Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr8 genome chr8:85061..89907 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G00220.1 vs.
Match: XP_002177281.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1]; EEC51744.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])
HSP 1 Score: 190.3 bits (482), Expect = 2.500e-44
Identity = 202/688 (29.36%), Postives = 292/688 (42.44%), Query Frame = 0
Query: 187 PPSMSNSSSLASLRPPPPTPG-VTPPSSKIENEGEGDRGDSIN-SNLLPAFATPSKQTPGTGRKGSAARRRYTVSPMLSRTPKKMEPRLGDMVLKAAVDTAACLTSPISDWKKQKAVFDACALSRATPEHNKIQA-LASSLASEPSLAKARSTRLAMLAPDGQTPLHCAAAMNNMTALN-LLLLAPETDCF-AVDLQGRTALHLAATNGHLEACRLLKHEMTRRAEGGREGGREGGQAPVGMAAPVDLSGRTPLGWRVS-----AAGEKKELEEELFALGDPSIF----PTVPLQARTGGERLGFGYCSTPGWQPKMEDTVCVQTPLGGGGGGGGGGIGEGEGGRGDGGDEGVGEEDGLFAVFDGHQGL-LCAEFAANHLVETLFESRAWRRGRAGGREEEEEEKGEEGGWVREALIETCLSLDRKLAELPDFQMKEEHTMGVGSMAHKVLSSKLVSADSSGSTAVICLVTPSLVACANLGDSRAVLLARKGGSDDDIDDPSAPLSLH-------------------ALPLSFDHKPELESEKQRVEAAGGLVKGMNVAPDKDSAPVLIWRVYPREGTADSLAMTRALGDFAYKRKLGLGVEEQMIIPLPDVHLHPRGPADEFLVLACDGVWDVFSNDEIAVYVENHVNATRDGGRKSTYLAELADDIVKESMRRGSRDNITALVVRL 841
PPS + + + TPG V +K +E + ++ + P F TPS TP T + +E R VL A DTA L SP K K VF L+ A P ++K+Q L ++++PS+ KARS + L PDG TP AA N + A LLLL P T+ V+LQG++A HLAAT G+LE +K G PVDL GRTPLG ++ A K+ + + LF+ D SI P A +L +G PG + ED + L D V G+F VFDGH + F A+ + L + ++ G+ W R A CL +D L + S + GSTAV ++T + AN+GDSR +L+ S ++ + LS+ LS DHKPE +E R++AAG + ++D V+I +V +G + +A +R+ GDF YK L E Q I+ +PDV +H R AD +LVLACDG+WDV S+DE+ +V H+ + G L E+ D ++ E ++RGS DN++A+VV L
Sbjct: 43 PPSEAFQQRVQCIHCHKYTPGMVVQQPAKASSEAASTQSNARRLTPTTPGFHTPSPTTPLTQSSDHVNGSEVHL----------VEHR----VLLAVRDTAFDLASPEFAKKSSKDVFRW--LASAQPINDKLQKRLERRISADPSICKARSHGMEPLCPDGLTPFLLAAHSNQVAAAKILLLLGPRTEQLQTVNLQGKSAYHLAATRGNLEFLDYIKTVYEDPQNG----------TLFSSPTPVDLLGRTPLGAALTSPEPQAKRNKQTMMDRLFSPQDMSILGSPAPVTQRTATLSELQLAYGSSHMPGKRIMNEDAILTTKIL-------------------LSDDSTV----GVFGVFDGHSDAGKVSNFIASQIPHAL--------------RDAMQQAGDWNSWCRHA----CLEIDANLKK---------------------------SNIAGGSTAVFAIITLDQIVVANVGDSRCILVQHDSVSVSNVAEGVERLSISETVYPQTGTETNTLSGAFLVKALSEDHKPEASAEHARIQAAGMTITEERF--EEDGEEVVIHKVRLSDG--NRMACSRSFGDFEYKANETLEAESQAIVAVPDVVVHERSHADCYLVLACDGIWDVMSSDEVGQFVVEHIKSC---GETEGVLPEVGDRLLAECLQRGSGDNLSAVVVAL 629
