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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| chr7 | genome | chr7:1061142..1064003 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G03790.1 vs.
Match: EWM26989.1 (magnesium and cobalt transport protein [Nannochloropsis gaditana]) HSP 1 Score: 706.8 bits (1823), Expect = 7.100e-200 Identity = 405/732 (55.33%), Postives = 483/732 (65.98%), Query Frame = 0
Query: 1 MTTLDDPSH--LDKTLWDVPDDAAAPTTPPLLARFSTVHSAAALAWEERLWKEVPQALWDKIVMRDGVPGLCDSKAISKALNKALYDPRIHKYVDSTDDGLRRFFDVLDTNLDNNLQKEELYEAFRRILNDFGVWNGGRAEFRAYWEATWAQILDVLAGMV-----LVAPQGESEEQVEMGPFCFEAFAVLLRRLKLELALRVWEKDGSLETMPSAVQKSMVKIDIKGRIDGNKRFASETEVNHRKYRGAGTRTSHITPAAATTEWARRLSSLMQLEEEEVVFKTYTWNARTVMCLDVSRRHMRDFFLCHRGPEWTMRWVIADSSDRANIIRLSIKYRFHPLHLEDVLNMERQQPRFLKYGGHYFVILPLLRLIPESVKEEGGKEGAPTGADSTTVCDGGGVFGKGSR-----TCGLENIAIEKSRIAIFASGPPHFDTIISIHGAWWRVRNRCC-VHPPSSSSSSRASTAAAAFAAASSSYNHHLKKRKASSEIQSVGEGIHDTFLTPSVAPRSGPGKQGSPLTSIRFDSEDHIIVPAIEEPLAAECSPSGAPTSVLEEAARLLHEDYSNVRHGNSNWMLHAMVETTTKMLVPIVAAYDRRLRLFRDELDGPDAVRMRERLSKPIMDVKHDLIWLQKKVKSMKPVLRSLIGCPKLAGDGGGEVVFYLQGVDDDLEILSDDINTMLVLAQGLLDESKYLKDDTRNEALKLFAVMTATFCPLQFLTGYFGTNF 720
M+ LD S L++ L D D + + PP A + + WEERLW+E+PQ LWDK+VMR+GVPGL DS+AI K L +ALYDPRIHK+VD T DGLRRFF+ L T+ D+ L EL EAF+R L DFGVW G R EFR YW+ TWA++L VL ++ + GE+ Q + FCF AFA LLRRLKLELALRVWEK M A ++S+V+IDI D KR + + G G I P A +W RRLS+L LEEEEVV KTY WNAR V LDV+RR+MRDFFL HR PEW +RWVIAD SDRANIIRLSIKY FHPLHLEDVL +ERQQPRFLKYGGHYF+ILPLLRL+ ++ + +G T A T++ D G K R + +IA+E SR+AIFA+GPPHFDTII+IHGAW RVRNRCC + PP+ + S A S+ H+TF TPS+ P PG S + R + H + P P P PTSVL A RLLHEDYS+VRHGNSNWMLH ++ET TKM++PI+A Y+ RL F+ +L+GPDA RMRERLSKPIMDVKHDLI LQ+++KSM PVLR LI P L D E +FY+QGV DDL +L DDINTMLVLAQ LLDESKYLKDDTRNEALKLFAV+TA FCPLQFL GYFGTNF
