NO07G04020.1, NO07G04020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G04020.1
Unique NameNO07G04020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2331
Alignment locationchr7:1119606..1122428 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1119606..1122428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G04020.1 vs.
Match: XP_005853364.1 (smu-1 suppressor of mec-8 and unc-52-like protein, partial [Nannochloropsis gaditana CCMP526]; EKU22999.1 smu-1 suppressor of mec-8 and unc-52-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 781.6 bits (2017), Expect = 1.400e-222
Identity = 385/461 (83.51%), Postives = 423/461 (91.76%), Query Frame = 0 
Query:   17 LTISTTMSAPSPSSASGVYEVEASDVIKLILQFCKENHLLHTLQTLQTEAQVAMNTVDSMENFLADITQGRWDTVLPQVAGLQLPQEKLSAVYEQVCLELIEMRENDLAREMLRTTEPLQVLKIQEPDRYFRLETFLNRNIHDAHELYTYGINKERKRQEIADSLAAEVSVVPPSRLLSLLQQALKYQQLQGTLPKDRRYDLFRGGARTRSKDEMEKPPKKQMGQIKFGSKTHPECARFSPDGQHLVTGSLDGFVEVWDPDTCRLRKELPYQAREELMMHDTAVLSLTFSRDGEMLATGDTEGVVKIWKISSGKCLRKLDPAHAKGITSLAFSRDSLQLATASFDGTARLHGIKAGRVLKEFRGHTSFVNCVCFTQDGSRVLTGSSDGTVKVWDARTSDCLHTFRPAMEKVTEMEAMVHTVLPLPGPTDLFFVANRTATAYVTTAQGQVVKSMSSGKKVGG 478
            L I + MS+   S+ASGVYEVEASDVIKLILQFCKEN+L  TL TLQ+E+QVAMN+VDSMENFL+D+TQGRWD+VLPQ AGLQLPQ+KL A+YEQVCLELIEMRE +LAREMLRTTEPLQ+LK Q+PDRYFRLETFLNR IHDA ELY YG+NKER+RQEIADSLA EVSVVPPSRLL+LLQQAL+YQQLQG LPKDRRYDLFRG AR+  KDE E+PPKKQ GQIKFGSKTHPECARFSPDG  LVTGSLDGFVEVWDPDTCRLRK+LPYQAREELMMHD AVL+L FSRDGEMLATGDT+G VK+WK+SSGKCLR L  AH+KGITSLAFSRDSLQLATASFDGTARLHG+KAGRVLKEFRGH+SFVNC+CFTQDGSR+LTGSSDGTVKVWDAR+S+CLHTFRP +E   ++EAMVHTVLPLPG  DLFF+ANRT+TAYVTTAQGQVVK MSSGKKVGG
Sbjct:   44 LPIPSRMSSLPTSAASGVYEVEASDVIKLILQFCKENNLHRTLHTLQSESQVAMNSVDSMENFLSDVTQGRWDSVLPQAAGLQLPQDKLLALYEQVCLELIEMRETELAREMLRTTEPLQLLKTQDPDRYFRLETFLNRKIHDAQELYAYGLNKERRRQEIADSLAVEVSVVPPSRLLALLQQALRYQQLQGNLPKDRRYDLFRGSARSAGKDEAERPPKKQAGQIKFGSKTHPECARFSPDGLQLVTGSLDGFVEVWDPDTCRLRKDLPYQAREELMMHDAAVLALAFSRDGEMLATGDTDGAVKVWKLSSGKCLRHLPHAHSKGITSLAFSRDSLQLATASFDGTARLHGVKAGRVLKEFRGHSSFVNCICFTQDGSRLLTGSSDGTVKVWDARSSECLHTFRPGVESAVDLEAMVHTVLPLPGGADLFFIANRTSTAYVTTAQGQVVKRMSSGKKVGG 504
The following BLAST results are available for this feature:
