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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:1148405..1151095 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G04110.1 vs.
Match: WP_012772681.1 (S-layer protein [Paenibacillus sp. JDR-2]; ACS99359.1 S-layer domain protein [Paenibacillus sp. JDR-2]) HSP 1 Score: 282.0 bits (720), Expect = 6.700e-72 Identity = 179/485 (36.91%), Postives = 239/485 (49.28%), Query Frame = 0
Query: 70 FYFVSFNIPELTFIQDP-WRLPTRWEQTDALRSVLHQGGRVARPYTLSIEDKIVHPDPARRCHVEWDPKSQKFCLNEQYMQVLDQALDVAREMGIRLILPLIDQWTWVGGVESMARWRGFVGKDCARAFWEEDVCLQDWGEVIRAVVGRRNTINGALYREDPTILAWETGNEL-DCPSAWTIRMARIIKEADECRHLVIDGHHGVDPGVLGEESIDIVSRHYYPSGDGSTADSPILSSITTCTLPPSSFVDALFSDLHACQGKKPFFVGEFGFASLSSTASFLSTLVAQAQAGQGVIGACLWSLRFRSFRGGFYFHEEPWGFNVFW-AYHWPGFPSGDRYDERGMMSLLHTYGHLCFSHDSGIGQNSNSKPCVSLPSIPFSLPLPVPAPPRLLSVTAQGLLTFRGSTSARSYELHRCRDIENGGGRGERRGGGDWMVVERGVIDSWVPEQGQVLDKSLMRSPPSDFFYRLVAVNETGCSKPSGVL 552
F F+S N+P L+ ++D WR PT WEQ DA ++++ GG V RPY LS+ D R H+ K NE D+ + +A E GI LILP +DQ+ W GG+ A +RG KD AFW + + D+ VI + R NT G Y++DPTILAWETGNEL S+WT MA IK D HLV+DG +G+D L +++IDIVS HYYP S+ + D + GKKPF VGEFGF + +FL + G GA +WSLR+ S GGFY H E VF+ AY WPGFPSGD +DE M++ L D S+P PS LP P P +L V + +++ GS A SY + R + G W V V D+ VP + Q+ D + + S ++YR+ A N G S PS V+
Sbjct: 62 FRFISANVPTLSMVEDIYWRTPTEWEQEDAFKTLVQMGGTVTRPYVLSVRKADDPADMVR--HIMGVGSDDKLIFNEDAFVAYDKMIQLAGEYGIHLILPFVDQYQWQGGIAEYAAFRG-KSKD---AFWTDPQLIADFKSVISYTLNRVNTFTGVAYKDDPTILAWETGNELVPQSSSWTHDMATYIKSID-ANHLVLDGKYGIDDASLTDDAIDIVSNHYYPD-------------------HYPSYASQVNVDKNKAAGKKPFIVGEFGFKPTNELGAFLDNAIE-----NGTSGAMIWSLRYHSRDGGFYPHTESTFNGVFYGAYRWPGFPSGDGFDETNMLNTL---------RDKAFEIRGISEP----PS------LPKPDAPVMLPVDSVSTISWLGSVGASSYRVERSEQPDRG-----------WTTVGENVYDA-VPTESQLFDDTSAVTGQS-YYYRVTAKNSAGESAPSAVI 483
