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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr8 | genome | chr8:404582..407062 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G01340.6 vs.
Match: WP_054152361.1 (enoyl-CoA hydratase [beta proteobacterium AAP51]; KPF59934.1 enoyl-CoA hydratase [beta proteobacterium AAP51]) HSP 1 Score: 240.0 bits (611), Expect = 1.100e-59 Identity = 123/207 (59.42%), Postives = 151/207 (72.95%), Query Frame = 0
Query: 71 GYLVVTLNRPRHSNAMSTAILHDLQAVFDKLPTDKWVRAVVLTGTGHAFCGGHDLYQMHDSQGDKKYFERMFAKCSRFMLSIQRVPQPVVAAVNGLATGAGCQLVAACDLAVASSRAEFGTSGVKLGLFCATPSVPLSRNLSRKRAFEMLVTGEYINADKALDWGLVNKVCDHEKLDAEVLRLVTEIVKNPAVAIAMGKRLFYSQLE 278
G + +TLNRP NA+S ++ LQA D + D+ VR VVL G AFC GHDL +M ++ + Y+ER+FA+C R M+S+Q++P PVVA V GLAT AGCQLVA CDLAVAS A F SGV LGLFC+TPSV LSRNLSRK AFEMLVTG++I+A++A + GLVN+V D +LDAEV RLV I P VA+AMGK LFY QLE
Sbjct: 15 GVVTLTLNRPLAFNALSEGLIEALQAALDAVARDEQVRVVVLAAAGKAFCAGHDLKEMR-AEPSQAYYERLFAQCGRMMMSLQQLPVPVVARVQGLATAAGCQLVAMCDLAVASREARFAVSGVNLGLFCSTPSVALSRNLSRKAAFEMLVTGDFISAEQAREQGLVNRVVDAAELDAEVARLVERIAAKPRVALAMGKALFYRQLE 220
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G01340.6 ID=NO08G01340.6|Name=NO08G01340.6|organism=Nannochloropsis oceanica|type=mRNA|length=2328bp
CTTTGCCTGATGAAAAACCTGTCAAAGTCGCTAGTAATACTCGGACAAAA
ATAAGGGGCGAATAGGCAACAATTTTTTGTTGGAAGGCTCGCCCTCGTGT
GCAAGTCCTAGAGGAGGTCAGGTTGCATGCGATAGTTCTAGAGGGATGTA
GGAACAGCAGAAAAAAAGAACCAAACGAGGCAAAGTTGTGATTGATTGAT
GTGATTGTGATTGTGATTTTGTGATTTTGTGATGTGATCACCTCTGTGAT
GTGACGTGATGTGATGTGATGTGATGTGCTCTCATCATTAAATGCGCAAG
ATGGTCAGAATGAGTGCTCACAAACCATTTCCTCACGCCTAGACACTTGC
GCCCGACCCACCAGCCACTACATACATCATCTACATCATAGTAACAACAA
GGACAATAGTTCCCTCTTGCAACCAAGGAGCCACTCCCTGATCGTCTACG
CATCTTCAACATATCAGTATATCAGTATCAGTGTAAGTGGAGAGCTAACG
TCTCTGACCCCTATCCCCCCCCTTGAAGCATCGAGACATGTTATGTCTAT
CCCACGCACGTGCACCCCCAAGAATTCGTAATGGGGTATCGCGTTATATG
CTGCGTCGGTTATATGCCAATCACCGCGCCTCCCGTCCCCCTGACACCCC
CTACCCTCCCCTTGACTCCCCCGGACACCTTGATGCCCCTCTCCTAGTCC
TCCTGTCCTCTGTCCTTCCTGCCTCCCACTCGCGCATCTCCAACAGCCCG
ATGCCAGGCATGATTTTCTATCCTGCGTCGGGTATAGAGAGATTGCAACA
GAAACTCTCTACATGACTGCTTCTGACCGCCGCAAATGCTTTGCGCCACT