The following BLAST results are available for this feature:
BLAST of NO08G00220.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 Expect = 2.50e-44 / Id = 29.36 Sequence XP_002177281.1
Match Name E-value Identity Description
XP_002177281.1 2.500e-44 29.36 predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO08G00220.1 ID=NO08G00220.1|Name=NO08G00220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2719bp back to top protein sequence of NO08G00220.1
>NO08G00220.1-protein ID=NO08G00220.1-protein|Name=NO08G00220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=854bp back to top mRNA from alignment at chr8:85061..89907+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00220.1 ID=NO08G00220.1|Name=NO08G00220.1|organism=Nannochloropsis oceanica|type=mRNA|length=4847bp|location=Sequence derived from alignment at chr8:85061..89907+ (Nannochloropsis oceanica)ATGCGCTTCAGATTCGGCGAGT
GTTCTGTGTCGAGTGTTCTTGTCTTGGTCGTAGCTCATGGACAATCACTA
CCCACCAACAACCCAGCCACAAGCCACCGCAGGCAACCCCTTCTCCCCAA
GAGCATCATGTTTAGCTCTCTTTTGAGCGGCACTTTAGGCGAGATCCTGG
CGCCTTCCCCTTCTGTATCCGCTGAGAAGAAGGAACCATCATCAGAGCAG
GAGCAGCAGGAGCAGCAGCAACAGGAAGCAAGCGGTCAGGGTGCGCAAAC
CTACTCGATTCCACGGCAAGAAGAGGACGCAGCAGCGCGTGCAAGTGTGA
ACAAGACCCTCGCGGATGCCTCAACGCTCTTTCCCTTTCCCGAGGTCGAG
AAGAGAGCCGCCCCCTCTCCTTCGCCTACCGGTGTGACCCCTACTGCCGC
CATGACAGACCCCGCGGCTACAGACGTGACGGGCATGCTCGCCAACCTGT
CGCTCGCGGATGAGAAGAAAGAGCAAGAGCAAGAGCAACAGACCGGTCGA
CAGAGCGCGGCAGCCGTCCTGATGCCTCCCCCTCCCCCTCCGTCGATGTC
CAACTCTTCCTCCCTGGCCTCTTTGCGCCCCCCGCCGCCCACCCCAGGAG
TCACTCCCCCCAGCTCTAAAATTGAGAATGAAGGAGAAGGTGATAGAGGT
GATAGCATCAATAGCAACCTTCTTCCTGCCTTCGCCACGCCTTCCAAGCA
GACGCCGGGTACGGGCAGGAAGGGGTCTGCGGCCCGTCGGCGCTATACGG
TCAGTCCGATGCTCTCCCGCACACCCAAAAAGATGGAGCCGAGGTTGGGA
GACATGGTGCTGAAG GTAGGCCAGGAAGGAAGGAGGGAAGGAGGGAAGGA
AGGAGAGACACTCACGCACCGACAAGGAGTCACACTCACGCATCGACACA
ACGATTCTAACGCGCCATATGCCTGTGGACTGTGGATCCCGTCCCTCCCC