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G04110.1 ID=NO07G04110.1|Name=NO07G04110.1|organism=Nannochloropsis oceanica|type=mRNA|length=2691bp ATGGCTGCGCCTCCACCCCTCCCGTTCATCAAACGCCGCGGGCTGGTACT CTATGAAGATGATAATGCCGTCGCCACGACAAGCACAGCATCAGCCTCCA CGAATTCTTCCCGCTCGCTGCTTCCGGGAAGCGACGACAGCCCTCCCAGC ACAAGCACGGATCGAGCCCTCGCACCCACCTGTACCATACCACCGATGAT CTATCCGTTCTACTTTGTATCCTTCAATATTCCCGAGCTAACCTTTATCC AAGACCCCTGGCGGCTCCCCACCCGGTGGGAGCAGACAGACGCTTTGCGC TCAGTTCTCCACCAAGGGGGGCGGGTGGCGCGGCCCTATACCTTGTCCAT TGAAGACAAGATCGTCCATCCTGACCCTGCTCGACGATGTCACGTAGAAT GGGATCCGAAGTCTCAGAAATTCTGTCTCAACGAGCAGTACATGCAAGTC TTGGACCAGGCCTTGGACGTGGCAAGAGAAATGGGTATTCGATTAATCCT TCCGCTTATCGACCAGTGGACATGGGTGGGTGGAGTGGAAAGTATGGCGA GATGGCGTGGGTTTGTAGGCAAGGACTGCGCAAGGGCTTTTTGGGAGGAA GATGTGTGCTTGCAAGATTGGGGCGAGGTGATCAGGGCGGTGGTGGGGAG GAGGAATACAATAAATGGTGCATTGTACCGGGAGGACCCCACCATCCTCG CGTGGGAAACGGGAAATGAATTGGACTGTCCCTCTGCATGGACGATTCGC ATGGCGAGGATCATCAAGGAGGCGGATGAATGCAGACATTTGGTGATTGA TGGCCACCACGGCGTAGACCCGGGCGTGCTGGGCGAGGAATCGATTGACA TTGTCTCCCGTCATTATTATCCTTCGGGTGATGGGAGCACTGCTGACTCC CCCATCCTCTCTTCCATCACCACATGCACCCTCCCTCCCTCATCCTTCGT AGATGCCCTCTTCTCTGATCTCCACGCGTGCCAGGGCAAGAAGCCTTTCT TCGTGGGTGAGTTTGGATTCGCCTCTCTCTCGTCCACGGCCTCTTTCCTC TCCACCCTCGTTGCTCAAGCCCAAGCTGGACAAGGCGTCATTGGTGCCTG CCTCTGGAGCCTTCGCTTCCGATCTTTTCGCGGTGGCTTCTACTTTCACG AAGAGCCCTGGGGTTTCAATGTCTTTTGGGCCTACCACTGGCCCGGCTTT CCTTCCGGCGACCGCTACGACGAAAGAGGGATGATGTCACTGCTGCACAC CTACGGCCATCTCTGCTTCTCCCATGACAGCGGCATAGGGCAAAATAGCA ACAGCAAACCCTGTGTCTCTTTGCCTTCCATCCCTTTCTCACTTCCTCTT CCCGTGCCTGCCCCACCACGTCTTTTGTCTGTGACAGCCCAAGGCCTTCT CACCTTCCGGGGATCCACCAGCGCCCGTAGCTACGAGTTACATCGCTGTC GCGATATAGAGAACGGAGGAGGAAGGGGGGAAAGACGGGGAGGGGGGGAC TGGATGGTGGTGGAAAGAGGGGTGATAGATTCTTGGGTTCCGGAGCAAGG GCAGGTGTTGGACAAGAGCTTAATGCGCTCCCCGCCGTCAGATTTCTTTT ATCGCCTAGTGGCCGTGAATGAAACAGGGTGCTCCAAGCCTTCGGGTGTG TTGCCGTTGCAGCTCCCGAGGGTAGGAGAGGGGGCAACACTGGCTCCTAC GGTGTATTACTTTATCGAAGAAACATCGCAGCATGTCATGCTGGTGGGAC GACGCAATGTACTACCTCCTTCGCTTTTATGGGGATCGGAGCATGGGGAG GGTGAGGGGAAGGGGGAAGGAGGGGAGGAAGGCTGGTTGACGCGTGATTT GACGAAATGTATGGGGTTTCCCCGCGCGGCTGAGGGAGGAAGGGTGTGCG CGCTGGGTCCGGAAGAAGAGGGGTGGCTGGTGTATGGAGGGTGGGACGGG CACTTGGTCGAGGCGGACATTCAGAGCCGACGTGTCGTTAATCACCCACT