NO07G04170.1, NO07G04170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G04170.1
Unique NameNO07G04170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1756
Alignment locationchr7:1158822..1160577 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1158822..1160577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO07G04170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G04170NO07G04170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G04170.1NO07G04170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G04170.1.cds1NO07G04170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G04170.1 ID=NO07G04170.1|Name=NO07G04170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1756bp
AGAGGGGGAGGGATAAAAGGGAGGGAGGCAGTGTGGGCGTAGAGAAAGGA
AAACAAAGTCATGTTGTAAGGGAGAGAACGAGAAGAGAAGGGGACGAATG
TGTTGTGAAATAGAGTGAGTGTGTAAAAAAAGAGGGCATAATGATAAAAA
AAGGCGGTGGGAGGGAGTGGAAGAAAGAGAAGGAATATGGACGGGGAAAG
GAATGTGGACCCTAGTTCAGAGAGAGGGAAAGAGGGCAAGGTGTGGACGA
GGAAAAGGGAATGTGCATGACCATGGAGAGGAAGACAAGGCGGAAGAGGA
TAGTACGGAGGAGGAGGAGACGGGGATGAAGGAGGTAGAGCACGAGGATG
ACTTCGCACAGCAAAAAGCCAGCCACAGATTAGATTATTATTATTATCCT
CTGTAGGTTGAAAAGGGGAAGGGGGAACAGCTGAATGAGAATGGCTAGAA
AGTGTCGCTGATGTCTGTATTTAAAGCAACGCAGGACAAGTAATGGGTAT
TTGATGAAGAAAAGATGAAATGTGGGTATAGTATAGGAACACGATAATTA
TGAAGTGAAGGAGGTAGTTTTAAGCGCGGTAGCTCTTATTATGTAACGCA
GGACTGACGCGCCTCCATATTCTTCTACAGACCGTCTCTCTCAAGAAAGT
CTCATTTGCACACAACCCTTATCCCCCGACAGAACTCACAGATCCATGAT
CATCCTCACGTTTTGTCCGCTCCTCCTCCTTGTATTTCTTACGCCCGCCA
ACGCCGACCTGGCTCTTCTCCCTACCCGGGATGCTGCCCGAAGAATGACC
TGGGCACAGCTCGACCAAATTTTTAAGGAAGGCACAATCGATGAAGGCAT
TCCCGAGGGTTTCTCGTATGGCTACGGCCTGGTCAACCCCTCCTATCCTG
GGTTTTACCAGAGGGCTGCAGACATGTTTTGGAACGGCAAGCGGTTCGAA
GCCAAATCGGGGGAGAACTGTCATGGCCGAGACTGCGGCCAAAAGGGTGT
GGTGTTCAACTATCTGAGCGTGGTCGATCACGTCAACTGGCAAGAAATTC
CCGGAGCTGCTTTGATTGGCCAGCTGAAGGACGGCGACCCCTCCTTGGCC
CCGCTCCAGCTCGACGACAAGCCCTCCGTCCTAATCGACTACCATCGAGT
CGGCGGCTCGTACGACGAGCTCCGCTTGGTGAACAGTAAAGAACGAATCT
ATCTCGGGCGAGGCCTGGATTGGCTCATGCCGGAGGTGCTTGCGTACTTT
GTGATTCAGTTCTACGACACTCCTGAAAGAAAAGAATTGGCGCTTGGCAC
GCGTTGCTATTACCAGGCACGCGAAAGTGCTCGCCTTGCAGCAGGTACCA
CGGAAGGATCGAATCGAGAGCAGATACTGCAAGCGACGCCAGAAAACTCG
