NO07G03820.2, NO07G03820.2 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO07G03820.2
Unique Name	NO07G03820.2
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2739
Alignment location	chr7:1068084..1071750 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7	genome	chr7:1068084..1071750 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO07G03820.2 vs.
Match: EWM26977.1 (alanine aminotransferase [Nannochloropsis gaditana])

HSP 1 Score: 635.2 bits (1637), Expect = 1.300e-178
Identity = 317/389 (81.49%), Postives = 344/389 (88.43%), Query Frame = 0

Query:    1 MGAYTNSQGIKTVREEVAAFISARDKTPPPDPDAIFLTNGASEGVRYGLQSLLRSRLGGYNDGVLVPIPQYPLYSALTTLLNGELVPYYLREDDGWTLEAADLRAALSKARGRGVVVRGLVVINPGNPTGQLLTRANMEEIIKLCAEENLVLMADEVYQTNIYVDDREFMSFRKVAVEMGFDPE-GKEGEKEGEVGLQLVSFHSVSKGFMGECGMRGGYFELFGIPATTKAQLYKLASISLCSNTIGQVVTGLMVCPPQEGSPSYSTYEKERSATLASLRRRAQKLTAGLAKLEGVTVQPSTGAMYAFPRLTLPPAFLNEATKAGLKPDMLYCMRLCEATGIVVVPGSGFGQVDGTWHFRTTFLPPEEKMEGVMERLGKFHKEFLDAYR 389
            MGAY+NSQGIKTVREEVAAFI  RD+T  PDPDAIFL NGASEGVRYGLQSLLR RL GY+DGVLVPIPQYPLYSALTTLLNGELVPYYLRE++GWTLE  DL  AL +AR RGV VRGLVVINPGNPTGQLL+RANME+II+ C +ENLVLMADEVYQTNIYVDDR F+SFRKVAV+MG+ P+ G E +   +  LQLVSFHSVSKGFMGECG+RGGY ELFGIP   KAQLYKLASISLCSNTIGQVVTGLMV PP+EGSPS+ TYE ER+ATLASLRRRAQKLTAGL  LEGV+VQPSTGAMY+FPRL+LPPAF  EA K G K D LYC+RL EATGIVVVPGSGFGQVDG+WHFRTTFLPPE+KM+ VMERLGKFHKE LDAYR
Sbjct:  122 MGAYSNSQGIKTVREEVAAFIGKRDQTFSPDPDAIFLINGASEGVRYGLQSLLRPRLAGYHDGVLVPIPQYPLYSALTTLLNGELVPYYLREEEGWTLEVGDLEEALKQARARGVTVRGLVVINPGNPTGQLLSRANMEKIIEFCVQENLVLMADEVYQTNIYVDDRGFLSFRKVAVDMGYPPDAGPEEQGMNKKHLQLVSFHSVSKGFMGECGLRGGYMELFGIPPGVKAQLYKLASISLCSNTIGQVVTGLMVHPPEEGSPSFPTYEGERTATLASLRRRAQKLTAGLGNLEGVSVQPSTGAMYSFPRLSLPPAFHAEAVKQGAKADELYCIRLVEATGIVVVPGSGFGQVDGSWHFRTTFLPPEDKMDSVMERLGKFHKELLDAYR 510

The following BLAST results are available for this feature:

BLAST of NO07G03820.2 vs.