BLAST of NO07G04020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853364.11.400e-22283.51smu-1 suppressor of mec-8 and unc-52-like protein,... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G04020NO07G04020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G04020.1NO07G04020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G04020.1.cds1NO07G04020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04020.1.cds2NO07G04020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04020.1.cds3NO07G04020.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04020.1.cds4NO07G04020.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04020.1.cds5NO07G04020.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G04020.1 ID=NO07G04020.1|Name=NO07G04020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2331bp
TGGGGAGGTCGAATGAGAGGGATTGTGGCCGGGTTACAAAGGCGGAGATG
GAGGATTTCGACACACGCCACTACCACGAGTATGACAAGAAGTTTGTACA
GCGTTTATCTGTGTAGGGTAATCTCGGTAGGGTGAGCTTGTGATGTGTGA
GGCAGGGCATGGTATCAAGCCAAGTGAAGTGCGTCGCGTCGCAACGTTTG
CAGCTTCGCTTCTTCATGCTCTGAGTGCTTTGCTTGTATTGACAGCGCAT
AAGAGCAAAACCAATATTACCGGTACCCCCGCCACGAGAACGACAACGAA
CTTGTTTCTCGTGCAGTGGAGGCGGTAGTGATAAAGCGAAGTCGCAGGAT
CGAGTGCACAAGGAGCGATGGAAGGGGCTAGTGTTGCCTGCCTTCCTCAC
GCACCCAGCAACTTCTTGCGCAAGCCCTTGAGTGATGAACCAGTAAGCAA
CAATTTCCTTATCTACGGGGACTTGTCTATTGTCCCTTACCGGGCAAGAC
GCTGGCCAAAATCATGCTTCTGACAAGGGTCTCTTTCGCAAAGGAGAACC
GGCCCTACTTGTTGTCTGTCTCGTCCCTCCTCATGAACGATGCTCCCGCT
CATCTTCTCCTCCCTTCCGACACACCACAGGTCACGTCTGACCATCTCCA
CGACTATGAGTGCCCCCTCTCCCTCGTCCGCTTCGGGCGTCTACGAGGTG
GAGGCCTCGGACGTCATCAAGCTCATCCTCCAGTTCTGCAAGGAAAATCA
CCTCCTCCACACCCTTCAAACCTTGCAAACCGAGGCCCAAGTTGCCATGA
ATACTGTAGACTCCATGGAAAACTTTCTCGCTGACATTACGCAAGGCCGC
TGGGACACGGTCTTGCCGCAAGTCGCTGGCCTACAGCTTCCTCAGGAAAA
GCTCTCGGCGGTTTATGAGCAGGTCTGCCTGGAGCTCATCGAAATGCGCG
AAAACGACTTAGCTCGTGAGATGCTCCGAACAACCGAGCCTCTTCAAGTC
CTTAAAATTCAAGAACCCGACCGTTACTTTCGCCTCGAGACCTTTTTGAA
TCGCAATATCCACGACGCGCATGAGCTTTATACATACGGTATCAACAAGG
AGCGAAAACGGCAAGAGATTGCTGACAGCCTTGCCGCTGAAGTTTCCGTC
GTCCCTCCCTCCCGTCTTCTCTCCCTCCTACAACAAGCCTTAAAATATCA
GCAATTACAGGGCACTTTGCCCAAGGACAGGCGGTACGACTTGTTCCGCG
GCGGGGCCCGCACGCGGAGCAAAGATGAAATGGAAAAGCCCCCGAAAAAG
CAGATGGGACAGATCAAGTTCGGCTCCAAGACCCACCCGGAATGCGCGCG
CTTTTCGCCCGACGGGCAACATCTAGTAACGGGCTCCCTCGACGGTTTCG
TAGAGGTCTGGGACCCGGACACCTGTCGACTGAGGAAGGAATTGCCGTAC
