NO07G03710.1, NO07G03710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03710.1
Unique NameNO07G03710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1614
Alignment locationchr7:1032119..1034495 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1032119..1034495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03710.1 vs.
Match: EWM27011.1 (rab gtpase [Nannochloropsis gaditana])

HSP 1 Score: 370.2 bits (949), Expect = 9.500e-99
Identity = 236/449 (52.56%), Postives = 277/449 (61.69%), Query Frame = 0 
Query:    1 MADPPEAAPAATTTPPRRRGPSV-LETANSSWSVSALRYHHENMGPIVPTVGGFALVKLGEAGGSPFKGKAGVGLGLSPVRSSDSTPYAPGAGNLLLVSENYS-------GGHSADGTQTTAAAAGGCATCHPVTSSPSSSP--ARRAHVTIIRSVDEDEEEKYGDEETMEGEGGRLGDGSQEGRAAAASVPGSARTSRSSSSGTAPLCCRNCGSTEVVKKNSSLGSASLDSLKAAAVLSGVPLSTCKLLVVGNAKCGKTSVIRRFVQGNFQNAYISTVGADYLKRDVVLRDGRPVRLQLWDIAGQDRFVHLTRAYFRRAKGVLVVCDLTRENTFEAVKAWKKEIDEWARLEGREAGIPVVLIANKCDMLTDATDSFLAGANMVAMCHEQKFASWYVTSAKSGNNVDDAFFDLVERAMEVKEEKEMPSGGEKEGGGGKGEGGFKLSAVD 440
            MAD     P + +   R   PS  L T   SWS S     H ++ P+VPT GGFA +KLG + G   +          PV S+           LL  ++  +       G H+        +       C P  S         ++ +  II SVD DE+  Y  EET E  G   G    E          S+ TS  +      +   +C ST+   +N  L S SL SL++AA+ SGVP+S CKLLVVGNAKCGKTSVIRRFVQGNF+NAY+STVGADYLKRDV+L+DGRPVRLQLWDIAGQDRFVHLTR YF RAKGVLVVCDLTRE TFEAV++WK EIDEWAR EGRE GIPVVLIANKCDMLTDA DSF+AGANM +MCHEQKFASWYVTSAKSG+NV+ AF DLVERAM+ KE  ++    EK     KG  GFKLSA D
Sbjct:    1 MADDDPDFPLSPSRRERHHIPSASLLTPVPSWSTSVHYSCHHDLRPMVPTAGGFASIKLGSSSGVKAQEA-----NRPPVTSNTDASSTCALSTLLPYTKAVTPIPPSSFGIHNRGTASWEKSHPTERCMCCPYHSHHKMDAILTQKQNEIIIESVDNDED--YEVEETKEECGTFYGGNFTES--------SSSSTSPDNRLDALSIPSESCSSTDSDIQNQPLASLSLQSLQSAAIRSGVPVSICKLLVVGNAKCGKTSVIRRFVQGNFKNAYVSTVGADYLKRDVILKDGRPVRLQLWDIAGQDRFVHLTRVYFTRAKGVLVVCDLTREKTFEAVRSWKLEIDEWARTEGREGGIPVVLIANKCDMLTDAADSFVAGANMASMCHEQKFASWYVTSAKSGSNVETAFLDLVERAMDKKEVLDI----EK-----KGSFGFKLSAAD 425
The following BLAST results are available for this feature:
BLAST of NO07G03710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27011.19.500e-9952.56rab gtpase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03710NO07G03710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03710.1NO07G03710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03710.1.cds1NO07G03710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03710.1.cds2NO07G03710.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03710.1.cds3NO07G03710.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03710.1.cds4NO07G03710.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03710.1.cds5NO07G03710.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03710.1 ID=NO07G03710.1|Name=NO07G03710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1614bp
AAGACCTTGGTTGGGCAGACCTAATCCTCTCCCAAATGCTCACAAGCAAG
GCAATTCATTTCCATTGTCAACCATCCTGGAAAAAATGCAAGCACAGGCC
TGTGTCTCGCCTTTGTCCTTCACTGCGACCAGCGTCTCCACCAAGCAAGC
AACACTATCATCAACATCATGGCAGATCCCCCTGAGGCTGCTCCTGCCGC
AACGACGACACCGCCACGCCGCCGAGGCCCCTCCGTCCTCGAGACTGCCA
ACTCGTCTTGGAGTGTCAGTGCCCTGCGTTACCATCACGAAAACATGGGA
CCTATTGTGCCCACGGTCGGAGGGTTTGCCTTAGTCAAGCTAGGTGAGGC
GGGAGGGTCTCCCTTTAAAGGGAAGGCAGGTGTAGGCTTAGGCCTCTCTC
CTGTCAGGTCCAGCGACAGCACGCCATACGCACCGGGAGCTGGGAATTTG
CTGTTGGTCTCGGAGAATTATAGTGGCGGCCATAGTGCTGATGGTACCCA
AACGACCGCGGCGGCTGCTGGTGGGTGTGCGACATGTCATCCGGTCACTA
GCAGCCCGAGCTCAAGTCCCGCGAGAAGGGCCCATGTGACCATCATTCGC
AGCGTGGATGAGGACGAGGAAGAGAAATATGGTGATGAGGAAACGATGGA
AGGAGAAGGAGGGCGTTTGGGGGACGGCAGTCAGGAAGGCAGGGCGGCAG
CGGCGTCTGTTCCTGGGTCAGCAAGGACCAGCAGGAGCAGTAGCAGCGGT
ACAGCACCCTTGTGCTGCCGAAATTGTGGCTCAACAGAAGTGGTGAAGAA
GAATTCCTCGCTAGGTTCTGCCTCCCTCGACTCCCTCAAAGCAGCCGCCG
TCCTAAGCGGGGTCCCCCTGTCCACATGCAAGCTGCTGGTGGTCGGCAAT
GCTAAATGCGGGAAGACCAGTGTCATTCGCCGATTCGTACAGGGTAACTT
CCAAAATGCTTATATCTCTACTGTCGGTGCCGATTACCTGAAGCGAGACG
TGGTTCTACGAGACGGGCGGCCCGTTAGGTTACAGCTGTGGGATATTGCT
GGACAAGACCGTTTTGTTCACTTGACGCGAGCTTACTTTAGACGAGCCAA
GGGCGTTCTTGTTGTCTGTGATCTAACCCGTGAGAACACGTTCGAGGCGG
TGAAGGCATGGAAGAAGGAAATCGACGAATGGGCTCGGTTAGAAGGGAGG
GAAGCCGGCATTCCCGTGGTGTTGATCGCAAATAAGTGCGACATGCTCAC
GGATGCCACGGACTCTTTTCTCGCTGGGGCTAACATGGTTGCCATGTGCC
ACGAACAGAAGTTTGCGTCGTGGTACGTGACGTCGGCCAAATCAGGGAAT
AATGTGGATGACGCATTCTTCGACCTGGTGGAGCGGGCGATGGAAGTGAA
GGAAGAAAAGGAAATGCCCTCGGGAGGAGAGAAGGAAGGGGGAGGTGGAA
AAGGGGAGGGAGGGTTCAAATTGTCGGCGGTGGATGGGATGGAGGAGAGG
GGAGTAAGAGGTGGAGGAGGAGCATTTGGATGGTCCATGTGCTAGTTTTA
TGTTCTATTGAGCGGGTTTTGGGGGGTCGGAAGAAACAAGTGACAGCATC
TTGTACAATAAAAA
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protein sequence of NO07G03710.1

