGAAGGCTCGCCCTCGTGT GCAAGTCCTAGAGGAGGTCAGGTTGCATGCGATAGTTCTAGAGGGATGTA GGAACAGCAGAAAAAAAGAACCAAACGAGGCAAAGTTGTGATTGATTGAT GTGATTGTGATTGTGATTTTGTGATTTTGTGATGTGATCACCTCTGTGAT GTGACGTGATGTGATGTGATGTGATGTGCTCTCATCATTAAATGCGCAAG ATGGTCAGAATGAGTGCTCACAAACCATTTCCTCACGCCTAGACACTTGC GCCCGACCCACCAGCCACTACATACATCATCTACATCATAGTAACAACAA GGACAATAGTTCCCTCTTGCAACCAAGGAGCCACTCCCTGATCGTCTACG CATCTTCAACATATCAGTATATCAGTATCAGTTAGAGCTTTGTACAATTA CAAATTAGCACCATGCTACTCATGCCCCGCATCTTTCGGACTGCAGCCAG CAGTACAATTAGCGTGATTCACCGCCCAACTACGCCTCTCCTTCCCCTCC TCCCGCGCTTTTCTCTCTCACTCTCCTCCTCCGCCGCCTCCTCGCCTTCC CACGACCCAAACAAAGAACCGGATGCCCCACCCGTCCTCGTCGAGCGTAG ATCGGTCGCTGGTACCCACGGCGGTTACCTTGTCGTGACTCTCAATCGTC CCCGGCACTCCAACGCCATGAGCACAGCGATCCTTCACGACCTCCAAGCT GTTTTCGACAAACTCCCGACCGATAAGTGGGTCCGAGCTGTAGTCCTAAC GGGGACAGGACACGCCTTCTGCGGGGGGCATGACCTGTACCAAATGCACG ACTCCCAGGGCGACAAGAAGTACTTCGAGCGGATGTTCGCCAAGTGCTCG CGGTTCATGCTGTCGATCCAGAGGGTACCCCAGCCCGTGGTGGCGGCCGT TAACGGGCTAGCCACAGGCGCTGGTAAGTCTCGGCGTGTGTCTTCGTTTC ATTTGTTTAGTAAAATATTGCAGGTATTTGACTGTCACCTACCATATAAT CACTTCGTATCTCACCTCTTGAAACGTCTGTCCTTTTCTCACTCCCTCCC AACCATGCCTCCCTCCCCTCCACCAGGCTGCCAGCTTGTCGCAGCGTGTG ATCTAGCCGTGGCCTCCTCGCGGGCAGAATTTGGAACTTCCGGGGTTAAG CTCGGTTTGTTCTGCGCCACCCCCAGTGTGCCTCTGAGTCGAAACTTGTC GCGGAAACGGGCGTTTGAAATGCTCGTTACGGGAGAGTACATCAATGCGG ACAAGGCGCTGGATTGGGGTTTGGTGAACAAAGTGTGTGACCATGAGAAA TTGGATGCCGAGGTCTTGAGGCTCGTGACGGAGATTGTCAAGAACCCGGC GGTGGCGATTGCAATGGGCAAGCGTCTCTTTTATTCCCAGCTGGAAAAAT CGTCGATTGCGGGGGCATGTAAGCACTTGCTTGAAGGGAGGCAGAGGGTG GCTGAGAGGACGGGAAGAGGGATAGAAGACAGGAAGATGCTGCCAAGCTT GTCTGTGCTCTCATTTTTATATGTTCATTTTCCTTTTGCTCCTCTTCCTT CCACCCGACACTTAATTCCCAGACGACATGGCCGATTATGTAATGAGCGC GAACATGACCGAGGCTGACACAGAGGAGGGCATCGCAGCCTTTGTCGAGA AGCGACCGCCGGCGTGGGATTTGTAGAAGTTGAGAAGCGTGGTAAAATGA CGGCTATGTTTTGTGGTAGATCATCGATCGTGTGTGTGCCTGTATACAGG ATGTACAAGGGGGAGGAGGTTATAGTTTGTAGGGGGGGG back to topprotein sequence of NO08G01340.7 >NO08G01340.7-protein ID=NO08G01340.7-protein|Name=NO08G01340.7|organism=Nannochloropsis oceanica|type=polypeptide|length=402bp MLLMPRIFRTAASSTISVIHRPTTPLLPLLPRFSLSLSSSAASSPSHDPN KEPDAPPVLVERRSVAGTHGGYLVVTLNRPRHSNAMSTAILHDLQAVFDK LPTDKWVRAVVLTGTGHAFCGGHDLYQMHDSQGDKKYFERMFAKCSRFML SIQRVPQPVVAAVNGLATGAGKSRRVSSFHLFSKILQVFDCHLPYNHFVS HLLKRLSFSHSLPTMPPSPPPGCQLVAACDLAVASSRAEFGTSGVKLGLF