CAAGCAAGAGAAGAGTTGATGATGCACGATACGGCGGTTTTGTCCTTGAC
ATTTTCGAGGGATGGCGAGATGCTGGCGACGGGGGACACGGAGGGGGTTG
TGAAGATTTGGAAAATCAGCAGTGGGAAGTGCCTGCGGAAGCTAGATCCT
GCCCATGCTAAGGGAATTACCTCCCTTGCGTTCTCGCGCGATTCGCTGCA
GTTGGCCACGGCTTCTTTTGACGGCACTGCGCGCTTGCACGGGATCAAGG
CTGGAAGAGTTTTAAAGGAATTTCGAGGCCATACGTCCTTTGTCAATTGC
GTCTGCTTTACGCAGGACGGCAGCCGGGTCCTCACCGGTAGCAGTGACGG
CACCGTCAAAGTCTGGGACGCGCGCACAAGTGATTGCCTCCATACTTTTA
GACCCGCCATGGAAAAAGTCACTGAAATGGAGGCCATGGTCCACACCGTC
CTCCCGCTTCCAGGCCCCACGGACTTGTTCTTTGTTGCCAATCGCACAGC
GACCGCGTATGTGACCACGGCGCAAGGCCAGGTCGTTAAAAGTATGTCGA
GCGGCAAAAAGGTGGGGGGGATATCACCGCGGCGGCTTTGAGTCCGAAGG
GGACGTATGCGTATTGTGCAGGAGAGGACGGGGTGGTGTACGCCTTTCAT
TTGGGAAGGGGGGATTTGGAGAGCTTTGTGAAGGTAGGGGAGAAGGAGGT
GATTGGAGTGGCGCATCATCCGCATAGGAACGTGGTAGTGACCTTCGGGG
ACGAGGGGGTCTTGAAAGTCTGGAAGGCGTGAGGGGCGTAGACAGGATCC
GAGGAAATGAAAGGACAAAAAAGACGGTGTTGAGCAAATTGATGAATAAT
GATGAAAATGTTTGTGTGAGATTGTGAGACT
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protein sequence of NO07G04020.1

>NO07G04020.1-protein ID=NO07G04020.1-protein|Name=NO07G04020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=484bp
MLPLIFSSLPTHHRSRLTISTTMSAPSPSSASGVYEVEASDVIKLILQFC
KENHLLHTLQTLQTEAQVAMNTVDSMENFLADITQGRWDTVLPQVAGLQL
PQEKLSAVYEQVCLELIEMRENDLAREMLRTTEPLQVLKIQEPDRYFRLE
TFLNRNIHDAHELYTYGINKERKRQEIADSLAAEVSVVPPSRLLSLLQQA
LKYQQLQGTLPKDRRYDLFRGGARTRSKDEMEKPPKKQMGQIKFGSKTHP
ECARFSPDGQHLVTGSLDGFVEVWDPDTCRLRKELPYQAREELMMHDTAV
LSLTFSRDGEMLATGDTEGVVKIWKISSGKCLRKLDPAHAKGITSLAFSR
DSLQLATASFDGTARLHGIKAGRVLKEFRGHTSFVNCVCFTQDGSRVLTG
SSDGTVKVWDARTSDCLHTFRPAMEKVTEMEAMVHTVLPLPGPTDLFFVA
NRTATAYVTTAQGQVVKSMSSGKKVGGISPRRL*
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mRNA from alignment at chr7:1119606..1122428+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G04020.1 ID=NO07G04020.1|Name=NO07G04020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2823bp|location=Sequence derived from alignment at chr7:1119606..1122428+ (Nannochloropsis oceanica)
TGGGGAGGTCGAATGAGAGGGATTGTGGCCGGGTTACAAAGGCGGAGATG
GAGGATTTCGACACACGCCACTACCACGAGTATGACAAGAAGTTTGTACA
GCGTTTATCTGTGTAGGGTAATCTCGGTAGGGTGAGCTTGTGATGTGTGA
GGCAGGGCATGGTATCAAGCCAAGTGAAGTGCGTCGCGTCGCAACGTTTG
CAGCTTCGCTTCTTCATGCTCTGAGTGCTTTGCTTGTATTGACAGCGCAT
AAGAGCAAAACCAATATTACCGGTACCCCCGCCACGAGAACGACAACGAA