ATAAGCTGACGGGGGATTGATGCAGTCACACATTCCCATTCTTACAACGA
GGCAGGCACGACTTACTTTGCCTCTATCATCTTTTTTCTGTTCTTGACTG
TCATTATCTGCCTCATTTATGATCACGATGTACAACACCATATAGGTATT
AATACTCCCTTCTTTTTTTCAACTTCAATCCAGTCCTCATCCTCGCTCCT
CTCCACCCCTCCATCTCTCCAAAGTAGAGCTTTGTACAATTACAAATTAG
CACCATGCTACTCATGCCCCGCATCTTTCGGACTGCAGCCAGCAGTACAA
TTAGCGTGATTCACCGCCCAACTACGCCTCTCCTTCCCCTCCTCCCGCGC
TTTTCTCTCTCACTCTCCTCCTCCGCCGCCTCCTCGCCTTCCCACGACCC
AAACAAAGAACCGGATGCCCCACCCGTCCTCGTCGAGCGTAGATCGGTCG
CTGGTACCCACGGCGGTTACCTTGTCGTGACTCTCAATCGTCCCCGGCAC
TCCAACGCCATGAGCACAGCGATCCTTCACGACCTCCAAGCTGTTTTCGA
CAAACTCCCGACCGATAAGTGGGTCCGAGCTGTAGTCCTAACGGGGACAG
GACACGCCTTCTGCGGGGGGCATGACCTGTACCAAATGCACGACTCCCAG
GGCGACAAGAAGTACTTCGAGCGGATGTTCGCCAAGTGCTCGCGGTTCAT
GCTGTCGATCCAGAGGGTACCCCAGCCCGTGGTGGCGGCCGTTAACGGGC
TAGCCACAGGCGCTGGCTGCCAGCTTGTCGCAGCGTGTGATCTAGCCGTG
GCCTCCTCGCGGGCAGAATTTGGAACTTCCGGGGTTAAGCTCGGTTTGTT
CTGCGCCACCCCCAGTGTGCCTCTGAGTCGAAACTTGTCGCGGAAACGGG
CGTTTGAAATGCTCGTTACGGGAGAGTACATCAATGCGGACAAGGCGCTG
GATTGGGGTTTGGTGAACAAAGTGTGTGACCATGAGAAATTGGATGCCGA
GGTCTTGAGGCTCGTGACGGAGATTGTCAAGAACCCGGCGGTGGCGATTG
CAATGGGCAAGCGTCTCTTTTATTCCCAGCTGGAAAAATCGTCGATTGCG
GGGGCATGTAAGCACTTGCTTGAAGGGAGGCAGAGGGTGGCTGAGAGGAC
GGGAAGAGGGATAGAAGACAGGAAGATGCTGCCAAGCTTGTCTGTGCTCT
CATTTTTATATGTTCATTTTCCTTTTGCTCCTCTTCCTTCCACCCGACAC
TTAATTCCCAGACGACATGGCCGATTATGTAATGAGCGCGAACATGACCG
AGGCTGACACAGAGGAGGGCATCGCAGCCTTTGTCGAGAAGCGACCGCCG
GCGTGGGATTTGTAGAAGTTGAGAAGCGTGGTAAAATGACGGCTATGTTT
TGTGGTAGATCATCGATCGTGTGTGTGCCTGTATACAGGATGTACAAGGG
GGAGGAGGTTATAGTTTGTAGGGGGGGG back to topprotein sequence of NO08G01340.6 >NO08G01340.6-protein ID=NO08G01340.6-protein|Name=NO08G01340.6|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MLLMPRIFRTAASSTISVIHRPTTPLLPLLPRFSLSLSSSAASSPSHDPN
KEPDAPPVLVERRSVAGTHGGYLVVTLNRPRHSNAMSTAILHDLQAVFDK
LPTDKWVRAVVLTGTGHAFCGGHDLYQMHDSQGDKKYFERMFAKCSRFML
SIQRVPQPVVAAVNGLATGAGCQLVAACDLAVASSRAEFGTSGVKLGLFC
ATPSVPLSRNLSRKRAFEMLVTGEYINADKALDWGLVNKVCDHEKLDAEV
LRLVTEIVKNPAVAIAMGKRLFYSQLEKSSIAGACKHLLEGRQRVAERTG
RGIEDRKMLPSLSVLSFLYVHFPFAPLPSTRHLIPRRHGRLCNEREHDRG