CCCCTCCCCCCCTGTAGGCGGCCGTCGACACCGCAGCGTGTCTGACGAGC
CCCATCAGTGACTGGAAGAAGCAGAAGGCCGTCTTTGATGCCTGTGCGCT
TTCGCGGGCCACCCCCGAGCATAACAAGATACAA GTATGGAGGGGGTAGG
GAGGAAGGAGGGAGGGAAGGAGGGAGGAAGGAAGACGGCCCAGCCAGGTC
CAACGGGGAGAAAGTTTCCATCACGCCGCTTCCTTTCAATCCCTCCCTCC
CGCCCTCAATCCCTCCCTCCCCCAGGCCCTTGCTTCCTCCCTCGCCTCCG
AGCCGTCTCTTGCCAAGGCCCGTAGCACGCGTTTGGCGATGCTCGCTCCT
GATGGACAGACACCCCTCCACTGTGCCGCGGCGATGAACAACATGACTGC
GCTTAATTTATTGCTCCTAGCGCCGGAGACAGACTGCTTTGCCGTGGACT
TGCAGGG GTGAGGAAGGAGGGAGGGAGGGAGGGAGCGAGAGAGGGAGGGA
GGGCTTGAGGGAGGGAAGGGAGGGGGAGACCTCATGTAAACATCACCCAC
CCCCATTGGAGTCTCTGACATATGCTTCGACGTGCACCCTCTCATGCACA
CAAAACCTTCCCGCCTCCTCCTTTCCCTCCCTTCCGCCCTCTCTCCCTCT
TTCCCTGCCTCCTCCCTAGTCGGACAGCCCTCCACCTCGCCGCTACCAAC
GGTCACCTGGAAGCCTGCCGTCTTCTAAAGCACGAGATGACGCGTAGAGC
CGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCAGGCACCGGTAGGGA
TGGCGGCGCCGGTTGATCTGTCGGGAAGAACGCCGTTGGGATGGAGGGTG
TCAGCAGCAGGGGAAAAGAAGGAGCTGGAGGAG GTGGGTAGAGCTTCTAT
TCTTGTCTAGATGTTTCTCGTACCTTGCCTCCTCTTGCGCGTTGGGTTGG
GGCCCTTGGAATCCTTTTTCCTCCCTCCCTCCTTCCCTCCCTGCGCGTAA
TCCGTCGGGGGGACTGGCTGTGCCTGCATTGACTTCCTCCCTGCCTCAAT
CCTCCCCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCTCTCATTTCAATCG
CAGGAGCTCTTTGCGTTGGGAGACCCGTCCATCTTCCCCACGGTGCCCCT
GCAGGCCCGGACGGGGGGTGAGAGACTCGGCTTCG GTAGGAAGGGGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAAGGATTGCAAATT
TAAGTTCATTTCCTATTCTGAGCTCATGTTTTTCGCCTTATTTTTAATTT
GTTCGAATACTTTCATGCCCCTTCCTCCATTCCCTCCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCCTTTTAAGGCTACTGCTCCACGCCGGGTTGGCA
GCCTAAGATGGAGGACACGGTTTGCGTGCAGACGCCTCTAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAATAGGAGAAGGGGAGGGCGGGAGGGGGGAC
GGGGGGGACGAAGGAGTAGGGGAGGAGGACGGTCTTTTCGCTGTGTTCGA
TGGACACCAAG GTGAGGAGGAGAAGATGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAAGGAAGGAAGATGTGAA
TGAACCACCCTCGCACTTCCGGCATTTCCATTTTATCCATTCCTCCTCCT
CCTCTCGTGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCTTGCTCCCAGGCCTC
CTGTGTGCGGAGTTCGCCGCCAACCACCTCGTGGAGACCCTCTTCGAGTC
CCGGGCCTGGCGCCGGGGGAGGGCGGGGGGGCGGGAGGAGGAGGAGGAGG
AGAAGGGGGAGGAGGGGGGATGGGTGCGGGAGGCACTGATTGAGACTTGC