Sbjct: 1 MSDLDQYSREMLEQALLDSLQDGSPVSPPPDPAPKQSDSDEDGVEWEERLWRELPQELWDKVVMRNGVPGLHDSRAICKTLIEALYDPRIHKHVDVTKDGLRRFFEALTTHSDHVLHSHELQEAFQRTLKDFGVWEGERPEFRQYWKKTWAEMLLVLTRVMHGDKSSGSAGGEARRQGDT--FCFGAFAGLLRRLKLELALRVWEKSMGPRVMSLASRRSIVEIDI----DEGKRGRGGSG----EQEGNGQEIPEI-PGMADVKWPRRLSALYNLEEEEVVLKTYVWNARRVRGLDVTRRNMRDFFLGHRDPEWRVRWVIADWSDRANIIRLSIKYCFHPLHLEDVLKLERQQPRFLKYGGHYFLILPLLRLVRDAAEAKGEHS---TRATPTSLPDHGDTPKKEDRWKVAASQDFADIALETSRLAIFAAGPPHFDTIITIHGAWQRVRNRCCSLEPPTPNESVPGKRNVFERMTAPVPIETGACAAIPMEAAPSLA-WTHETFSTPSIPPL--PGDLSS---APRSGDKPHALNPEGSTP------PPMGPTSVLGAAFRLLHEDYSSVRHGNSNWMLHTILETITKMIIPIMALYETRLLAFQRDLNGPDAPRMRERLSKPIMDVKHDLISLQQRIKSMLPVLRGLISEPSLRED---EALFYIQGVHDDLHVLYDDINTMLVLAQSLLDESKYLKDDTRNEALKLFAVVTALFCPLQFLAGYFGTNF 703
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G03790.1 ID=NO07G03790.1|Name=NO07G03790.1|organism=Nannochloropsis oceanica|type=mRNA|length=2424bp AACAGGAAACATGACCACACTGGACGATCCGTCGCACCTGGATAAGACGC TGTGGGATGTTCCCGACGATGCCGCGGCACCCACCACGCCCCCCCTTCTA GCGAGATTCTCCACTGTCCACTCTGCAGCCGCCTTAGCTTGGGAAGAAAG ACTATGGAAAGAGGTCCCGCAGGCATTGTGGGACAAAATCGTCATGCGAG ATGGTGTGCCGGGGCTTTGTGACAGCAAGGCGATTTCCAAGGCCTTGAAC AAGGCCTTGTACGACCCCCGAATCCACAAGTACGTGGATTCCACTGACGA CGGCCTGCGGCGATTCTTCGACGTCCTTGATACCAATCTTGATAACAACC TACAGAAAGAGGAGCTTTACGAGGCCTTTCGACGTATCCTGAACGATTTT GGTGTCTGGAACGGTGGTCGTGCTGAATTTCGGGCCTATTGGGAAGCAAC ATGGGCCCAGATTTTGGATGTTTTGGCAGGAATGGTGCTCGTGGCACCTC AAGGAGAATCGGAGGAGCAGGTAGAGATGGGACCATTTTGTTTCGAGGCC TTTGCTGTGCTCTTGCGTCGGTTGAAGTTGGAGCTGGCCTTGCGTGTGTG GGAGAAGGATGGCAGCCTGGAGACGATGCCTTCGGCGGTACAGAAGTCCA TGGTGAAGATCGACATAAAGGGGAGAATAGATGGGAATAAACGATTTGCG AGTGAGACTGAGGTAAATCATCGCAAGTATCGCGGTGCTGGCACCCGCAC AAGTCACATAACGCCAGCAGCTGCTACGACAGAGTGGGCAAGAAGGCTAA GTTCGCTGATGCAGTTGGAGGAGGAAGAGGTGGTATTCAAAACGTACACA TGGAATGCCCGGACGGTGATGTGTTTGGATGTAAGCCGGCGTCATATGCG AGACTTTTTCTTGTGTCACCGCGGTCCAGAATGGACGATGCGATGGGTAA TTGCCGATTCGTCGGACCGTGCAAATATTATTCGGCTGAGTATTAAGTAT CGATTCCATCCTTTGCATTTGGAAGATGTGCTCAACATGGAACGGCAGCA GCCACGATTTCTCAAGTATGGAGGGCATTACTTTGTGATTCTACCCTTGC TGCGTCTCATTCCGGAGAGCGTGAAGGAGGAAGGGGGAAAAGAGGGGGCC CCGACAGGAGCAGACTCAACGACCGTTTGTGACGGCGGTGGTGTGTTTGG TAAGGGTTCTCGCACATGCGGGCTTGAGAACATTGCGATTGAGAAATCTC GAATAGCTATCTTTGCCTCGGGCCCGCCCCATTTCGATACCATCATTAGT