NO08G00860.1, NO08G00860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00860.1
Unique NameNO08G00860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1653
Alignment locationchr8:280253..282123 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:280253..282123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO08G00860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00860NO08G00860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00860.1NO08G00860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00860.1.cds1NO08G00860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00860.1.cds2NO08G00860.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00860.1.cds3NO08G00860.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00860.1 ID=NO08G00860.1|Name=NO08G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1653bp
ATGGTTGCAACGCGGGCCGGCACGGTCGAGGAGGAGTCTCATAACCAACA
AGAAGCCGCCGGTCGAAGTCCTTTGGGGAGACGACGCGCAAGCAAGCGCC
AGGTCCACCAGGAATTCGACGACGACGACGACGCGACAGACGAAGGCGGG
CAGCAAGACCAACTGGAACGTCGCCAAGAGCGACAGCATCACCGTGGTAT
CAAGCTGGACAGTGAGCATAAGGACGAGGAGGAAGGGGGGGAGGAAGAGG
AGGGAAACGATGCCCCACCGTCTGCCAAGCGCAGCAGGCGGGCGGCGGCA
GCTGCTGCAGCTGTGCCCGCTCTTGCCGACGCCGAGGAGGACGACGAGGA
GGGCGAGGGCGGGGATAGCGCGCAAGACGAGGAGGAGGGGGAGCAGGAGG
AGGAGCAAAGAGCCGAACTGCACGTGGTCGGGACTGGGCGGTCGACGCGG
CGCTCGTCACGGAGCCAAGACCAGCAACAGCCCAGCGCAGGCTCGCGGGA
ACTGCGTGATTTGTTGGAAAATGGGGCGGGACGTGGTATTACTGACAGTC
GTCGTTCAACCCGTTCCTCCGCACCAGGCCCCAACCGCAACAATCGCAAC
AGAGACCGTGTGACGCGACGAGGCCAGCACGTTGAGGAGGACGAAGACGA
GGACGAGGACATGGACAACGATGATGAGGCCGCGGCCGTGAATCGGCGTG
TCGTGGAACTTCGGCGGCGACGACATCGTGAGGAGGTTGCAAATAGCCGA
GGGAGGGGTGGGGGGCGAGGTCTGACGGACCGATATCTCAGTGGCCGTCG
GCACCGTCTTGGGGAAGACGAGGACGAGGGGGATAGCGAGGACGAGGAGG
AGGAGAGGTACGGCAGCCCGGGTGTGGATGGGTCAAGTCAGGAAGAGGAG
GAAGAGATAGGGGGAGGAAGGGAAGGAGAGAGGGCGACACGGTACTCGAG
TCGGTTGTCTTGTGCCCGAACTTCCTCTCGGTTGGCTTCAAATGGTGGTG
GAGGAGGCTCTTCTTGCTCAATAGCAGGTGTAGCAGCAGCGGCAGCAGCA
GCTTCGTCCTCTCGTCGAAGCCGTCGGTCGGATCTGGCAAGGTTAGAATC
ATCATTGGTGTGTGCCCAGAGGGAGGAAGGGAGGGAGGAAAGGATGGAGT
TTGGGGCTGGCAGGCGAAGTTATCCAAGGAGGGAGCGAAAGGCGGTGAGT
CACTTCAGCCAGGAACAGCAGGAGGAGGAGGAGAGGAGGAATGCGCAACG
AATCCTGACACGAAGAGGGAATGGAGGGGTGGGTGGAGGAGGGATGGGAA
CGTTCGGCGGAGGACACCACCATCGGCCGACGTCGCATCATCATCATAGC
CACCACCACTCCTCCTCGACCTCGCATGGGCGGCATCGGAAAGGGGGGGG
GCATGGCCAGAAGAGGACACATGGAGGGAGAAAGAAGCATTACGACAGTA
GCAGCATGTCTTCCTCCTCTTCTTCGTCGGAGAGAGAGGGGGGAGAGTCG
TCCTCCGGGTCGGATTCTGACACGGACAAGAATTTTCAACGCTACCAGCG
TGCCAAGTGGAAGGATGACTTGCATTCGATTCAGCCAATCAATGGCCAAG
GAGGAGGAGGCGGTGGCAGAGGCGGAGGGGGGAGGGGGGAGGGAAGGCAG
TGA