CTCTCCCTCGATCGGAAACTGGCAGAGCTGCCGGACTTTCAG GTGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGAGGTGGTCGGACCAATAATTAAA
TACCCTTTTTATTCATCCTTCCCCCTCTCCCTTCCCTCCTCCCTTCATCC
CTCCCTCCCTCCCTCACCGCGCAGATGAAGGAGGAGCATACGATGGGGGT
GGGTAGCATGGCCCATAAGGTGCTTTCCTCGAAGCTGGTCTCGGCAG GTA
GGAAGGGAGGGTGGAAGGGAGGGAGGGAGAGAGGGCGGGAAGAGCGGAAA
GAGGCGATTGTCTTGTCTACTTGCCGCTGTCCTGGATCCTGTCATTTGGA
GCGCTCGTCCAGGCCCACTTCCATTGTTATCCCTTCCTCCCTCCCTCCTC
TAGACTCGAGTGGGAGCACGGCGGTCATCTGCCTAGTGACTCCCTCTCTA
GTCGCCTGCGCAAATCTGGGAGACAGCCGGGCGGTGCTGCTGGCCAGGAA
GGGAGGGAG GTACAGAGGGAGGGAGGGAGGGGAGGGAGGGAGGGAGGGAA
GGAGGGAGGGAGGGAGTCAGCATACGTGTTGGAAGAGCACCGACACCTAC
AGGGGAGACGCGCCTTCCTTCGCGTCCTCATCTCCCTCCCTCCCTCCCTC
TCTCCACCCCCCCCTCCCTCCCTCCCCCCCTTCCCCTCACGTTTTCATTT
ACCCAGCGACGACGACATTGACGATCCTTCCGCCCCTCTCTCCCTGCATG
CCCTGCCCCTCTCCTTCGACCACAAACCCGAGTTGGAGAGCGAGAAACAG
CGGGTGGAGGCCGCGGGAGGGTTAGTGAAGGGAATGAATGTGGCCCCGGA
CAAGGACAGTGCGCCCGTGTTGATTTGGCG GTAGGCAAGGAGGGAGAGAG
GGAGGGGAGGACGGAGGAAAGGAAGTTAGTGGAGGCAGCTTGTGCCGCAC
TCGTTTGCCTCCAGCGCTCATGTTTGTCACTTTCTCTCAACACCCCTCCC
TCCGTCCCTCCCTCCCTCCCTCCCTCAGCGTCTATCCCCGTGAAGGTACG
GCGGACTCTCTGGCTATGACCCGAGCCCTCGGCGATTTCGCCTACAAGCG
CAAGCTCGGCTTGGGGGTGGAGGAGCAGATG GTACGGAAAAGGAGGGGGG
GAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGCATGGGATCGAGGTGA
GGGTACGACACAGATTGACTTGTGTTGAATAAAATGTCAAGTCACAGAGC
CACGGCCTGCTTGCACCGGCTATTCTTCCGCTTTGACTCCCTTTCTTCCT
TTCTCTCTCCCTCCCTCCCTCCCTCAGATCATCCCCTTGCCTGACGTCCA
TCTGCACCCGCGCGGGCCTGCGGACGAATTCCTGGTGTTGGCCTGCGATG
GTGTCTGGGACGTGTTTTCCAACGATGAGATCGCTGTCTATGTGGAGAAT
CACGTGAATGCGACCAGAGACGGAGGACGGAAG GTAGGGGGAGGAAGGGG
GGGAAGGGAATGACGGGTGTGACTTCCCCATCACTCTCCTGGGTGTTCAA
TCAGTCCTCCCTCTCTCCCTCCCTCCCTTTCAGTCCACCTACCTGGCCGA
GCTCGCGGACGACATCGTGAAGGAAAGCATGCGCCGAGGCTCCCGAGACA
ACATTACGGCACTGGTGGTGCGTCTCCGCGCACCGGATGATGGGGAACGC
CGAACTTTGTTTATGTGA back to top Coding sequence (CDS) from alignment at chr8:85061..89907+
>NO08G00220.1 ID=NO08G00220.1|Name=NO08G00220.1|organism=Nannochloropsis oceanica|type=CDS|length=2562bp|location=Sequence derived from alignment at chr8:85061..89907+ (Nannochloropsis oceanica) back to top