CTTGTTTCTCGTGCAGTGGAGGCGGTAGTGATAAAGCGAAGTCGCAGGAT
CGAGTGCACAAGGAGCGATGGAAGGGGCTAGTGTTGCCTGCCTTCCTCAC
GCACCCAGCAACTTCTTGCGCAAGCCCTTGAGTGATGAACCAGTAAGCAA
CAATTTCCTTATCTACGGGGACTTGTCTATTGTCCCTTACCGGGCAAGAC
GCTGGCCAAAATCATGCTTCTGACAAGGGTCTCTTTCGCAAAGGAGAACC
GGCCCTACTTGTTGTCTGTCTCGTCCCTCCTCATGAACGATGCTCCCGCT
CATCTTCTCCTCCCTTCCGACACACCACAGGTCACGTCTGACCATCTCCA
CGACTATGAGTGCCCCCTCTCCCTCGTCCGCTTCGGGCGTCTACGAGGTG
GAGGCCTCGGACGTCATCAAGCTCATCCTCCAGTTCTGCAAGGAAAATCA
CCTCCTCCACACCCTTCAAACCTTGCAAACCGAGGCCCAAGTTGCCATGA
ATACTGTAGACTCCATGGAAAACTTTCTCGCTGACATTACGCAAGGCCGC
TGGGACACGGTCTTGCCGCAAGTCGCTGGCCTACAGCTTCCTCAGGAAAA
GCTCTCGGCGGTTTATGAGCAGGTGAGGGGGGGAGGACGACGGGAGAGGA
GAATTTTTTAGGGGACATCTGACTTAAGTCATTAATTTTTGGACTCTTGA
GACCATCCTCTAACCTGTCTTTTCTTCCTTGTCTTCCTCTCCTCCGACTA
GGTCTGCCTGGAGCTCATCGAAATGCGCGAAAACGACTTAGCTCGTGAGA
TGCTCCGAACAACCGAGCCTCTTCAAGTCCTTAAAATTCAAGAACCCGAC
CGTTACTTTCGCCTCGAGACCTTTTTGAATCGCAATATCCACGACGCGCA
TGAGCTTTATACATACGGTATCAACAAGGAGCGAAAACGGCAAGAGATTG
CTGACAGCCTTGCCGCTGAAGTTTCCGTCGTCCCTCCCTCCCGTCTTCTC
TCCCTCCTACAACAAGCCTTAAAATATCAGCAATTACAGGGCACTTTGCC
CAAGGACAGGCGGTACGACTTGTTCCGCGGCGGGGCCCGCACGCGGAGCA
AAGATGAAATGGAAAAGCCCCCGAAAAAGCAGGTGCGACACACAGACTTC
TTTTAAAATTAAGTTTGAAGATGATACAGTGGAATTATGGACACATTACC
CTTGACAATACAATTGTACACGTACCAACACACGCATTACATTCACTTTG
CTTCAACCCAGATGGGACAGATCAAGTTCGGCTCCAAGACCCACCCGGAA
TGCGCGCGCTTTTCGCCCGACGGGCAACATCTAGTAACGGGCTCCCTCGA
CGGTTTCGTAGAGGTCTGGGACCCGGACACCTGTCGACTGAGGAAGGAAT
TGCCGTACCAAGCAAGAGAAGAGTTGATGATGCACGATACGGCGGTTTTG
TCCTTGACATTTTCGAGGGATGGCGAGATGCTGGCGACGGGGGACACGGA
GGGGGTTGTGAAGGTGCGTAATGGGTTGGGTCTTGGGTCTTAAGTATAAC
ATAACTTGTTCTAACCTCTGTTCCCCCCCGGTATAATTTCAGATTTGGAA
AATCAGCAGTGGGAAGTGCCTGCGGAAGCTAGATCCTGCCCATGCTAAGG
GAATTACCTCCCTTGCGTTCTCGCGCGATTCGCTGCAGTTGGCCACGGCT
TCTTTTGACGGCACTGCGCGCTTGCACGGGATCAAGGCTGGAAGAGTTTT
AAAGGTACAAAAGATTGATGTTGTTGTGTTGGAAAAATCACCGCTATTAT
CCGCCCTGTCCATACTCTCTCTTTTTTCGTACACTCGTCGATTGAGACAT
TGCATTACGCGCTTCCCTCCTTCCCTTTCTCCTCACTTCTTTCCCTCCTT
CTCACTCAGGAATTTCGAGGCCATACGTCCTTTGTCAATTGCGTCTGCTT
TACGCAGGACGGCAGCCGGGTCCTCACCGGTAGCAGTGACGGCACCGTCA
AAGTCTGGGACGCGCGCACAAGTGATTGCCTCCATACTTTTAGACCCGCC
ATGGAAAAAGTCACTGAAATGGAGGCCATGGTCCACACCGTCCTCCCGCT
TCCAGGCCCCACGGACTTGTTCTTTGTTGCCAATCGCACAGCGACCGCGT