BLAST of NO07G03820.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26977.1	1.300e-178	81.49	alanine aminotransferase [Nannochloropsis gaditana...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO07G03820	NO07G03820	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO07G03820.2	NO07G03820.2-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO07G03820.2.cds1	NO07G03820.2.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G03820.2.cds2	NO07G03820.2.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G03820.2.cds3	NO07G03820.2.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G03820.2.cds4	NO07G03820.2.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr7:1068084..1071750+
coding sequence from alignment at chr7:1068084..1071750+

mRNA sequence

>NO07G03820.2 ID=NO07G03820.2|Name=NO07G03820.2|organism=Nannochloropsis oceanica|type=mRNA|length=2739bp
GCGCATGCTGCAGCTCGCTAAAAGCGACAGACTGATGCGGGACCGGCGGT
GGGTCTGCATGTGCACGTTTTCTCTTACTTCTTGTCCCCGTTCACCACAA
GACCCGACAATCCTCTTCCCCACACATCGCGCTGCAGCTGCAGATATCAT
GAGGGGGTCTTGGTTCGATCGTGTAAGTCGGCGGTAGTTTTCACGCCTCC
CCGGAGACGGCTTTGACCTCCCCCCACGTTTTCGGAAGCCACTCTCACAA
GTGCAACCCCGCTGCTCCTTCTCACGAAAGCACGGACATGGTGGGGCCAT
ACTTCACAGGAGAGTGGACAGCATGTCTTGAACACACTATAATCGTCAAG
GAATCTGGATCGCGCTTATGTCCCCCCCTAAAGCCGTTTTTCACTTCATC
TCTTCCTCTTCCTCTCTCCTTTCCCTTCCCTCCCGCTTTCCAGCTACAGC
ACCCCCAAAATCGAACCACCGACGCGATGGAGCCTTTCCTTAATGCCGTA
GGCCTGCGTCGGCTCCTGCATCGGCCCGCGGGCAAGGCGCCCAAGTGGAG
CGCGGACACGGTGAACCAAGACGTCCTTAATGCCTCGTACGCTGTGCGAG
GCCCCGTCCTGGATCTTGCCAACAAGATGGAGCAACGACTGAAGAGCGGC
GAGGCCTTACCGTTCGACGAGATGGTCTATTGCAATATTGGCAACCCTCA
GTCACTGAAACAGCAGCCCATGACATTCGTCCGTCAAGTCGTGTCCCTTG
TCACCAACCCTCACCTGCTGGAGAACCACAGCGACATTTTCCCCTCCGAT
GCCGTGGCTCGGGCCAGGGTGAGGGAGGGAGGGAGGGAGGGCGTGCACAA
GGGAGAAGAGAAAGTTTTATTTTTACTGCAGTTCTTGTCATTTAATGCCA
ATGAATACGGCAGCCTCTAAGGCGCATCCTAAGCAATCTTCCATTTGACA