ATCCACGGCGCGTGGTGGCGGGTCCGTAATCGGTGCTGTGTTCATCCTCC TTCGAGTAGCAGCAGTAGTCGGGCCAGCACCGCTGCTGCTGCTTTTGCTG CTGCTTCCTCCTCTTACAACCACCATCTGAAGAAACGAAAAGCTTCCTCG GAAATCCAATCAGTCGGCGAGGGGATACACGACACATTCCTCACCCCCTC TGTTGCGCCCCGATCAGGACCAGGAAAACAAGGGTCGCCATTGACTTCGA TCCGATTCGACTCGGAGGACCATATCATTGTTCCGGCAATAGAGGAACCT CTGGCTGCTGAATGCAGCCCTTCGGGAGCCCCGACGAGTGTCTTGGAAGA GGCTGCTCGCTTGCTGCACGAGGACTATAGCAACGTCAGACATGGGAACT CGAATTGGATGCTGCATGCCATGGTAGAGACTACGACCAAGATGCTTGTG CCTATAGTCGCGGCGTATGACAGAAGACTAAGGCTGTTTCGAGATGAGTT GGATGGTCCGGATGCAGTGAGGATGAGGGAGCGTTTGAGTAAGCCCATTA TGGATGTGAAGCACGATTTAATTTGGTTGCAGAAGAAGGTGAAAAGCATG AAGCCCGTGCTGAGGAGCTTGATTGGCTGCCCCAAATTGGCAGGGGATGG AGGGGGGGAGGTGGTGTTCTATCTGCAGGGGGTTGACGATGACTTAGAGA TTTTGTCTGATGATATCAATACGATGCTGGTGCTGGCACAGGGGTTGTTG GATGAGAGCAAATATTTGAAGGATGACACAAGAAACGAGGCATTAAAACT CTTTGCCGTCATGACTGCCACCTTCTGTCCTTTGCAGTTCCTAACGGGAT ATTTTGGCACGAACTTCTGGGACATTGACACCGACCGCTCGAGCGTCCCC CTCATGAATGATCCCAATGGCCCCCTCTTTTTTTGGTTGATGTGCTGGCT GCTGGCTTCGGGCTTCCTGGCGTATGTACGCTTCAGTCGTGAGTGGATAT AGAGTGAGTGGAAGGGAAGAGACGAAGGGTATGGGAGGGAAGCAAAAGAT GTAGTATAGCATGGGTGGGTTTCCTTCCGTAAATAGAAGCAGCCAAGAAA TGAAACACATGGCAAGTAAATCAC back to topprotein sequence of NO07G03790.1 >NO07G03790.1-protein ID=NO07G03790.1-protein|Name=NO07G03790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=764bp MTTLDDPSHLDKTLWDVPDDAAAPTTPPLLARFSTVHSAAALAWEERLWK EVPQALWDKIVMRDGVPGLCDSKAISKALNKALYDPRIHKYVDSTDDGLR RFFDVLDTNLDNNLQKEELYEAFRRILNDFGVWNGGRAEFRAYWEATWAQ ILDVLAGMVLVAPQGESEEQVEMGPFCFEAFAVLLRRLKLELALRVWEKD GSLETMPSAVQKSMVKIDIKGRIDGNKRFASETEVNHRKYRGAGTRTSHI TPAAATTEWARRLSSLMQLEEEEVVFKTYTWNARTVMCLDVSRRHMRDFF LCHRGPEWTMRWVIADSSDRANIIRLSIKYRFHPLHLEDVLNMERQQPRF LKYGGHYFVILPLLRLIPESVKEEGGKEGAPTGADSTTVCDGGGVFGKGS RTCGLENIAIEKSRIAIFASGPPHFDTIISIHGAWWRVRNRCCVHPPSSS SSSRASTAAAAFAAASSSYNHHLKKRKASSEIQSVGEGIHDTFLTPSVAP RSGPGKQGSPLTSIRFDSEDHIIVPAIEEPLAAECSPSGAPTSVLEEAAR LLHEDYSNVRHGNSNWMLHAMVETTTKMLVPIVAAYDRRLRLFRDELDGP DAVRMRERLSKPIMDVKHDLIWLQKKVKSMKPVLRSLIGCPKLAGDGGGE