NO08G00280.1, NO08G00280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00280.1
Unique NameNO08G00280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length960
Alignment locationchr8:111285..112766 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:111285..112766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G00280.1 vs.
Match: XP_005854751.1 (n -adenine-specific dna methyltransferase 1, partial [Nannochloropsis gaditana CCMP526]; EKU21611.1 n -adenine-specific dna methyltransferase 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 323.9 bits (829), Expect = 4.000e-85
Identity = 166/223 (74.44%), Postives = 186/223 (83.41%), Query Frame = 0 
Query:    3 ISTKTTPPLEESPAELPDLDHLTMADFRHIYEPSDDTFLLMDTLEADVVSLQALRPRIVVEIGSGSGCATAVLARTLTKALGPSHQTLFFATDINERAIRATRATAVANHIHNLETLQIDLLLPLLPRLLHSIDILLFNPPYVPTPSSEVGSRGIEASWAGGEDGREVLDRLLPSIPLLLSPDGGCMYLVAVNENRPEEICAMMRKAGLQAKAVRTRKARNEV 226
            +S+ + PP  +  AELPDLDHLTM DFRHIYEPSDDTFLLMD LEAD   L+A +PRIVVEIGSGSGC TAVLARTL  ALGP H TLF +TDIN RA+RAT+AT  AN I + E LQ DLL PLLPRLLHS+D+L+FNPPYVPTP+SEVGS GIEASWAGG+DGREVLDR+L SIP LL P GGCMYLVAVNEN PE+ICA MR+  LQA+ VR+RKARNEV
Sbjct:    1 MSSLSAPPSPQ--AELPDLDHLTMDDFRHIYEPSDDTFLLMDALEADAQKLKARKPRIVVEIGSGSGCVTAVLARTLRDALGPEHCTLFISTDINSRAVRATQATGSANSILHHEILQADLLAPLLPRLLHSVDLLVFNPPYVPTPTSEVGSHGIEASWAGGKDGREVLDRILDSIPNLLRPQGGCMYLVAVNENLPEDICARMREENLQAEVVRSRKARNEV 221
The following BLAST results are available for this feature:
BLAST of NO08G00280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854751.14.000e-8574.44n -adenine-specific dna methyltransferase 1, parti... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00280NO08G00280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00280.1NO08G00280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00280.1.cds1NO08G00280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00280.1.cds2NO08G00280.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00280.1.cds3NO08G00280.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00280.1.cds4NO08G00280.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00280.1 ID=NO08G00280.1|Name=NO08G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=960bp
ACAGCACACACACGCACACCCACACACGACACAATGATGATAAACAAGAC
GATGGTGTAACATAGAGAAACACAGCTTTACTCGACATAAACCGCCGGCC
TCCTCACCCCACCCGATCGGAATCATGACCATCTCTACTAAGACGACGCC
GCCCCTCGAGGAGTCGCCCGCGGAGCTCCCTGATCTAGACCACCTGACAA
TGGCAGACTTCAGGCACATTTACGAGCCTTCAGATGATACGTTTTTGCTT
ATGGACACCCTGGAAGCCGATGTGGTATCCCTTCAAGCCCTGCGGCCCCG
CATTGTGGTGGAAATAGGCTCCGGCAGTGGCTGTGCTACGGCCGTGTTGG
CACGCACCCTAACCAAGGCATTGGGCCCTTCCCATCAAACCCTCTTCTTC
GCCACCGACATCAACGAACGAGCAATTCGCGCGACTCGAGCCACAGCTGT
AGCCAACCACATCCACAACCTCGAAACCCTTCAAATCGACCTCCTTCTCC
CCCTCCTCCCCCGTCTCCTCCACTCCATCGACATCCTCCTCTTCAACCCT
CCATATGTCCCCACCCCCTCCTCCGAAGTCGGATCTCGAGGCATCGAGGC
CAGCTGGGCGGGAGGAGAAGACGGGAGGGAGGTTTTGGACAGGCTTCTTC
CCTCCATCCCTTTATTGCTTTCACCTGACGGCGGGTGTATGTACCTGGTG
GCAGTGAATGAGAATAGGCCGGAGGAGATTTGCGCGATGATGAGGAAGGC
GGGTTTGCAGGCTAAGGCGGTCCGCACCCGCAAGGCTCGGAATGAGGTCC
TGACCATCCTCAAGTTCATTCGGCCTTGACCATGAAAGGGAAAGGGGGGA
TAGAGGGGAGGGGTAGGGGCGAAATGCATGTGGCGAGGTGGAGAAGAAAT
CCATAAAACACCAGAATATCATAATGTGCGTAAAAGAAGAAAGTAAAAAT
TTGATCGTGA
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protein sequence of NO08G00280.1