CATTATTCGGGGTTCCCCCACTGTGTGGCGGGCGCCGACCTCAAAGGCAA GTCCTGACTCACTTGCTCGGGCCTGGGTGCGAGACGCGGAGATGGACAGG CTGTTAATGTTGTCCTTTGACATCGTGCGCGAGAAAAACACCTTAAAAGT AGAGGATGTCGCGTTCGACGGTCCAGAACTGCCAAGATTGGGCGGCGACC CTGTGGCGGTGAGTGCCAGAGAGGTTTGCTATGTGGGACATGACCAACGC TTATACCGAATAATGTTTTCGTTCGATGAGTCCTATTCACAAGAGAAGGA AGGGAGGGGGGGAGATAAAAGGGTGTCGTTCAAGTACACATTGGTTGACC ACTCGGTCCGGTCGGGGATTCATGTTCGGAGGGGAGATGAGTTGCAGATT TTGGGCTGTCAAAAAGTGATATATGTCAGTGCGGAGGGAAAGGGGCACAT AATTGAGGAATCGAGGGCGGATGGGACGAGCGAGGAGGCGTGGCTTGTGA CGGATCACACGGTACTACATGGGGCGTCGCCACCAGTGGTGGGGAGTGTC CGGGTGTTTCCACACCCCGTGGTCCAGGTGTCGTTTCAGAGTGCAGCCGA CCGGCATTGGTATGAGTTATGGTGGGCGGGAGAGAGCTGGCGGGTCAGTC GGGAGGTGGGTGGTGATGAGGTGGTAAAGCCTTGTCGTTAA back to topprotein sequence of NO07G04110.1 >NO07G04110.1-protein ID=NO07G04110.1-protein|Name=NO07G04110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=897bp MAAPPPLPFIKRRGLVLYEDDNAVATTSTASASTNSSRSLLPGSDDSPPS TSTDRALAPTCTIPPMIYPFYFVSFNIPELTFIQDPWRLPTRWEQTDALR SVLHQGGRVARPYTLSIEDKIVHPDPARRCHVEWDPKSQKFCLNEQYMQV LDQALDVAREMGIRLILPLIDQWTWVGGVESMARWRGFVGKDCARAFWEE DVCLQDWGEVIRAVVGRRNTINGALYREDPTILAWETGNELDCPSAWTIR MARIIKEADECRHLVIDGHHGVDPGVLGEESIDIVSRHYYPSGDGSTADS PILSSITTCTLPPSSFVDALFSDLHACQGKKPFFVGEFGFASLSSTASFL STLVAQAQAGQGVIGACLWSLRFRSFRGGFYFHEEPWGFNVFWAYHWPGF PSGDRYDERGMMSLLHTYGHLCFSHDSGIGQNSNSKPCVSLPSIPFSLPL PVPAPPRLLSVTAQGLLTFRGSTSARSYELHRCRDIENGGGRGERRGGGD WMVVERGVIDSWVPEQGQVLDKSLMRSPPSDFFYRLVAVNETGCSKPSGV LPLQLPRVGEGATLAPTVYYFIEETSQHVMLVGRRNVLPPSLLWGSEHGE GEGKGEGGEEGWLTRDLTKCMGFPRAAEGGRVCALGPEEEGWLVYGGWDG HLVEADIQSRRVVNHPLIIRGSPTVWRAPTSKASPDSLARAWVRDAEMDR LLMLSFDIVREKNTLKVEDVAFDGPELPRLGGDPVAVSAREVCYVGHDQR LYRIMFSFDESYSQEKEGRGGDKRVSFKYTLVDHSVRSGIHVRRGDELQI LGCQKVIYVSAEGKGHIIEESRADGTSEEAWLVTDHTVLHGASPPVVGSV RVFPHPVVQVSFQSAADRHWYELWWAGESWRVSREVGGDEVVKPCR* back to topmRNA from alignment at chr7:1148405..1151095+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G04110.1 ID=NO07G04110.1|Name=NO07G04110.1|organism=Nannochloropsis oceanica|type=mRNA|length=2691bp|location=Sequence derived from alignment at chr7:1148405..1151095+ (Nannochloropsis oceanica) ATGGCTGCGCCTCCACCCCTCCCGTTCATCAAACGCCGCGGGCTGGTACT