AACCTCCATTGCTACCCACACACCTCTAACCTCCCTCATCCTCCTCAGAA
CTACCTGGCCGCCCAGCCAATGGGTGCATACACCAACAGCCAAGGCATCA
AAACGGTCCGCGAGGAAGTCGCCGCCTTCATCTCTGCGCGCGATAAGACC
CCCCCACCTGATCCTGACGCCATCTTTCTCACCAACGGCGCCAGCGAGGG
GGTGCGGTATGGCCTGCAGTCACTCCTGCGCTCCCGCCTTGGGGGTTACA
ATGATGGAGTCCTCGTGCCCATCCCACAATACCCCCTCTACTCAGCCCTC
ACCACTCTCCTGAACGGCGAGCTGGTCCCATACTATCTCCGCGAAGACGA
CGGTTGGACGCTCGAAGCCGCGGATTTACGCGCCGCCCTTTCCAAGGCAC
GGGGTAGGGGGGTAGTGGTCCGAGGCCTGGTGGTAATCAATCCGGGCAAT
CCCACCGGGCAGCTCTTGACAAGGGCGAACATGGAAGAGATCATTAAGTT
GTGTGCAGAGGAGAATCTTGTGTTGATGGCCGACGAGGTGTATCAGACTA
ATATCTACGTGGACGACAGGGAGTTTATGTCTTTTAGGAAGGTGGCGGTG
GAGATGGGCTTTGACCCCGAGGGGAAGGAGGGGGAAAAGGAGGGGGAGGT
AGGGTTGCAGCTGGTGTCGTTTCATTCCGTGAGCAAAGGGTTCATGGGCG
AATGCGGAATGCGCGGAGGCTATTTCGAGCTGTTTGGGATTCCGGCCACC
ACCAAGGCCCAGCTCTACAAGCTCGCGTCCATCTCCCTCTGCAGCAACAC
CATCGGCCAAGTCGTTACCGGGCTGATGGTCTGCCCTCCCCAAGAGGGCT
CCCCCTCCTACTCTACCTACGAGAAAGAACGCTCTGCCACTCTCGCCTCC
CTCCGTAGACGTGCTCAGAAACTAACGGCTGGATTGGCCAAACTAGAGGG
TGTAACGGTTCAGCCTTCCACAGGTGCCATGTACGCGTTCCCACGTCTCA
CCCTTCCTCCTGCATTTTTGAACGAGGCGACAAAGGCAGGATTAAAGCCC
GATATGCTATATTGCATGCGTCTATGCGAGGCCACAGGCATCGTGGTGGT
GCCGGGATCAGGGTTCGGTCAGGTCGATGGCACGTGGCACTTCCGCACAA
CTTTCCTCCCTCCGGAAGAGAAGATGGAGGGGGTTATGGAACGACTGGGC
AAGTTTCACAAAGAGTTTCTGGATGCGTACCGTGAATAAAGGGCGGGAGA
AGACCGGAAAGAAGAGAGATGGAGGAGATTGGGTTGTATGAAACATACCA
AAGGTGAATTCCTGTCGTGTCGGTTGGTGCGGTGGTGCGTGTGTGTTGGT
GTATGGGTGAGTGGGGAGGATGTGTGTGAGGGATGGGGCGGCGGAGTGTG
AGCAAGGCGGTATTGTTTGACTGGAGCGCGCAAGCTGGCTGAAGGGGAGA
AGGAAGGGGTGAGAAAGAGGAATAGGAGGTCGAAGGGAGCCGGGAGGAGA
GGTTGTGTATGTTGTTGGTTGGTTACATTTTGTGTGATGGAGAACGGTAC
GATTGATAGAGAGGATAGATCGAAATGTACGTACATTGTTTCTGTAAGAA
TGCTGTAGGGCCGATGAGCGTTGTTCTGCGTTTGAAAACGCGTGTTGTCG
GGTGTGTCGGTCGTCGGGGTGGTGAATGTGGATTTAGTGTGCGAAATGTG
TTGTGGATACAAGGGTGGACGTGTCCAGCCGACAAACAGGGGAAAGTCGT
AGGATATATTCCGGAAGAAGTAAAGGAAAGAAAAGTCAT