* back to topmRNA from alignment at chr8:404582..407062- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G01340.6 ID=NO08G01340.6|Name=NO08G01340.6|organism=Nannochloropsis oceanica|type=mRNA|length=2481bp|location=Sequence derived from alignment at chr8:404582..407062- (Nannochloropsis oceanica)
CTTTGCCTGATGAAAAACCTGTCAAAGTCGCTAGTAATACTCGGACAAAA
ATAAGGGGCGAATAGGCAACAATTTTTTGTTGGAAGGCTCGCCCTCGTGT
GCAAGTCCTAGAGGAGGTCAGGTTGCATGCGATAGTTCTAGAGGGATGTA
GGAACAGCAGAAAAAAAGAACCAAACGAGGCAAAGTTGTGATTGATTGAT
GTGATTGTGATTGTGATTTTGTGATTTTGTGATGTGATCACCTCTGTGAT
GTGACGTGATGTGATGTGATGTGATGTGCTCTCATCATTAAATGCGCAAG
ATGGTCAGAATGAGTGCTCACAAACCATTTCCTCACGCCTAGACACTTGC
GCCCGACCCACCAGCCACTACATACATCATCTACATCATAGTAACAACAA
GGACAATAGTTCCCTCTTGCAACCAAGGAGCCACTCCCTGATCGTCTACG
CATCTTCAACATATCAGTATATCAGTATCAGTGTAAGTGGAGAGCTAACG
TCTCTGACCCCTATCCCCCCCCTTGAAGCATCGAGACATGTTATGTCTAT
CCCACGCACGTGCACCCCCAAGAATTCGTAATGGGGTATCGCGTTATATG
CTGCGTCGGTTATATGCCAATCACCGCGCCTCCCGTCCCCCTGACACCCC
CTACCCTCCCCTTGACTCCCCCGGACACCTTGATGCCCCTCTCCTAGTCC
TCCTGTCCTCTGTCCTTCCTGCCTCCCACTCGCGCATCTCCAACAGCCCG
ATGCCAGGCATGATTTTCTATCCTGCGTCGGGTATAGAGAGATTGCAACA
GAAACTCTCTACATGACTGCTTCTGACCGCCGCAAATGCTTTGCGCCACT
ATAAGCTGACGGGGGATTGATGCAGTCACACATTCCCATTCTTACAACGA
GGCAGGCACGACTTACTTTGCCTCTATCATCTTTTTTCTGTTCTTGACTG
TCATTATCTGCCTCATTTATGATCACGATGTACAACACCATATAGGTATT
AATACTCCCTTCTTTTTTTCAACTTCAATCCAGTCCTCATCCTCGCTCCT
CTCCACCCCTCCATCTCTCCAAAGTAGAGCTTTGTACAATTACAAATTAG
CACCATGCTACTCATGCCCCGCATCTTTCGGACTGCAGCCAGCAGTACAA
TTAGCGTGATTCACCGCCCAACTACGCCTCTCCTTCCCCTCCTCCCGCGC
TTTTCTCTCTCACTCTCCTCCTCCGCCGCCTCCTCGCCTTCCCACGACCC
AAACAAAGAACCGGATGCCCCACCCGTCCTCGTCGAGCGTAGATCGGTCG
CTGGTACCCACGGCGGTTACCTTGTCGTGACTCTCAATCGTCCCCGGCAC
TCCAACGCCATGAGCACAGCGATCCTTCACGACCTCCAAGCTGTTTTCGA
CAAACTCCCGACCGATAAGTGGGTCCGAGCTGTAGTCCTAACGGGGACAG
GACACGCCTTCTGCGGGGGGCATGACCTGTACCAAATGCACGACTCCCAG
GGCGACAAGAAGTACTTCGAGCGGATGTTCGCCAAGTGCTCGCGGTTCAT
GCTGTCGATCCAGAGGGTACCCCAGCCCGTGGTGGCGGCCGTTAACGGGC
TAGCCACAGGCGCTGGTAAGTCTCGGCGTGTGTCTTCGTTTCATTTGTTT
AGTAAAATATTGCAGGTATTTGACTGTCACCTACCATATAATCACTTCGT
ATCTCACCTCTTGAAACGTCTGTCCTTTTCTCACTCCCTCCCAACCATGC
CTCCCTCCCCTCCACCAGGCTGCCAGCTTGTCGCAGCGTGTGATCTAGCC