TGGAAATGGGAGGGGCTGGACACGGAGGGAGTTATGACAGCAGTGACGGT
TGGCATGTCCGGCGGAGGAGACACAAGCTGTCCAGAGATGCTGGAGCGAT
TGGGAGAGCGCCTTCGAGGGGCGGTAAGAAGTGCAGGAGTGAACAAAGGC
AACTAAGCATTTGCGGAAGCAGAAAGTATAGCAGGGTGGATTGTTATAAG
AAATGGTTTTAAGAGCGATGGTCATAAAGAAGAAGATGGGGGAAAAGCAC
GGACTGTACAGAAGATTATGTAAGTTTTTTGCTCTTTTTCTTCTCTGGGG
TTTTAATCACCATCACGTGCTGTGCCACCGGCATGATGGCAGGAGGAGAA
GAAGAG
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protein sequence of NO07G04170.1

>NO07G04170.1-protein ID=NO07G04170.1-protein|Name=NO07G04170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MIILTFCPLLLLVFLTPANADLALLPTRDAARRMTWAQLDQIFKEGTIDE
GIPEGFSYGYGLVNPSYPGFYQRAADMFWNGKRFEAKSGENCHGRDCGQK
GVVFNYLSVVDHVNWQEIPGAALIGQLKDGDPSLAPLQLDDKPSVLIDYH
RVGGSYDELRLVNSKERIYLGRGLDWLMPEVLAYFVIQFYDTPERKELAL
GTRCYYQARESARLAAGTTEGSNREQILQATPENSWKWEGLDTEGVMTAV
TVGMSGGGDTSCPEMLERLGERLRGAVRSAGVNKGN*
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mRNA from alignment at chr7:1158822..1160577+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G04170.1 ID=NO07G04170.1|Name=NO07G04170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1756bp|location=Sequence derived from alignment at chr7:1158822..1160577+ (Nannochloropsis oceanica)
AGAGGGGGAGGGATAAAAGGGAGGGAGGCAGTGTGGGCGTAGAGAAAGGA
AAACAAAGTCATGTTGTAAGGGAGAGAACGAGAAGAGAAGGGGACGAATG
TGTTGTGAAATAGAGTGAGTGTGTAAAAAAAGAGGGCATAATGATAAAAA
AAGGCGGTGGGAGGGAGTGGAAGAAAGAGAAGGAATATGGACGGGGAAAG
GAATGTGGACCCTAGTTCAGAGAGAGGGAAAGAGGGCAAGGTGTGGACGA
GGAAAAGGGAATGTGCATGACCATGGAGAGGAAGACAAGGCGGAAGAGGA
TAGTACGGAGGAGGAGGAGACGGGGATGAAGGAGGTAGAGCACGAGGATG
ACTTCGCACAGCAAAAAGCCAGCCACAGATTAGATTATTATTATTATCCT
CTGTAGGTTGAAAAGGGGAAGGGGGAACAGCTGAATGAGAATGGCTAGAA
AGTGTCGCTGATGTCTGTATTTAAAGCAACGCAGGACAAGTAATGGGTAT
TTGATGAAGAAAAGATGAAATGTGGGTATAGTATAGGAACACGATAATTA
TGAAGTGAAGGAGGTAGTTTTAAGCGCGGTAGCTCTTATTATGTAACGCA
GGACTGACGCGCCTCCATATTCTTCTACAGACCGTCTCTCTCAAGAAAGT
CTCATTTGCACACAACCCTTATCCCCCGACAGAACTCACAGATCCATGAT
CATCCTCACGTTTTGTCCGCTCCTCCTCCTTGTATTTCTTACGCCCGCCA
ACGCCGACCTGGCTCTTCTCCCTACCCGGGATGCTGCCCGAAGAATGACC
TGGGCACAGCTCGACCAAATTTTTAAGGAAGGCACAATCGATGAAGGCAT
TCCCGAGGGTTTCTCGTATGGCTACGGCCTGGTCAACCCCTCCTATCCTG