protein sequence of NO07G03820.2

>NO07G03820.2-protein ID=NO07G03820.2-protein|Name=NO07G03820.2|organism=Nannochloropsis oceanica|type=polypeptide|length=390bp
MGAYTNSQGIKTVREEVAAFISARDKTPPPDPDAIFLTNGASEGVRYGLQ
SLLRSRLGGYNDGVLVPIPQYPLYSALTTLLNGELVPYYLREDDGWTLEA
ADLRAALSKARGRGVVVRGLVVINPGNPTGQLLTRANMEEIIKLCAEENL
VLMADEVYQTNIYVDDREFMSFRKVAVEMGFDPEGKEGEKEGEVGLQLVS
FHSVSKGFMGECGMRGGYFELFGIPATTKAQLYKLASISLCSNTIGQVVT
GLMVCPPQEGSPSYSTYEKERSATLASLRRRAQKLTAGLAKLEGVTVQPS
TGAMYAFPRLTLPPAFLNEATKAGLKPDMLYCMRLCEATGIVVVPGSGFG
QVDGTWHFRTTFLPPEEKMEGVMERLGKFHKEFLDAYRE*

mRNA from alignment at chr7:1068084..1071750+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO07G03820.2 ID=NO07G03820.2|Name=NO07G03820.2|organism=Nannochloropsis oceanica|type=mRNA|length=3667bp|location=Sequence derived from alignment at chr7:1068084..1071750+ (Nannochloropsis oceanica)
GCGCATGCTGCAGCTCGCTAAAAGCGACAGACTGATGCGGGACCGGCGGT
GGGTCTGCATGTGCACGTTTTCTCTTACTTCTTGTCCCCGTTCACCACAA
GACCCGACAATCCTCTTCCCCACACATCGCGCTGCAGCTGCAGATATCAT
GAGGGGGTCTTGGTTCGATCGTGTAAGTCGGCGGTAGTTTTCACGCCTCC
CCGGAGACGGCTTTGACCTCCCCCCACGTTTTCGGAAGCCACTCTCACAA
GTGCAACCCCGCTGCTCCTTCTCACGAAAGCACGGACATGGTGGGGCCAT
ACTTCACAGGAGAGTGGACAGCATGTCTTGAACACACTATAATCGTCAAG
GAATCTGGATCGCGCTTATGTCCCCCCCTAAAGCCGTTTTTCACTTCATC
TCTTCCTCTTCCTCTCTCCTTTCCCTTCCCTCCCGCTTTCCAGCTACAGC
ACCCCCAAAATCGAACCACCGACGCGATGGAGCCTTTCCTTAATGCCGTA
GGCCTGCGTCGGCTCCTGCATCGGCCCGCGGGCAAGGCGCCCAAGTGGAG
CGCGGACACGGTGAACCAAGACGTCCTTAATGCCTCGTACGCTGTGCGAG
GCCCCGTCCTGGATCTTGCCAACAAGATGGAGCAACGACTGAAGAGCGGC
GAGGCCTTACCGTTCGACGAGATGGTCTATTGCAATATTGGTACGGGCAC
CAAGCTTTGAGTATGTGGGAACGGGGTGTGTGTATGTGTGTGTATGTATG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGGGAGGCAGAGAGAG
AGAGAGAGAGGGAGAGAGGGAGAGGGAGGGAGAGAGAGAGAGACTAGAAA
CACGACGGGTTCGGACATGTGCCGCCGCCCGCTCCTTGTGTCGTAGGCTT
TGTTTATGATTCCACGCCATCGCTCACATCGGGACTCAGATACATGGGAG
GGCTTGGGAGACGTTTCTTCACAAGCACGAGACAGTGTCACTATTTGCTT
TCAATTTCTGCCTCCTCCTCCTCCTCCTCTTACCTCTCTCCCCTTCCCCT
TCCTAGGCAACCCTCAGTCACTGAAACAGCAGCCCATGACATTCGTCCGT
CAAGTCGTGTCCCTTGTCACCAACCCTCACCTGCTGGAGAACCACAGCGA
CATTTTCCCCTCCGATGCCGTGGCTCGGGCCAGGGTGAGGGAGGGAGGGA
GGGAGGGCGTGCACAAGGGAGAAGAGAAAGTTTTATTTTTACTGCAGTTC
TTGTCATTTAATGCCAATGAATACGGCAGCCTCTAAGGCGCATCCTAAGC
AATCTTCCATTTGACAAACCTCCATTGCTACCCACACACCTCTAACCTCC
CTCATCCTCCTCAGAACTACCTGGCCGCCCAGCCAATGGGTGCATACACC