GTGGCCTCCTCGCGGGCAGAATTTGGAACTTCCGGGGTTAAGCTCGGTTT
GTTCTGCGCCACCCCCAGTGTGCCTCTGAGTCGAAACTTGTCGCGGAAAC
GGGCGTTTGAAATGCTCGTTACGGGAGAGTACATCAATGCGGACAAGGCG
CTGGATTGGGGTTTGGTGAACAAAGTGTGTGACCATGAGAAATTGGATGC
CGAGGTCTTGAGGCTCGTGACGGAGATTGTCAAGAACCCGGCGGTGGCGA
TTGCAATGGGCAAGCGTCTCTTTTATTCCCAGCTGGAAAAATCGTCGATT
GCGGGGGCATGTAAGCACTTGCTTGAAGGGAGGCAGAGGGTGGCTGAGAG
GACGGGAAGAGGGATAGAAGACAGGAAGATGCTGCCAAGCTTGTCTGTGC
TCTCATTTTTATATGTTCATTTTCCTTTTGCTCCTCTTCCTTCCACCCGA
CACTTAATTCCCAGACGACATGGCCGATTATGTAATGAGCGCGAACATGA
CCGAGGCTGACACAGAGGAGGGCATCGCAGCCTTTGTCGAGAAGCGACCG
CCGGCGTGGGATTTGTAGAAGTTGAGAAGCGTGGTAAAATGACGGCTATG
TTTTGTGGTAGATCATCGATCGTGTGTGTGCCTGTATACAGGATGTACAA
GGGGGAGGAGGTTATAGTTTGTAGGGGGGGG back to topCoding sequence (CDS) from alignment at chr8:404582..407062- >NO08G01340.6 ID=NO08G01340.6|Name=NO08G01340.6|organism=Nannochloropsis oceanica|type=CDS|length=1053bp|location=Sequence derived from alignment at chr8:404582..407062- (Nannochloropsis oceanica)
ATGCTACTCATGCCCCGCATCTTTCGGACTGCAGCCAGCAGTACAATTAG
CGTGATTCACCGCCCAACTACGCCTCTCCTTCCCCTCCTCCCGCGCTTTT
CTCTCTCACTCTCCTCCTCCGCCGCCTCCTCGCCTTCCCACGACCCAAAC
AAAGAACCGGATGCCCCACCCGTCCTCGTCGAGCGTAGATCGGTCGCTGG
TACCCACGGCGGTTACCTTGTCGTGACTCTCAATCGTCCCCGGCACTCCA
ACGCCATGAGCACAGCGATCCTTCACGACCTCCAAGCTGTTTTCGACAAA
CTCCCGACCGATAAGTGGGTCCGAGCTGTAGTCCTAACGGGGACAGGACA
CGCCTTCTGCGGGGGGCATGACCTGTACCAAATGCACGACTCCCAGGGCG
ACAAGAAGTACTTCGAGCGGATGTTCGCCAAGTGCTCGCGGTTCATGCTG
TCGATCCAGAGGGTACCCCAGCCCGTGGTGGCGGCCGTTAACGGGCTAGC
CACAGGCGCTGGCTGCCAGCTTGTCGCAGCGTGTGATCTAGCCGTGGCCT
CCTCGCGGGCAGAATTTGGAACTTCCGGGGTTAAGCTCGGTTTGTTCTGC
GCCACCCCCAGTGTGCCTCTGAGTCGAAACTTGTCGCGGAAACGGGCGTT
TGAAATGCTCGTTACGGGAGAGTACATCAATGCGGACAAGGCGCTGGATT
GGGGTTTGGTGAACAAAGTGTGTGACCATGAGAAATTGGATGCCGAGGTC
TTGAGGCTCGTGACGGAGATTGTCAAGAACCCGGCGGTGGCGATTGCAAT
GGGCAAGCGTCTCTTTTATTCCCAGCTGGAAAAATCGTCGATTGCGGGGG
CATGTAAGCACTTGCTTGAAGGGAGGCAGAGGGTGGCTGAGAGGACGGGA
AGAGGGATAGAAGACAGGAAGATGCTGCCAAGCTTGTCTGTGCTCTCATT
TTTATATGTTCATTTTCCTTTTGCTCCTCTTCCTTCCACCCGACACTTAA
TTCCCAGACGACATGGCCGATTATGTAATGAGCGCGAACATGACCGAGGC
TGA back to top
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