ATGTGACCACGGCGCAAGGCCAGGTCGTTAAAAGTATGTCGAGCGGCAAA
AAGGTGGGGGGGATATCACCGCGGCGGCTTTGAGTCCGAAGGGGACGTAT
GCGTATTGTGCAGGAGAGGACGGGGTGGTGTACGCCTTTCATTTGGGAAG
GGGGGATTTGGAGAGCTTTGTGAAGGTAGGGGAGAAGGAGGTGATTGGAG
TGGCGCATCATCCGCATAGGAACGTGGTAGTGACCTTCGGGGACGAGGGG
GTCTTGAAAGTCTGGAAGGCGTGAGGGGCGTAGACAGGATCCGAGGAAAT
GAAAGGACAAAAAAGACGGTGTTGAGCAAATTGATGAATAATGATGAAAA
TGTTTGTGTGAGATTGTGAGACT
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Coding sequence (CDS) from alignment at chr7:1119606..1122428+

>NO07G04020.1 ID=NO07G04020.1|Name=NO07G04020.1|organism=Nannochloropsis oceanica|type=CDS|length=1452bp|location=Sequence derived from alignment at chr7:1119606..1122428+ (Nannochloropsis oceanica)
ATGCTCCCGCTCATCTTCTCCTCCCTTCCGACACACCACAGGTCACGTCT
GACCATCTCCACGACTATGAGTGCCCCCTCTCCCTCGTCCGCTTCGGGCG
TCTACGAGGTGGAGGCCTCGGACGTCATCAAGCTCATCCTCCAGTTCTGC
AAGGAAAATCACCTCCTCCACACCCTTCAAACCTTGCAAACCGAGGCCCA
AGTTGCCATGAATACTGTAGACTCCATGGAAAACTTTCTCGCTGACATTA
CGCAAGGCCGCTGGGACACGGTCTTGCCGCAAGTCGCTGGCCTACAGCTT
CCTCAGGAAAAGCTCTCGGCGGTTTATGAGCAGGTCTGCCTGGAGCTCAT
CGAAATGCGCGAAAACGACTTAGCTCGTGAGATGCTCCGAACAACCGAGC
CTCTTCAAGTCCTTAAAATTCAAGAACCCGACCGTTACTTTCGCCTCGAG
ACCTTTTTGAATCGCAATATCCACGACGCGCATGAGCTTTATACATACGG
TATCAACAAGGAGCGAAAACGGCAAGAGATTGCTGACAGCCTTGCCGCTG
AAGTTTCCGTCGTCCCTCCCTCCCGTCTTCTCTCCCTCCTACAACAAGCC
TTAAAATATCAGCAATTACAGGGCACTTTGCCCAAGGACAGGCGGTACGA
CTTGTTCCGCGGCGGGGCCCGCACGCGGAGCAAAGATGAAATGGAAAAGC
CCCCGAAAAAGCAGATGGGACAGATCAAGTTCGGCTCCAAGACCCACCCG
GAATGCGCGCGCTTTTCGCCCGACGGGCAACATCTAGTAACGGGCTCCCT
CGACGGTTTCGTAGAGGTCTGGGACCCGGACACCTGTCGACTGAGGAAGG
AATTGCCGTACCAAGCAAGAGAAGAGTTGATGATGCACGATACGGCGGTT
TTGTCCTTGACATTTTCGAGGGATGGCGAGATGCTGGCGACGGGGGACAC
GGAGGGGGTTGTGAAGATTTGGAAAATCAGCAGTGGGAAGTGCCTGCGGA
AGCTAGATCCTGCCCATGCTAAGGGAATTACCTCCCTTGCGTTCTCGCGC
GATTCGCTGCAGTTGGCCACGGCTTCTTTTGACGGCACTGCGCGCTTGCA
CGGGATCAAGGCTGGAAGAGTTTTAAAGGAATTTCGAGGCCATACGTCCT
TTGTCAATTGCGTCTGCTTTACGCAGGACGGCAGCCGGGTCCTCACCGGT
AGCAGTGACGGCACCGTCAAAGTCTGGGACGCGCGCACAAGTGATTGCCT
CCATACTTTTAGACCCGCCATGGAAAAAGTCACTGAAATGGAGGCCATGG
TCCACACCGTCCTCCCGCTTCCAGGCCCCACGGACTTGTTCTTTGTTGCC
AATCGCACAGCGACCGCGTATGTGACCACGGCGCAAGGCCAGGTCGTTAA
AAGTATGTCGAGCGGCAAAAAGGTGGGGGGGATATCACCGCGGCGGCTTT
GA
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Synonyms
Publications