AACAGCCAAGGCATCAAAACGGTCCGCGAGGAAGTCGCCGCCTTCATCTC
TGCGCGCGATAAGACCCCCCCACCTGATCCTGACGCCATCTTTCTCACCA
ACGGCGCCAGCGAGGGGGTGCGGTATGGCCTGCAGTCACTCCTGCGCTCC
CGCCTTGGGGGTTACAATGATGGAGTCCTCGTGCCCATCCCACAATACCC
CCTCTACTCAGCCCTCACCACTCTCCTGAACGGCGAGCTGGTCCCATACT
ATCTCCGCGAAGACGACGGTTGGACGCTCGAAGCCGCGGATTTACGCGCC
GCCCTTTCCAAGGCACGGGGTAGGGGGGTAGTGGTCCGAGGCCTGGTGGT
AATCAATCCGGGCAATCCCACCGGGCAGCTCTTGACAAGGGCGAACATGG
AAGAGATCATTAAGTTGTGTGCAGAGGAGAATCTTGTGTTGATGGCCGAC
GAGGTGTATCAGACTAATATCTACGTGGACGACAGGGAGTTTATGTCTTT
TAGGAAGGTGGCGGTGGAGATGGGCTTTGACCCCGAGGGGAAGGAGGGGG
AAAAGGAGGGGGAGGTAGGGTTGCAGCTGGTGTCGTTTCATTCCGTGAGC
AAAGGGTTCATGGGCGAATGCGGAATGCGCGGAGGTAGGGATTAAAGGGA
GGAAGGGAGGGAGGTGGGGAAGGAGGGAGGGGGGAGGGAGGGGGGGAGGG
AGGGGGGAGGGAGGGAGGGTTGATGGACGGCATGTCCTCACTTTATACCG
TCGCAGCTCTCCTTGCTCTCACCCTCCCTCGTTCCTTCCCTCCCCCCTGT
ACTCCCTTCCTGCCCCCCTCCCACAGGCTATTTCGAGCTGTTTGGGATTC
CGGCCACCACCAAGGCCCAGCTCTACAAGCTCGCGTCCATCTCCCTCTGC
AGCAACACCATCGGCCAAGTCGGTAGGTAGGCGGGACGGAGGGAAGGAGG
GACAGAGGGACGGACGGAGAGGCAGGCTGAAAAAAGGGTGGAAGAATGAG
GGGACGTTGACACAGGAATCGATGGCTGCTGTTAATTATATCTCCGTCGT
CACAATCACTCATTGTGCCCATCCCAACCCCCTCCCCTCCTTCCCCTTCC
GCCCCCATAACTCACACCCTCTTTTTCATCATTAGTTACCGGGCTGATGG
TCTGCCCTCCCCAAGAGGGCTCCCCCTCCTACTCTACCTACGAGAAAGAA
CGCTCTGCCACTCTCGCCTCCCTCCGTAGACGTGCTCAGAAACTAACGGC
TGGATTGGCCAAACTAGAGGGTGTAACGGTTCAGCCTTCCACAGGTGCCA
TGTACGCGTTCCCACGTCTCACCCTTCCTCCTGCATTTTTGAACGAGGCG
ACAAAGGCAGGATTAAAGCCCGATATGCTATATTGCATGCGTCTATGCGA
GGCCACAGGCATCGTGGTGGTGCCGGGATCAGGGTTCGGTCAGGTAGGGG
GATGGGGAGGGAGGGAGGAAGGGAGGAAGGGAGGCGGCTGGTAGGCAGAT
AGAGCTTACGGCGTGGCGGTGCGCAGGCGGTGAGGATTAATATTTATCTC
TTTCATTCCCCCTCCTCCTCCCCTTCCTCCCTCCTCTCCCTCGCACGCAG
GTCGATGGCACGTGGCACTTCCGCACAACTTTCCTCCCTCCGGAAGAGAA
GATGGAGGGGGTTATGGAACGACTGGGCAAGTTTCACAAAGAGTTTCTGG
ATGCGTACCGTGAATAAAGGGCGGGAGAAGACCGGAAAGAAGAGAGATGG
AGGAGATTGGGTTGTATGAAACATACCAAAGGTGAATTCCTGTCGTGTCG
GTTGGTGCGGTGGTGCGTGTGTGTTGGTGTATGGGTGAGTGGGGAGGATG
TGTGTGAGGGATGGGGCGGCGGAGTGTGAGCAAGGCGGTATTGTTTGACT
GGAGCGCGCAAGCTGGCTGAAGGGGAGAAGGAAGGGGTGAGAAAGAGGAA
TAGGAGGTCGAAGGGAGCCGGGAGGAGAGGTTGTGTATGTTGTTGGTTGG
TTACATTTTGTGTGATGGAGAACGGTACGATTGATAGAGAGGATAGATCG
AAATGTACGTACATTGTTTCTGTAAGAATGCTGTAGGGCCGATGAGCGTT
GTTCTGCGTTTGAAAACGCGTGTTGTCGGGTGTGTCGGTCGTCGGGGTGG
TGAATGTGGATTTAGTGTGCGAAATGTGTTGTGGATACAAGGGTGGACGT
GTCCAGCCGACAAACAGGGGAAAGTCGTAGGATATATTCCGGAAGAAGTA
AAGGAAAGAAAAGTCAT