>NO08G00280.1-protein ID=NO08G00280.1-protein|Name=NO08G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MTISTKTTPPLEESPAELPDLDHLTMADFRHIYEPSDDTFLLMDTLEADV
VSLQALRPRIVVEIGSGSGCATAVLARTLTKALGPSHQTLFFATDINERA
IRATRATAVANHIHNLETLQIDLLLPLLPRLLHSIDILLFNPPYVPTPSS
EVGSRGIEASWAGGEDGREVLDRLLPSIPLLLSPDGGCMYLVAVNENRPE
EICAMMRKAGLQAKAVRTRKARNEVLTILKFIRP*
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mRNA from alignment at chr8:111285..112766+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00280.1 ID=NO08G00280.1|Name=NO08G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp|location=Sequence derived from alignment at chr8:111285..112766+ (Nannochloropsis oceanica)
ACAGCACACACACGCACACCCACACACGACACAATGATGATAAACAAGAC
GATGGTGTAACATAGAGAAACACAGCTTTACTCGACATAAACCGCCGGCC
TCCTCACCCCACCCGATCGGAATCATGACCATCTCTACTAAGACGACGCC
GCCCCTCGAGGAGTCGCCCGCGGAGCTCCCTGATCTAGACCACCTGACAA
TGGCAGACTTCAGGCACATTTACGAGCCTTCAGATGATACGTTTTTGCTT
ATGGACACCCTGGAAGCCGATGTGGTATCCCTTCAAGCCCTGCGGCCCCG
CATTGTGGTGGAAATAGGGTACGTGCATGTGTATAAGACGGAATACATAG
GTCGAGCTTATGATAAGTGAGGTCGTTCTTGCAGCCCCCCCTCCTTTATA
TCTGTGCATGTGTTAAACTATGTCTGCTCTCTGGCATGATATACTGATGA
CAGGGAGGGAGGAAGGGCAGCCATTGATCAAGACATGAGAAGATGAGAAG
ACGGAGAGAATGAATCCAACTCACCCACACACCCATGTACACCCACCCAC
CCCACTCAGCTCCGGCAGTGGCTGTGCTACGGCCGTGTTGGCACGCACCC
TAACCAAGGCATTGGGCCCTTCCCATCAAACCCTCTTCTTCGCCACCGAC
ATCAACGAACGAGCAATTCGCGCGACTCGAGCCACAGCTGTAGCCAACCA
CGTGCGTCTTATTCGCGAGCGACTGTTTCTTCTCTCCCTCCTTTCCCTTC
TTGATCCCTTCATGCTCTTGCCCTTCTTCTTCCCCTGTCACGCAATCACT
CACCCAGCCAGTCCTTTCCCTCCTCCCCTCCTCAGATCCACAACCTCGAA
ACCCTTCAAATCGACCTCCTTCTCCCCCTCCTCCCCCGTCTCCTCCACTC
CATCGACATCCTCCTCTTCAACCCTCCATATGTCCCCACCCCCTCCTCCG
AAGTCGGATCTCGAGGCATCGAGGCCAGCTGGGCGGGAGGAGAAGACGGG
AGGGAGGTTTTGGACAGGCTTCTTCCCTCCATCCCTTTATTGCTTTCACC
TGACGGCGGGTGTATGTACCTGGTGGCAGTGAATGAGAATAGGCCGGAGG
AGATTTGCGCGATGATGAGGAAGGCGGGTTTGCAGGCTAAGGTAGGAGGG
AATGGGAGGGAGGTTAGGTAAGAGTGTATGGGCGAGGAATGTGGATCATT
TCCGTGGTGATCGTTTTGATTGGCGTCATTACAAAGGAGGCTCATTGTCT
GTCACACATTCTCTACCTGCCCCTATATTTCAATCTAGGCGGTCCGCACC
CGCAAGGCTCGGAATGAGGTCCTGACCATCCTCAAGTTCATTCGGCCTTG
ACCATGAAAGGGAAAGGGGGGATAGAGGGGAGGGGTAGGGGCGAAATGCA
TGTGGCGAGGTGGAGAAGAAATCCATAAAACACCAGAATATCATAATGTG
CGTAAAAGAAGAAAGTAAAAATTTGATCGTGA
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Coding sequence (CDS) from alignment at chr8:111285..112766+

>NO08G00280.1 ID=NO08G00280.1|Name=NO08G00280.1|organism=Nannochloropsis oceanica|type=CDS|length=705bp|location=Sequence derived from alignment at chr8:111285..112766+ (Nannochloropsis oceanica)
ATGACCATCTCTACTAAGACGACGCCGCCCCTCGAGGAGTCGCCCGCGGA
GCTCCCTGATCTAGACCACCTGACAATGGCAGACTTCAGGCACATTTACG
AGCCTTCAGATGATACGTTTTTGCTTATGGACACCCTGGAAGCCGATGTG
GTATCCCTTCAAGCCCTGCGGCCCCGCATTGTGGTGGAAATAGGCTCCGG
CAGTGGCTGTGCTACGGCCGTGTTGGCACGCACCCTAACCAAGGCATTGG
GCCCTTCCCATCAAACCCTCTTCTTCGCCACCGACATCAACGAACGAGCA
ATTCGCGCGACTCGAGCCACAGCTGTAGCCAACCACATCCACAACCTCGA
AACCCTTCAAATCGACCTCCTTCTCCCCCTCCTCCCCCGTCTCCTCCACT
CCATCGACATCCTCCTCTTCAACCCTCCATATGTCCCCACCCCCTCCTCC
GAAGTCGGATCTCGAGGCATCGAGGCCAGCTGGGCGGGAGGAGAAGACGG
GAGGGAGGTTTTGGACAGGCTTCTTCCCTCCATCCCTTTATTGCTTTCAC
CTGACGGCGGGTGTATGTACCTGGTGGCAGTGAATGAGAATAGGCCGGAG
GAGATTTGCGCGATGATGAGGAAGGCGGGTTTGCAGGCTAAGGCGGTCCG
CACCCGCAAGGCTCGGAATGAGGTCCTGACCATCCTCAAGTTCATTCGGC
CTTGA
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Synonyms
Publications