VVFYLQGVDDDLEILSDDINTMLVLAQGLLDESKYLKDDTRNEALKLFAV MTATFCPLQFLTGYFGTNFWDIDTDRSSVPLMNDPNGPLFFWLMCWLLAS GFLAYVRFSREWI* back to topmRNA from alignment at chr7:1061142..1064003+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G03790.1 ID=NO07G03790.1|Name=NO07G03790.1|organism=Nannochloropsis oceanica|type=mRNA|length=2862bp|location=Sequence derived from alignment at chr7:1061142..1064003+ (Nannochloropsis oceanica) AACAGGAAACATGACCACACTGGACGATCCGTCGCACCTGGATAAGACGC
TGTGGGATGTTCCCGACGATGCCGCGGCACCCACCACGCCCCCCCTTCTA
GCGAGATTCTCCACTGTCCACTCTGCAGCCGCCTTAGCTTGGGAAGAAAG
ACTATGGAAAGAGGTCCCGCAGGCATTGTGGGACAAAATCGTCATGCGAG
ATGGTGTGCCGGGGCTTTGTGACAGCAAGGCGATTTCCAAGGCCTTGAAC
AAGGCCTTGTACGACCCCCGAATCCACAAGGTATGCATTTTGTTGAGTGG
TATGTGCGATTGTGGATACAATCAAGAGCCGATAAGCATCTTGCCTTTCC
CACCTTTCTTCCTTCGTACACCATGCATCTTATGCACAACTTCTTCCACA
TTCTCCCCCTCCCTCATAGTACGTGGATTCCACTGACGACGGCCTGCGGC
GATTCTTCGACGTCCTTGATACCAATCTTGATAACAACCTACAGAAAGAG
GAGCTTTACGAGGCCTTTCGACGTATCCTGAACGATTTTGGTGTCTGGAA
CGGTGGTCGTGCTGAATTTCGGGCCTATTGGGAAGCAACATGGGCCCAGA
TTTTGGATGTTTTGGCAGGAATGGTGCTCGTGGCACCTCAAGGAGAATCG
GAGGAGCAGGTAGAGATGGGACCATTTTGTTTCGAGGCCTTTGCTGTGCT
CTTGCGTCGGTTGAAGTTGGAGCTGGCCTTGCGTGTGTGGGAGAAGGATG
GCAGCCTGGAGACGATGCCTTCGGCGGTACAGAAGTCCATGGTGAAGATC
GACATAAAGGGGAGAATAGATGGGAATAAACGATTTGCGAGTGAGACTGA
GGTAAATCATCGCAAGTATCGCGGTGCTGGCACCCGCACAAGTCACATAA
CGCCAGCAGCTGCTACGACAGAGTGGGCAAGAAGGCTAAGTTCGCTGATG
CAGTTGGAGGAGGAAGAGGTGGTATTCAAAACGTACACATGGAATGCCCG
GACGGTGATGTGTTTGGATGTAAGCCGGCGTCATATGCGAGACTTTTTCT
TGTGTCACCGCGGTCCAGAATGGACGATGCGATGGGTAATTGCCGATTCG
TCGGACCGTGCAAATATTATTCGGCTGAGTATTAAGTATCGATTCCATCC
TTTGCATTTGGAAGATGTGCTCAACATGGAACGGCAGCAGCCACGATTTC
TCAAGTATGGAGGGCATTACTTTGTGATTCTACCCTTGCTGCGTCTCATT
CCGGAGAGCGTGAAGGAGGAAGGGGGAAAAGAGGGGGCCCCGACAGGAGC
AGACTCAACGACCGTTTGTGACGGCGGTGGTGTGTTTGGTAAGGGTTCTC
GCACATGCGGGCTTGAGAACATTGCGATTGAGAAATCTCGAATAGCTATC
TTTGCCTCGGGCCCGCCCCATTTCGATACCATCATTAGTATCCACGGCGC
GTGGTGGCGGGTCCGTAATCGGTGCTGTGTTCATCCTCCTTCGAGTAGCA
GCAGTAGTCGGGCCAGCACCGCTGCTGCTGCTTTTGCTGCTGCTTCCTCC