CATPSVPLSRNLSRKRAFEMLVTGEYINADKALDWGLVNKVCDHEKLDAE VLRLVTEIVKNPAVAIAMGKRLFYSQLEKSSIAGACKHLLEGRQRVAERT GRGIEDRKMLPSLSVLSFLYVHFPFAPLPSTRHLIPRRHGRLCNEREHDR G* back to topmRNA from alignment at chr8:404582..407062- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G01340.7 ID=NO08G01340.7|Name=NO08G01340.7|organism=Nannochloropsis oceanica|type=mRNA|length=2481bp|location=Sequence derived from alignment at chr8:404582..407062- (Nannochloropsis oceanica) CTTTGCCTGATGAAAAACCTGTCAAAGTCGCTAGTAATACTCGGACAAAA
ATAAGGGGCGAATAGGCAACAATTTTTTGTTGGAAGGCTCGCCCTCGTGT
GCAAGTCCTAGAGGAGGTCAGGTTGCATGCGATAGTTCTAGAGGGATGTA
GGAACAGCAGAAAAAAAGAACCAAACGAGGCAAAGTTGTGATTGATTGAT
GTGATTGTGATTGTGATTTTGTGATTTTGTGATGTGATCACCTCTGTGAT
GTGACGTGATGTGATGTGATGTGATGTGCTCTCATCATTAAATGCGCAAG
ATGGTCAGAATGAGTGCTCACAAACCATTTCCTCACGCCTAGACACTTGC
GCCCGACCCACCAGCCACTACATACATCATCTACATCATAGTAACAACAA
GGACAATAGTTCCCTCTTGCAACCAAGGAGCCACTCCCTGATCGTCTACG
CATCTTCAACATATCAGTATATCAGTATCAGTGTAAGTGGAGAGCTAACG
TCTCTGACCCCTATCCCCCCCCTTGAAGCATCGAGACATGTTATGTCTAT
CCCACGCACGTGCACCCCCAAGAATTCGTAATGGGGTATCGCGTTATATG
CTGCGTCGGTTATATGCCAATCACCGCGCCTCCCGTCCCCCTGACACCCC
CTACCCTCCCCTTGACTCCCCCGGACACCTTGATGCCCCTCTCCTAGTCC
TCCTGTCCTCTGTCCTTCCTGCCTCCCACTCGCGCATCTCCAACAGCCCG
ATGCCAGGCATGATTTTCTATCCTGCGTCGGGTATAGAGAGATTGCAACA
GAAACTCTCTACATGACTGCTTCTGACCGCCGCAAATGCTTTGCGCCACT
ATAAGCTGACGGGGGATTGATGCAGTCACACATTCCCATTCTTACAACGA
GGCAGGCACGACTTACTTTGCCTCTATCATCTTTTTTCTGTTCTTGACTG
TCATTATCTGCCTCATTTATGATCACGATGTACAACACCATATAGGTATT
AATACTCCCTTCTTTTTTTCAACTTCAATCCAGTCCTCATCCTCGCTCCT
CTCCACCCCTCCATCTCTCCAAAGTAGAGCTTTGTACAATTACAAATTAG
CACCATGCTACTCATGCCCCGCATCTTTCGGACTGCAGCCAGCAGTACAA
TTAGCGTGATTCACCGCCCAACTACGCCTCTCCTTCCCCTCCTCCCGCGC
TTTTCTCTCTCACTCTCCTCCTCCGCCGCCTCCTCGCCTTCCCACGACCC
AAACAAAGAACCGGATGCCCCACCCGTCCTCGTCGAGCGTAGATCGGTCG
CTGGTACCCACGGCGGTTACCTTGTCGTGACTCTCAATCGTCCCCGGCAC
TCCAACGCCATGAGCACAGCGATCCTTCACGACCTCCAAGCTGTTTTCGA
CAAACTCCCGACCGATAAGTGGGTCCGAGCTGTAGTCCTAACGGGGACAG
GACACGCCTTCTGCGGGGGGCATGACCTGTACCAAATGCACGACTCCCAG
GGCGACAAGAAGTACTTCGAGCGGATGTTCGCCAAGTGCTCGCGGTTCAT
GCTGTCGATCCAGAGGGTACCCCAGCCCGTGGTGGCGGCCGTTAACGGGC
TAGCCACAGGCGCTGGTAAGTCTCGGCGTGTGTCTTCGTTTCATTTGTTT
AGTAAAATATTGCAGGTATTTGACTGTCACCTACCATATAATCACTTCGT
ATCTCACCTCTTGAAACGTCTGTCCTTTTCTCACTCCCTCCCAACCATGC
CTCCCTCCCCTCCACCAGGCTGCCAGCTTGTCGCAGCGTGTGATCTAGCC