>NO07G03710.1-protein ID=NO07G03710.1-protein|Name=NO07G03710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=459bp
MADPPEAAPAATTTPPRRRGPSVLETANSSWSVSALRYHHENMGPIVPTV
GGFALVKLGEAGGSPFKGKAGVGLGLSPVRSSDSTPYAPGAGNLLLVSEN
YSGGHSADGTQTTAAAAGGCATCHPVTSSPSSSPARRAHVTIIRSVDEDE
EEKYGDEETMEGEGGRLGDGSQEGRAAAASVPGSARTSRSSSSGTAPLCC
RNCGSTEVVKKNSSLGSASLDSLKAAAVLSGVPLSTCKLLVVGNAKCGKT
SVIRRFVQGNFQNAYISTVGADYLKRDVVLRDGRPVRLQLWDIAGQDRFV
HLTRAYFRRAKGVLVVCDLTRENTFEAVKAWKKEIDEWARLEGREAGIPV
VLIANKCDMLTDATDSFLAGANMVAMCHEQKFASWYVTSAKSGNNVDDAF
FDLVERAMEVKEEKEMPSGGEKEGGGGKGEGGFKLSAVDGMEERGVRGGG
GAFGWSMC*
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mRNA from alignment at chr7:1032119..1034495+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03710.1 ID=NO07G03710.1|Name=NO07G03710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2377bp|location=Sequence derived from alignment at chr7:1032119..1034495+ (Nannochloropsis oceanica)
AAGACCTTGGTTGGGCAGACCTAATCCTCTCCCAAATGCTCACAAGCAAG
GCAATTCATTTCCATTGTCAACCATCCTGGAAAAAATGCAAGCACAGGCC
TGTGTCTCGCCTTTGTCCTTCACTGCGACCAGCGTCTCCACCAAGCAAGC
AACACTATCATCAACATCATGGCAGATCCCCCTGAGGCTGCTCCTGCCGC
AACGACGACACCGCCACGCCGCCGAGGCCCCTCCGTCCTCGAGACTGCCA
ACTCGTCTTGGAGTGTCAGTGCCCTGCGTTACCATCACGAAAACATGGGA
CCTATTGTGCCCACGGTCGGAGGGTTTGCCTTAGTCAAGCTAGGTGAGGC
GGGAGGGTCTCCCTTTAAAGGGAAGGCAGGTGTAGGCTTAGGCCTCTCTC
CTGTCAGGTCCAGCGACAGCACGCCATACGCACCGGGAGCTGGGAATTTG
CTGTTGGTCTCGGAGAATTATAGTGGCGGCCATAGTGCTGATGGTACCCA
AACGACCGCGGCGGCTGCTGGTGGGTGTGCGACATGTCATCCGGTCACTA
GCAGCCCGAGCTCAAGTCCCGCGAGAAGGGCCCATGTGACCATCATTCGC
AGCGTGGATGAGGACGAGGAAGAGAAATATGGTGATGAGGAAACGATGGA
AGGAGAAGGAGGGCGTTTGGGGGACGGCAGTCAGGAAGGCAGGGCGGCAG
CGGCGTCTGTTCCTGGGTCAGCAAGGACCAGCAGGAGCAGTAGCAGCGGT
ACAGCACCCTTGTGCTGCCGAAATTGTGGCTCAACAGAAGTGGTGAAGAA
GGCAAGTCGTTTCAAAAGGGACAATCAAGAGTGTCTTGTCGTTTATTTTG
TTTATTTTGTTTCTCTATGAGGTGATATAAGAGGCGAAAATCATCCAAAA
CGCTTTTGCCTACAGAGGTCCCAAGACCTGTCACCAAGAAGTATATGCCC
ATGCTCACCCATATATGTCCACGCTCACCTGCCCCTTTTACCTCATCTAC
CACCCTCCAATACTTTTTGACAGAATTCCTCGCTAGGTTCTGCCTCCCTC
GACTCCCTCAAAGCAGCCGCCGTCCTAAGCGGGGTCCCCCTGTCCACATG
CAAGCTGCTGGTGGTCGGCAATGCTAAATGCGGGAAGACCAGTGTCATTC
GCCGATTCGTACAGGGTAACTTCCAAAATGTACGTAAGGGGGCATATTTA
TCGTAAATGAATTTTAATTCGGCAAAAACTCGACGTGCGTCTGTCCCTTT
GAGACGCATTCTTCCACTCAATCATTCGTGTGCGTGACCGCCAAACAACA
ACACAACCAATCAATGCACAGGCTTATATCTCTACTGTCGGTGCCGATTA