TCTTACAACCACCATCTGAAGAAACGAAAAGCTTCCTCGGAAATCCAATC
AGTCGGCGAGGGGATACACGACACATTCCTCACCCCCTCTGTTGCGCCCC
GATCAGGACCAGGAAAACAAGGGTCGCCATTGACTTCGATCCGATTCGAC
TCGGAGGACCATATCATTGTTCCGGCAATAGAGGAACCTCTGGCTGCTGA
ATGCAGCCCTTCGGGAGCCCCGACGAGTGTCTTGGAAGAGGCTGCTCGCT
TGCTGCACGAGGACTATAGCAACGTCAGACATGGGAACTCGAATTGGATG
CTGCATGCCATGGTAGAGACTACGACCAAGATGCTTGTGCCTATAGTCGC
GGCGTATGACAGAAGACTAAGGCTGTTTCGAGATGAGTTGGATGGTCCGG
ATGCAGTGAGGATGAGGGAGCGTTTGAGTAAGCCCATTATGGATGTGAAG
CACGATTTAATTTGGTTGCAGAAGAAGGTGAAAAGCATGAAGCCCGTGCT
GAGGAGCTTGATTGGCTGCCCCAAATTGGCAGGGGATGGAGGGGGGGAGG
TGGTGTTCTATCTGCAGGGGGTTGACGATGACTTAGAGATTTTGTCTGAT
GATATCAATACGATGCTGGTGCTGGCACAGGGGTTGTTGGATGAGAGCAA
ATATTTGAAGGATGACACAAGGTACGTGCGTCCTTTCTTCTGGCCAAATT
GACTCAACACTTCCTCCCTCCCACCTTCCCCTCCCCCCGTATGTATAAAA
ATCACGATTAACCATGCTCAACTTCCTTTTCTTTTTTTTTCTTGTCCACT
CCACAGAAACGAGGCATTAAAACTCTTTGCCGTCATGACTGCCACCTTCT
GTCCTTTGCAGTTCCTAACGGGATATTTTGGCACGAACTTCTGGGGTACG
TACGTATGGGAGGAGACGGAGGAGGCGGTTTCAATATCAGTTGTGTCTCA
CTTTATCTGAAACGTTTCATTCCAAAACTGATCTCCACTAAGTTGCTCTT
TAACTTCTTTCCTCCTTCCCCCTCCTGCTCTCCCTCCTACTGTGTCACCA
TCACCAAAGACATTGACACCGACCGCTCGAGCGTCCCCCTCATGAATGAT
CCCAATGGCCCCCTCTTTTTTTGGTTGATGTGCTGGCTGCTGGCTTCGGG
CTTCCTGGCGTATGTACGCTTCAGTCGTGAGTGGATATAGAGTGAGTGGA
AGGGAAGAGACGAAGGGTATGGGAGGGAAGCAAAAGATGTAGTATAGCAT
GGGTGGGTTTCCTTCCGTAAATAGAAGCAGCCAAGAAATGAAACACATGG
CAAGTAAATCAC back to topCoding sequence (CDS) from alignment at chr7:1061142..1064003+ >NO07G03790.1 ID=NO07G03790.1|Name=NO07G03790.1|organism=Nannochloropsis oceanica|type=CDS|length=2292bp|location=Sequence derived from alignment at chr7:1061142..1064003+ (Nannochloropsis oceanica) ATGACCACACTGGACGATCCGTCGCACCTGGATAAGACGCTGTGGGATGT TCCCGACGATGCCGCGGCACCCACCACGCCCCCCCTTCTAGCGAGATTCT CCACTGTCCACTCTGCAGCCGCCTTAGCTTGGGAAGAAAGACTATGGAAA GAGGTCCCGCAGGCATTGTGGGACAAAATCGTCATGCGAGATGGTGTGCC GGGGCTTTGTGACAGCAAGGCGATTTCCAAGGCCTTGAACAAGGCCTTGT ACGACCCCCGAATCCACAAGTACGTGGATTCCACTGACGACGGCCTGCGG CGATTCTTCGACGTCCTTGATACCAATCTTGATAACAACCTACAGAAAGA GGAGCTTTACGAGGCCTTTCGACGTATCCTGAACGATTTTGGTGTCTGGA