GTGGCCTCCTCGCGGGCAGAATTTGGAACTTCCGGGGTTAAGCTCGGTTT
GTTCTGCGCCACCCCCAGTGTGCCTCTGAGTCGAAACTTGTCGCGGAAAC
GGGCGTTTGAAATGCTCGTTACGGGAGAGTACATCAATGCGGACAAGGCG
CTGGATTGGGGTTTGGTGAACAAAGTGTGTGACCATGAGAAATTGGATGC
CGAGGTCTTGAGGCTCGTGACGGAGATTGTCAAGAACCCGGCGGTGGCGA
TTGCAATGGGCAAGCGTCTCTTTTATTCCCAGCTGGAAAAATCGTCGATT
GCGGGGGCATGTAAGCACTTGCTTGAAGGGAGGCAGAGGGTGGCTGAGAG
GACGGGAAGAGGGATAGAAGACAGGAAGATGCTGCCAAGCTTGTCTGTGC
TCTCATTTTTATATGTTCATTTTCCTTTTGCTCCTCTTCCTTCCACCCGA
CACTTAATTCCCAGACGACATGGCCGATTATGTAATGAGCGCGAACATGA
CCGAGGCTGACACAGAGGAGGGCATCGCAGCCTTTGTCGAGAAGCGACCG
CCGGCGTGGGATTTGTAGAAGTTGAGAAGCGTGGTAAAATGACGGCTATG
TTTTGTGGTAGATCATCGATCGTGTGTGTGCCTGTATACAGGATGTACAA
GGGGGAGGAGGTTATAGTTTGTAGGGGGGGG back to topCoding sequence (CDS) from alignment at chr8:404582..407062- >NO08G01340.7 ID=NO08G01340.7|Name=NO08G01340.7|organism=Nannochloropsis oceanica|type=CDS|length=1206bp|location=Sequence derived from alignment at chr8:404582..407062- (Nannochloropsis oceanica) ATGCTACTCATGCCCCGCATCTTTCGGACTGCAGCCAGCAGTACAATTAG CGTGATTCACCGCCCAACTACGCCTCTCCTTCCCCTCCTCCCGCGCTTTT CTCTCTCACTCTCCTCCTCCGCCGCCTCCTCGCCTTCCCACGACCCAAAC AAAGAACCGGATGCCCCACCCGTCCTCGTCGAGCGTAGATCGGTCGCTGG TACCCACGGCGGTTACCTTGTCGTGACTCTCAATCGTCCCCGGCACTCCA ACGCCATGAGCACAGCGATCCTTCACGACCTCCAAGCTGTTTTCGACAAA CTCCCGACCGATAAGTGGGTCCGAGCTGTAGTCCTAACGGGGACAGGACA CGCCTTCTGCGGGGGGCATGACCTGTACCAAATGCACGACTCCCAGGGCG ACAAGAAGTACTTCGAGCGGATGTTCGCCAAGTGCTCGCGGTTCATGCTG TCGATCCAGAGGGTACCCCAGCCCGTGGTGGCGGCCGTTAACGGGCTAGC CACAGGCGCTGGTAAGTCTCGGCGTGTGTCTTCGTTTCATTTGTTTAGTA AAATATTGCAGGTATTTGACTGTCACCTACCATATAATCACTTCGTATCT CACCTCTTGAAACGTCTGTCCTTTTCTCACTCCCTCCCAACCATGCCTCC CTCCCCTCCACCAGGCTGCCAGCTTGTCGCAGCGTGTGATCTAGCCGTGG CCTCCTCGCGGGCAGAATTTGGAACTTCCGGGGTTAAGCTCGGTTTGTTC TGCGCCACCCCCAGTGTGCCTCTGAGTCGAAACTTGTCGCGGAAACGGGC GTTTGAAATGCTCGTTACGGGAGAGTACATCAATGCGGACAAGGCGCTGG ATTGGGGTTTGGTGAACAAAGTGTGTGACCATGAGAAATTGGATGCCGAG GTCTTGAGGCTCGTGACGGAGATTGTCAAGAACCCGGCGGTGGCGATTGC AATGGGCAAGCGTCTCTTTTATTCCCAGCTGGAAAAATCGTCGATTGCGG GGGCATGTAAGCACTTGCTTGAAGGGAGGCAGAGGGTGGCTGAGAGGACG GGAAGAGGGATAGAAGACAGGAAGATGCTGCCAAGCTTGTCTGTGCTCTC ATTTTTATATGTTCATTTTCCTTTTGCTCCTCTTCCTTCCACCCGACACT TAATTCCCAGACGACATGGCCGATTATGTAATGAGCGCGAACATGACCGA GGCTGA back to top
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