CTATGAAGATGATAATGCCGTCGCCACGACAAGCACAGCATCAGCCTCCA
CGAATTCTTCCCGCTCGCTGCTTCCGGGAAGCGACGACAGCCCTCCCAGC
ACAAGCACGGATCGAGCCCTCGCACCCACCTGTACCATACCACCGATGAT
CTATCCGTTCTACTTTGTATCCTTCAATATTCCCGAGCTAACCTTTATCC
AAGACCCCTGGCGGCTCCCCACCCGGTGGGAGCAGACAGACGCTTTGCGC
TCAGTTCTCCACCAAGGGGGGCGGGTGGCGCGGCCCTATACCTTGTCCAT
TGAAGACAAGATCGTCCATCCTGACCCTGCTCGACGATGTCACGTAGAAT
GGGATCCGAAGTCTCAGAAATTCTGTCTCAACGAGCAGTACATGCAAGTC
TTGGACCAGGCCTTGGACGTGGCAAGAGAAATGGGTATTCGATTAATCCT
TCCGCTTATCGACCAGTGGACATGGGTGGGTGGAGTGGAAAGTATGGCGA
GATGGCGTGGGTTTGTAGGCAAGGACTGCGCAAGGGCTTTTTGGGAGGAA
GATGTGTGCTTGCAAGATTGGGGCGAGGTGATCAGGGCGGTGGTGGGGAG
GAGGAATACAATAAATGGTGCATTGTACCGGGAGGACCCCACCATCCTCG
CGTGGGAAACGGGAAATGAATTGGACTGTCCCTCTGCATGGACGATTCGC
ATGGCGAGGATCATCAAGGAGGCGGATGAATGCAGACATTTGGTGATTGA
TGGCCACCACGGCGTAGACCCGGGCGTGCTGGGCGAGGAATCGATTGACA
TTGTCTCCCGTCATTATTATCCTTCGGGTGATGGGAGCACTGCTGACTCC
CCCATCCTCTCTTCCATCACCACATGCACCCTCCCTCCCTCATCCTTCGT
AGATGCCCTCTTCTCTGATCTCCACGCGTGCCAGGGCAAGAAGCCTTTCT
TCGTGGGTGAGTTTGGATTCGCCTCTCTCTCGTCCACGGCCTCTTTCCTC
TCCACCCTCGTTGCTCAAGCCCAAGCTGGACAAGGCGTCATTGGTGCCTG
CCTCTGGAGCCTTCGCTTCCGATCTTTTCGCGGTGGCTTCTACTTTCACG
AAGAGCCCTGGGGTTTCAATGTCTTTTGGGCCTACCACTGGCCCGGCTTT
CCTTCCGGCGACCGCTACGACGAAAGAGGGATGATGTCACTGCTGCACAC
CTACGGCCATCTCTGCTTCTCCCATGACAGCGGCATAGGGCAAAATAGCA
ACAGCAAACCCTGTGTCTCTTTGCCTTCCATCCCTTTCTCACTTCCTCTT
CCCGTGCCTGCCCCACCACGTCTTTTGTCTGTGACAGCCCAAGGCCTTCT
CACCTTCCGGGGATCCACCAGCGCCCGTAGCTACGAGTTACATCGCTGTC
GCGATATAGAGAACGGAGGAGGAAGGGGGGAAAGACGGGGAGGGGGGGAC
TGGATGGTGGTGGAAAGAGGGGTGATAGATTCTTGGGTTCCGGAGCAAGG
GCAGGTGTTGGACAAGAGCTTAATGCGCTCCCCGCCGTCAGATTTCTTTT
ATCGCCTAGTGGCCGTGAATGAAACAGGGTGCTCCAAGCCTTCGGGTGTG
TTGCCGTTGCAGCTCCCGAGGGTAGGAGAGGGGGCAACACTGGCTCCTAC
GGTGTATTACTTTATCGAAGAAACATCGCAGCATGTCATGCTGGTGGGAC
GACGCAATGTACTACCTCCTTCGCTTTTATGGGGATCGGAGCATGGGGAG
GGTGAGGGGAAGGGGGAAGGAGGGGAGGAAGGCTGGTTGACGCGTGATTT