ACGGTGGTCGTGCTGAATTTCGGGCCTATTGGGAAGCAACATGGGCCCAG ATTTTGGATGTTTTGGCAGGAATGGTGCTCGTGGCACCTCAAGGAGAATC GGAGGAGCAGGTAGAGATGGGACCATTTTGTTTCGAGGCCTTTGCTGTGC TCTTGCGTCGGTTGAAGTTGGAGCTGGCCTTGCGTGTGTGGGAGAAGGAT GGCAGCCTGGAGACGATGCCTTCGGCGGTACAGAAGTCCATGGTGAAGAT CGACATAAAGGGGAGAATAGATGGGAATAAACGATTTGCGAGTGAGACTG AGGTAAATCATCGCAAGTATCGCGGTGCTGGCACCCGCACAAGTCACATA ACGCCAGCAGCTGCTACGACAGAGTGGGCAAGAAGGCTAAGTTCGCTGAT GCAGTTGGAGGAGGAAGAGGTGGTATTCAAAACGTACACATGGAATGCCC GGACGGTGATGTGTTTGGATGTAAGCCGGCGTCATATGCGAGACTTTTTC TTGTGTCACCGCGGTCCAGAATGGACGATGCGATGGGTAATTGCCGATTC GTCGGACCGTGCAAATATTATTCGGCTGAGTATTAAGTATCGATTCCATC CTTTGCATTTGGAAGATGTGCTCAACATGGAACGGCAGCAGCCACGATTT CTCAAGTATGGAGGGCATTACTTTGTGATTCTACCCTTGCTGCGTCTCAT TCCGGAGAGCGTGAAGGAGGAAGGGGGAAAAGAGGGGGCCCCGACAGGAG CAGACTCAACGACCGTTTGTGACGGCGGTGGTGTGTTTGGTAAGGGTTCT CGCACATGCGGGCTTGAGAACATTGCGATTGAGAAATCTCGAATAGCTAT CTTTGCCTCGGGCCCGCCCCATTTCGATACCATCATTAGTATCCACGGCG CGTGGTGGCGGGTCCGTAATCGGTGCTGTGTTCATCCTCCTTCGAGTAGC AGCAGTAGTCGGGCCAGCACCGCTGCTGCTGCTTTTGCTGCTGCTTCCTC CTCTTACAACCACCATCTGAAGAAACGAAAAGCTTCCTCGGAAATCCAAT CAGTCGGCGAGGGGATACACGACACATTCCTCACCCCCTCTGTTGCGCCC CGATCAGGACCAGGAAAACAAGGGTCGCCATTGACTTCGATCCGATTCGA CTCGGAGGACCATATCATTGTTCCGGCAATAGAGGAACCTCTGGCTGCTG AATGCAGCCCTTCGGGAGCCCCGACGAGTGTCTTGGAAGAGGCTGCTCGC TTGCTGCACGAGGACTATAGCAACGTCAGACATGGGAACTCGAATTGGAT GCTGCATGCCATGGTAGAGACTACGACCAAGATGCTTGTGCCTATAGTCG CGGCGTATGACAGAAGACTAAGGCTGTTTCGAGATGAGTTGGATGGTCCG GATGCAGTGAGGATGAGGGAGCGTTTGAGTAAGCCCATTATGGATGTGAA GCACGATTTAATTTGGTTGCAGAAGAAGGTGAAAAGCATGAAGCCCGTGC TGAGGAGCTTGATTGGCTGCCCCAAATTGGCAGGGGATGGAGGGGGGGAG GTGGTGTTCTATCTGCAGGGGGTTGACGATGACTTAGAGATTTTGTCTGA TGATATCAATACGATGCTGGTGCTGGCACAGGGGTTGTTGGATGAGAGCA AATATTTGAAGGATGACACAAGAAACGAGGCATTAAAACTCTTTGCCGTC ATGACTGCCACCTTCTGTCCTTTGCAGTTCCTAACGGGATATTTTGGCAC GAACTTCTGGGACATTGACACCGACCGCTCGAGCGTCCCCCTCATGAATG ATCCCAATGGCCCCCTCTTTTTTTGGTTGATGTGCTGGCTGCTGGCTTCG GGCTTCCTGGCGTATGTACGCTTCAGTCGTGAGTGGATATAG back to top
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