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protein sequence of NO08G00860.1

>NO08G00860.1-protein ID=NO08G00860.1-protein|Name=NO08G00860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=551bp
MVATRAGTVEEESHNQQEAAGRSPLGRRRASKRQVHQEFDDDDDATDEGG
QQDQLERRQERQHHRGIKLDSEHKDEEEGGEEEEGNDAPPSAKRSRRAAA
AAAAVPALADAEEDDEEGEGGDSAQDEEEGEQEEEQRAELHVVGTGRSTR
RSSRSQDQQQPSAGSRELRDLLENGAGRGITDSRRSTRSSAPGPNRNNRN
RDRVTRRGQHVEEDEDEDEDMDNDDEAAAVNRRVVELRRRRHREEVANSR
GRGGGRGLTDRYLSGRRHRLGEDEDEGDSEDEEEERYGSPGVDGSSQEEE
EEIGGGREGERATRYSSRLSCARTSSRLASNGGGGGSSCSIAGVAAAAAA
ASSSRRSRRSDLARLESSLVCAQREEGREERMEFGAGRRSYPRRERKAVS
HFSQEQQEEEERRNAQRILTRRGNGGVGGGGMGTFGGGHHHRPTSHHHHS
HHHSSSTSHGRHRKGGGHGQKRTHGGRKKHYDSSSMSSSSSSSEREGGES
SSGSDSDTDKNFQRYQRAKWKDDLHSIQPINGQGGGGGGRGGGGRGEGRQ
*
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mRNA from alignment at chr8:280253..282123+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00860.1 ID=NO08G00860.1|Name=NO08G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1871bp|location=Sequence derived from alignment at chr8:280253..282123+ (Nannochloropsis oceanica)
ATGGTTGCAACGCGGGCCGGCACGGTCGAGGTAAGTGTGGGCTTAAAAAA
TATATGCCGATCTCGCCCAGTCTCCGATTTCGTCACTTCTGCATGCTCTC
ATACAGGAGGAGTCTCATAACCAACAAGAAGCCGCCGGTCGAAGTCCTTT
GGGGAGACGACGCGCAAGCAAGTGAGTATTGACTCCTCATCCCGCCCCTC
TGAACCTCGTCGCGGATCATAGAATGCTGTCTAGTAGTATATTATCCTGT
ACCTATCATCCACTCCTATCAATATTTTCTCTTCTCATTAATACGTCCTC
GTTCTATTGTTAGGCGCCAGGTCCACCAGGAATTCGACGACGACGACGAC
GCGACAGACGAAGGCGGGCAGCAAGACCAACTGGAACGTCGCCAAGAGCG
ACAGCATCACCGTGGTATCAAGCTGGACAGTGAGCATAAGGACGAGGAGG
AAGGGGGGGAGGAAGAGGAGGGAAACGATGCCCCACCGTCTGCCAAGCGC
AGCAGGCGGGCGGCGGCAGCTGCTGCAGCTGTGCCCGCTCTTGCCGACGC
CGAGGAGGACGACGAGGAGGGCGAGGGCGGGGATAGCGCGCAAGACGAGG
AGGAGGGGGAGCAGGAGGAGGAGCAAAGAGCCGAACTGCACGTGGTCGGG
ACTGGGCGGTCGACGCGGCGCTCGTCACGGAGCCAAGACCAGCAACAGCC
CAGCGCAGGCTCGCGGGAACTGCGTGATTTGTTGGAAAATGGGGCGGGAC
GTGGTATTACTGACAGTCGTCGTTCAACCCGTTCCTCCGCACCAGGCCCC
AACCGCAACAATCGCAACAGAGACCGTGTGACGCGACGAGGCCAGCACGT
TGAGGAGGACGAAGACGAGGACGAGGACATGGACAACGATGATGAGGCCG
CGGCCGTGAATCGGCGTGTCGTGGAACTTCGGCGGCGACGACATCGTGAG
GAGGTTGCAAATAGCCGAGGGAGGGGTGGGGGGCGAGGTCTGACGGACCG
ATATCTCAGTGGCCGTCGGCACCGTCTTGGGGAAGACGAGGACGAGGGGG
ATAGCGAGGACGAGGAGGAGGAGAGGTACGGCAGCCCGGGTGTGGATGGG
TCAAGTCAGGAAGAGGAGGAAGAGATAGGGGGAGGAAGGGAAGGAGAGAG
GGCGACACGGTACTCGAGTCGGTTGTCTTGTGCCCGAACTTCCTCTCGGT
TGGCTTCAAATGGTGGTGGAGGAGGCTCTTCTTGCTCAATAGCAGGTGTA
GCAGCAGCGGCAGCAGCAGCTTCGTCCTCTCGTCGAAGCCGTCGGTCGGA
TCTGGCAAGGTTAGAATCATCATTGGTGTGTGCCCAGAGGGAGGAAGGGA
GGGAGGAAAGGATGGAGTTTGGGGCTGGCAGGCGAAGTTATCCAAGGAGG