GACGAAATGTATGGGGTTTCCCCGCGCGGCTGAGGGAGGAAGGGTGTGCG
CGCTGGGTCCGGAAGAAGAGGGGTGGCTGGTGTATGGAGGGTGGGACGGG
CACTTGGTCGAGGCGGACATTCAGAGCCGACGTGTCGTTAATCACCCACT
CATTATTCGGGGTTCCCCCACTGTGTGGCGGGCGCCGACCTCAAAGGCAA
GTCCTGACTCACTTGCTCGGGCCTGGGTGCGAGACGCGGAGATGGACAGG
CTGTTAATGTTGTCCTTTGACATCGTGCGCGAGAAAAACACCTTAAAAGT
AGAGGATGTCGCGTTCGACGGTCCAGAACTGCCAAGATTGGGCGGCGACC
CTGTGGCGGTGAGTGCCAGAGAGGTTTGCTATGTGGGACATGACCAACGC
TTATACCGAATAATGTTTTCGTTCGATGAGTCCTATTCACAAGAGAAGGA
AGGGAGGGGGGGAGATAAAAGGGTGTCGTTCAAGTACACATTGGTTGACC
ACTCGGTCCGGTCGGGGATTCATGTTCGGAGGGGAGATGAGTTGCAGATT
TTGGGCTGTCAAAAAGTGATATATGTCAGTGCGGAGGGAAAGGGGCACAT
AATTGAGGAATCGAGGGCGGATGGGACGAGCGAGGAGGCGTGGCTTGTGA
CGGATCACACGGTACTACATGGGGCGTCGCCACCAGTGGTGGGGAGTGTC
CGGGTGTTTCCACACCCCGTGGTCCAGGTGTCGTTTCAGAGTGCAGCCGA
CCGGCATTGGTATGAGTTATGGTGGGCGGGAGAGAGCTGGCGGGTCAGTC
GGGAGGTGGGTGGTGATGAGGTGGTAAAGCCTTGTCGTTAA back to topCoding sequence (CDS) from alignment at chr7:1148405..1151095+ >NO07G04110.1 ID=NO07G04110.1|Name=NO07G04110.1|organism=Nannochloropsis oceanica|type=CDS|length=2691bp|location=Sequence derived from alignment at chr7:1148405..1151095+ (Nannochloropsis oceanica) ATGGCTGCGCCTCCACCCCTCCCGTTCATCAAACGCCGCGGGCTGGTACT CTATGAAGATGATAATGCCGTCGCCACGACAAGCACAGCATCAGCCTCCA CGAATTCTTCCCGCTCGCTGCTTCCGGGAAGCGACGACAGCCCTCCCAGC ACAAGCACGGATCGAGCCCTCGCACCCACCTGTACCATACCACCGATGAT CTATCCGTTCTACTTTGTATCCTTCAATATTCCCGAGCTAACCTTTATCC AAGACCCCTGGCGGCTCCCCACCCGGTGGGAGCAGACAGACGCTTTGCGC TCAGTTCTCCACCAAGGGGGGCGGGTGGCGCGGCCCTATACCTTGTCCAT TGAAGACAAGATCGTCCATCCTGACCCTGCTCGACGATGTCACGTAGAAT GGGATCCGAAGTCTCAGAAATTCTGTCTCAACGAGCAGTACATGCAAGTC TTGGACCAGGCCTTGGACGTGGCAAGAGAAATGGGTATTCGATTAATCCT TCCGCTTATCGACCAGTGGACATGGGTGGGTGGAGTGGAAAGTATGGCGA GATGGCGTGGGTTTGTAGGCAAGGACTGCGCAAGGGCTTTTTGGGAGGAA GATGTGTGCTTGCAAGATTGGGGCGAGGTGATCAGGGCGGTGGTGGGGAG GAGGAATACAATAAATGGTGCATTGTACCGGGAGGACCCCACCATCCTCG CGTGGGAAACGGGAAATGAATTGGACTGTCCCTCTGCATGGACGATTCGC ATGGCGAGGATCATCAAGGAGGCGGATGAATGCAGACATTTGGTGATTGA