GGTTTTACCAGAGGGCTGCAGACATGTTTTGGAACGGCAAGCGGTTCGAA
GCCAAATCGGGGGAGAACTGTCATGGCCGAGACTGCGGCCAAAAGGGTGT
GGTGTTCAACTATCTGAGCGTGGTCGATCACGTCAACTGGCAAGAAATTC
CCGGAGCTGCTTTGATTGGCCAGCTGAAGGACGGCGACCCCTCCTTGGCC
CCGCTCCAGCTCGACGACAAGCCCTCCGTCCTAATCGACTACCATCGAGT
CGGCGGCTCGTACGACGAGCTCCGCTTGGTGAACAGTAAAGAACGAATCT
ATCTCGGGCGAGGCCTGGATTGGCTCATGCCGGAGGTGCTTGCGTACTTT
GTGATTCAGTTCTACGACACTCCTGAAAGAAAAGAATTGGCGCTTGGCAC
GCGTTGCTATTACCAGGCACGCGAAAGTGCTCGCCTTGCAGCAGGTACCA
CGGAAGGATCGAATCGAGAGCAGATACTGCAAGCGACGCCAGAAAACTCG
TGGAAATGGGAGGGGCTGGACACGGAGGGAGTTATGACAGCAGTGACGGT
TGGCATGTCCGGCGGAGGAGACACAAGCTGTCCAGAGATGCTGGAGCGAT
TGGGAGAGCGCCTTCGAGGGGCGGTAAGAAGTGCAGGAGTGAACAAAGGC
AACTAAGCATTTGCGGAAGCAGAAAGTATAGCAGGGTGGATTGTTATAAG
AAATGGTTTTAAGAGCGATGGTCATAAAGAAGAAGATGGGGGAAAAGCAC
GGACTGTACAGAAGATTATGTAAGTTTTTTGCTCTTTTTCTTCTCTGGGG
TTTTAATCACCATCACGTGCTGTGCCACCGGCATGATGGCAGGAGGAGAA
GAAGAG
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Coding sequence (CDS) from alignment at chr7:1158822..1160577+

>NO07G04170.1 ID=NO07G04170.1|Name=NO07G04170.1|organism=Nannochloropsis oceanica|type=CDS|length=861bp|location=Sequence derived from alignment at chr7:1158822..1160577+ (Nannochloropsis oceanica)
ATGATCATCCTCACGTTTTGTCCGCTCCTCCTCCTTGTATTTCTTACGCC
CGCCAACGCCGACCTGGCTCTTCTCCCTACCCGGGATGCTGCCCGAAGAA
TGACCTGGGCACAGCTCGACCAAATTTTTAAGGAAGGCACAATCGATGAA
GGCATTCCCGAGGGTTTCTCGTATGGCTACGGCCTGGTCAACCCCTCCTA
TCCTGGGTTTTACCAGAGGGCTGCAGACATGTTTTGGAACGGCAAGCGGT
TCGAAGCCAAATCGGGGGAGAACTGTCATGGCCGAGACTGCGGCCAAAAG
GGTGTGGTGTTCAACTATCTGAGCGTGGTCGATCACGTCAACTGGCAAGA
AATTCCCGGAGCTGCTTTGATTGGCCAGCTGAAGGACGGCGACCCCTCCT
TGGCCCCGCTCCAGCTCGACGACAAGCCCTCCGTCCTAATCGACTACCAT
CGAGTCGGCGGCTCGTACGACGAGCTCCGCTTGGTGAACAGTAAAGAACG
AATCTATCTCGGGCGAGGCCTGGATTGGCTCATGCCGGAGGTGCTTGCGT
ACTTTGTGATTCAGTTCTACGACACTCCTGAAAGAAAAGAATTGGCGCTT
GGCACGCGTTGCTATTACCAGGCACGCGAAAGTGCTCGCCTTGCAGCAGG
TACCACGGAAGGATCGAATCGAGAGCAGATACTGCAAGCGACGCCAGAAA
ACTCGTGGAAATGGGAGGGGCTGGACACGGAGGGAGTTATGACAGCAGTG
ACGGTTGGCATGTCCGGCGGAGGAGACACAAGCTGTCCAGAGATGCTGGA
GCGATTGGGAGAGCGCCTTCGAGGGGCGGTAAGAAGTGCAGGAGTGAACA
AAGGCAACTAA
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Synonyms
Publications