GAGCGAAAGGCGGTGAGTCACTTCAGCCAGGAACAGCAGGAGGAGGAGGA
GAGGAGGAATGCGCAACGAATCCTGACACGAAGAGGGAATGGAGGGGTGG
GTGGAGGAGGGATGGGAACGTTCGGCGGAGGACACCACCATCGGCCGACG
TCGCATCATCATCATAGCCACCACCACTCCTCCTCGACCTCGCATGGGCG
GCATCGGAAAGGGGGGGGGCATGGCCAGAAGAGGACACATGGAGGGAGAA
AGAAGCATTACGACAGTAGCAGCATGTCTTCCTCCTCTTCTTCGTCGGAG
AGAGAGGGGGGAGAGTCGTCCTCCGGGTCGGATTCTGACACGGACAAGAA
TTTTCAACGCTACCAGCGTGCCAAGTGGAAGGATGACTTGCATTCGATTC
AGCCAATCAATGGCCAAGGAGGAGGAGGCGGTGGCAGAGGCGGAGGGGGG
AGGGGGGAGGGAAGGCAGTGA
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Coding sequence (CDS) from alignment at chr8:280253..282123+

>NO08G00860.1 ID=NO08G00860.1|Name=NO08G00860.1|organism=Nannochloropsis oceanica|type=CDS|length=1653bp|location=Sequence derived from alignment at chr8:280253..282123+ (Nannochloropsis oceanica)
ATGGTTGCAACGCGGGCCGGCACGGTCGAGGAGGAGTCTCATAACCAACA
AGAAGCCGCCGGTCGAAGTCCTTTGGGGAGACGACGCGCAAGCAAGCGCC
AGGTCCACCAGGAATTCGACGACGACGACGACGCGACAGACGAAGGCGGG
CAGCAAGACCAACTGGAACGTCGCCAAGAGCGACAGCATCACCGTGGTAT
CAAGCTGGACAGTGAGCATAAGGACGAGGAGGAAGGGGGGGAGGAAGAGG
AGGGAAACGATGCCCCACCGTCTGCCAAGCGCAGCAGGCGGGCGGCGGCA
GCTGCTGCAGCTGTGCCCGCTCTTGCCGACGCCGAGGAGGACGACGAGGA
GGGCGAGGGCGGGGATAGCGCGCAAGACGAGGAGGAGGGGGAGCAGGAGG
AGGAGCAAAGAGCCGAACTGCACGTGGTCGGGACTGGGCGGTCGACGCGG
CGCTCGTCACGGAGCCAAGACCAGCAACAGCCCAGCGCAGGCTCGCGGGA
ACTGCGTGATTTGTTGGAAAATGGGGCGGGACGTGGTATTACTGACAGTC
GTCGTTCAACCCGTTCCTCCGCACCAGGCCCCAACCGCAACAATCGCAAC
AGAGACCGTGTGACGCGACGAGGCCAGCACGTTGAGGAGGACGAAGACGA
GGACGAGGACATGGACAACGATGATGAGGCCGCGGCCGTGAATCGGCGTG
TCGTGGAACTTCGGCGGCGACGACATCGTGAGGAGGTTGCAAATAGCCGA
GGGAGGGGTGGGGGGCGAGGTCTGACGGACCGATATCTCAGTGGCCGTCG
GCACCGTCTTGGGGAAGACGAGGACGAGGGGGATAGCGAGGACGAGGAGG
AGGAGAGGTACGGCAGCCCGGGTGTGGATGGGTCAAGTCAGGAAGAGGAG
GAAGAGATAGGGGGAGGAAGGGAAGGAGAGAGGGCGACACGGTACTCGAG
TCGGTTGTCTTGTGCCCGAACTTCCTCTCGGTTGGCTTCAAATGGTGGTG
GAGGAGGCTCTTCTTGCTCAATAGCAGGTGTAGCAGCAGCGGCAGCAGCA
GCTTCGTCCTCTCGTCGAAGCCGTCGGTCGGATCTGGCAAGGTTAGAATC
ATCATTGGTGTGTGCCCAGAGGGAGGAAGGGAGGGAGGAAAGGATGGAGT
TTGGGGCTGGCAGGCGAAGTTATCCAAGGAGGGAGCGAAAGGCGGTGAGT
CACTTCAGCCAGGAACAGCAGGAGGAGGAGGAGAGGAGGAATGCGCAACG
AATCCTGACACGAAGAGGGAATGGAGGGGTGGGTGGAGGAGGGATGGGAA
CGTTCGGCGGAGGACACCACCATCGGCCGACGTCGCATCATCATCATAGC
CACCACCACTCCTCCTCGACCTCGCATGGGCGGCATCGGAAAGGGGGGGG
GCATGGCCAGAAGAGGACACATGGAGGGAGAAAGAAGCATTACGACAGTA
GCAGCATGTCTTCCTCCTCTTCTTCGTCGGAGAGAGAGGGGGGAGAGTCG
TCCTCCGGGTCGGATTCTGACACGGACAAGAATTTTCAACGCTACCAGCG
TGCCAAGTGGAAGGATGACTTGCATTCGATTCAGCCAATCAATGGCCAAG
GAGGAGGAGGCGGTGGCAGAGGCGGAGGGGGGAGGGGGGAGGGAAGGCAG
TGA
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Synonyms
Publications