Coding sequence (CDS) from alignment at chr7:1068084..1071750+

>NO07G03820.2 ID=NO07G03820.2|Name=NO07G03820.2|organism=Nannochloropsis oceanica|type=CDS|length=1170bp|location=Sequence derived from alignment at chr7:1068084..1071750+ (Nannochloropsis oceanica)
ATGGGTGCATACACCAACAGCCAAGGCATCAAAACGGTCCGCGAGGAAGT
CGCCGCCTTCATCTCTGCGCGCGATAAGACCCCCCCACCTGATCCTGACG
CCATCTTTCTCACCAACGGCGCCAGCGAGGGGGTGCGGTATGGCCTGCAG
TCACTCCTGCGCTCCCGCCTTGGGGGTTACAATGATGGAGTCCTCGTGCC
CATCCCACAATACCCCCTCTACTCAGCCCTCACCACTCTCCTGAACGGCG
AGCTGGTCCCATACTATCTCCGCGAAGACGACGGTTGGACGCTCGAAGCC
GCGGATTTACGCGCCGCCCTTTCCAAGGCACGGGGTAGGGGGGTAGTGGT
CCGAGGCCTGGTGGTAATCAATCCGGGCAATCCCACCGGGCAGCTCTTGA
CAAGGGCGAACATGGAAGAGATCATTAAGTTGTGTGCAGAGGAGAATCTT
GTGTTGATGGCCGACGAGGTGTATCAGACTAATATCTACGTGGACGACAG
GGAGTTTATGTCTTTTAGGAAGGTGGCGGTGGAGATGGGCTTTGACCCCG
AGGGGAAGGAGGGGGAAAAGGAGGGGGAGGTAGGGTTGCAGCTGGTGTCG
TTTCATTCCGTGAGCAAAGGGTTCATGGGCGAATGCGGAATGCGCGGAGG
CTATTTCGAGCTGTTTGGGATTCCGGCCACCACCAAGGCCCAGCTCTACA
AGCTCGCGTCCATCTCCCTCTGCAGCAACACCATCGGCCAAGTCGTTACC
GGGCTGATGGTCTGCCCTCCCCAAGAGGGCTCCCCCTCCTACTCTACCTA
CGAGAAAGAACGCTCTGCCACTCTCGCCTCCCTCCGTAGACGTGCTCAGA
AACTAACGGCTGGATTGGCCAAACTAGAGGGTGTAACGGTTCAGCCTTCC
ACAGGTGCCATGTACGCGTTCCCACGTCTCACCCTTCCTCCTGCATTTTT
GAACGAGGCGACAAAGGCAGGATTAAAGCCCGATATGCTATATTGCATGC
GTCTATGCGAGGCCACAGGCATCGTGGTGGTGCCGGGATCAGGGTTCGGT
CAGGTCGATGGCACGTGGCACTTCCGCACAACTTTCCTCCCTCCGGAAGA
GAAGATGGAGGGGGTTATGGAACGACTGGGCAAGTTTCACAAAGAGTTTC
TGGATGCGTACCGTGAATAA

Synonyms

Publications