TGGCCACCACGGCGTAGACCCGGGCGTGCTGGGCGAGGAATCGATTGACA TTGTCTCCCGTCATTATTATCCTTCGGGTGATGGGAGCACTGCTGACTCC CCCATCCTCTCTTCCATCACCACATGCACCCTCCCTCCCTCATCCTTCGT AGATGCCCTCTTCTCTGATCTCCACGCGTGCCAGGGCAAGAAGCCTTTCT TCGTGGGTGAGTTTGGATTCGCCTCTCTCTCGTCCACGGCCTCTTTCCTC TCCACCCTCGTTGCTCAAGCCCAAGCTGGACAAGGCGTCATTGGTGCCTG CCTCTGGAGCCTTCGCTTCCGATCTTTTCGCGGTGGCTTCTACTTTCACG AAGAGCCCTGGGGTTTCAATGTCTTTTGGGCCTACCACTGGCCCGGCTTT CCTTCCGGCGACCGCTACGACGAAAGAGGGATGATGTCACTGCTGCACAC CTACGGCCATCTCTGCTTCTCCCATGACAGCGGCATAGGGCAAAATAGCA ACAGCAAACCCTGTGTCTCTTTGCCTTCCATCCCTTTCTCACTTCCTCTT CCCGTGCCTGCCCCACCACGTCTTTTGTCTGTGACAGCCCAAGGCCTTCT CACCTTCCGGGGATCCACCAGCGCCCGTAGCTACGAGTTACATCGCTGTC GCGATATAGAGAACGGAGGAGGAAGGGGGGAAAGACGGGGAGGGGGGGAC TGGATGGTGGTGGAAAGAGGGGTGATAGATTCTTGGGTTCCGGAGCAAGG GCAGGTGTTGGACAAGAGCTTAATGCGCTCCCCGCCGTCAGATTTCTTTT ATCGCCTAGTGGCCGTGAATGAAACAGGGTGCTCCAAGCCTTCGGGTGTG TTGCCGTTGCAGCTCCCGAGGGTAGGAGAGGGGGCAACACTGGCTCCTAC GGTGTATTACTTTATCGAAGAAACATCGCAGCATGTCATGCTGGTGGGAC GACGCAATGTACTACCTCCTTCGCTTTTATGGGGATCGGAGCATGGGGAG GGTGAGGGGAAGGGGGAAGGAGGGGAGGAAGGCTGGTTGACGCGTGATTT GACGAAATGTATGGGGTTTCCCCGCGCGGCTGAGGGAGGAAGGGTGTGCG CGCTGGGTCCGGAAGAAGAGGGGTGGCTGGTGTATGGAGGGTGGGACGGG CACTTGGTCGAGGCGGACATTCAGAGCCGACGTGTCGTTAATCACCCACT CATTATTCGGGGTTCCCCCACTGTGTGGCGGGCGCCGACCTCAAAGGCAA GTCCTGACTCACTTGCTCGGGCCTGGGTGCGAGACGCGGAGATGGACAGG CTGTTAATGTTGTCCTTTGACATCGTGCGCGAGAAAAACACCTTAAAAGT AGAGGATGTCGCGTTCGACGGTCCAGAACTGCCAAGATTGGGCGGCGACC CTGTGGCGGTGAGTGCCAGAGAGGTTTGCTATGTGGGACATGACCAACGC TTATACCGAATAATGTTTTCGTTCGATGAGTCCTATTCACAAGAGAAGGA AGGGAGGGGGGGAGATAAAAGGGTGTCGTTCAAGTACACATTGGTTGACC ACTCGGTCCGGTCGGGGATTCATGTTCGGAGGGGAGATGAGTTGCAGATT TTGGGCTGTCAAAAAGTGATATATGTCAGTGCGGAGGGAAAGGGGCACAT AATTGAGGAATCGAGGGCGGATGGGACGAGCGAGGAGGCGTGGCTTGTGA CGGATCACACGGTACTACATGGGGCGTCGCCACCAGTGGTGGGGAGTGTC CGGGTGTTTCCACACCCCGTGGTCCAGGTGTCGTTTCAGAGTGCAGCCGA CCGGCATTGGTATGAGTTATGGTGGGCGGGAGAGAGCTGGCGGGTCAGTC GGGAGGTGGGTGGTGATGAGGTGGTAAAGCCTTGTCGTTAA back to top
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