CCTGAAGCGAGACGTGGTTCTACGAGACGGGCGGCCCGTTAGGTTACAGC
TGTGGGATATTGCTGGACAAGACCGTTTTGTTCACTTGACGCGAGCTTAC
TTTAGACGAGGTAAGGAAGAGTGGGATGGAGAGGTGGAAGGAGGGGAGGA
TGACCATCACGGGATATGGCGGCAACTCATGCTCGCTTTTTCGCCAATTC
TTACTTCGCTGATGATTCACTCGTCTTTCCTCCCTCCCTGGCTCACTCCC
TCGCGCCTCAAGCCAAGGGCGTTCTTGTTGTCTGTGATCTAACCCGTGAG
AACACGTTCGAGGCGGTGAAGGCATGGAAGAAGGAAATCGACGAATGGGC
TCGGTTAGAAGGGAGGGAAGCCGGCATTCCCGTGGTGTTGATCGCAAATA
AGGTATGTGGGATTATCTTGGAGGCTTTGGGGTCGGGGTGGGTTGCGAAA
GTTGAAAAAGATGGGTGGCGAACGTTGGGAGGGTGTGTAAATGCTCTTCC
GTTCTAGCTTGCTTGTCATGACTTTATTGGGTTTCTTCCTGACCTATGCC
GAATAATATTCCGTTGAGAAAAGTGATCTAGCACCATCTGTCTTCATGGA
GTATCCTTCCTTTCACCCTTCCTCTTTGCCACCTCATCACTACTACTAGT
GCGACATGCTCACGGATGCCACGGACTCTTTTCTCGCTGGGGCTAACATG
GTTGCCATGTGCCACGAACAGAAGTTTGCGTCGTGGTACGTGACGTCGGC
CAAATCAGGGAATAATGTGGATGACGCATTCTTCGACCTGGTGGAGCGGG
CGATGGAAGTGAAGGAAGAAAAGGAAATGCCCTCGGGAGGAGAGAAGGAA
GGGGGAGGTGGAAAAGGGGAGGGAGGGTTCAAATTGTCGGCGGTGGATGG
GATGGAGGAGAGGGGAGTAAGAGGTGGAGGAGGAGCATTTGGATGGTCCA
TGTGCTAGTTTTATGTTCTATTGAGCGGGTTTTGGGGGGTCGGAAGAAAC
AAGTGACAGCATCTTGTACAATAAAAA
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Coding sequence (CDS) from alignment at chr7:1032119..1034495+

>NO07G03710.1 ID=NO07G03710.1|Name=NO07G03710.1|organism=Nannochloropsis oceanica|type=CDS|length=1377bp|location=Sequence derived from alignment at chr7:1032119..1034495+ (Nannochloropsis oceanica)
ATGGCAGATCCCCCTGAGGCTGCTCCTGCCGCAACGACGACACCGCCACG
CCGCCGAGGCCCCTCCGTCCTCGAGACTGCCAACTCGTCTTGGAGTGTCA
GTGCCCTGCGTTACCATCACGAAAACATGGGACCTATTGTGCCCACGGTC
GGAGGGTTTGCCTTAGTCAAGCTAGGTGAGGCGGGAGGGTCTCCCTTTAA
AGGGAAGGCAGGTGTAGGCTTAGGCCTCTCTCCTGTCAGGTCCAGCGACA
GCACGCCATACGCACCGGGAGCTGGGAATTTGCTGTTGGTCTCGGAGAAT
TATAGTGGCGGCCATAGTGCTGATGGTACCCAAACGACCGCGGCGGCTGC
TGGTGGGTGTGCGACATGTCATCCGGTCACTAGCAGCCCGAGCTCAAGTC
CCGCGAGAAGGGCCCATGTGACCATCATTCGCAGCGTGGATGAGGACGAG
GAAGAGAAATATGGTGATGAGGAAACGATGGAAGGAGAAGGAGGGCGTTT
GGGGGACGGCAGTCAGGAAGGCAGGGCGGCAGCGGCGTCTGTTCCTGGGT
CAGCAAGGACCAGCAGGAGCAGTAGCAGCGGTACAGCACCCTTGTGCTGC
CGAAATTGTGGCTCAACAGAAGTGGTGAAGAAGAATTCCTCGCTAGGTTC
TGCCTCCCTCGACTCCCTCAAAGCAGCCGCCGTCCTAAGCGGGGTCCCCC
TGTCCACATGCAAGCTGCTGGTGGTCGGCAATGCTAAATGCGGGAAGACC
AGTGTCATTCGCCGATTCGTACAGGGTAACTTCCAAAATGCTTATATCTC
TACTGTCGGTGCCGATTACCTGAAGCGAGACGTGGTTCTACGAGACGGGC
GGCCCGTTAGGTTACAGCTGTGGGATATTGCTGGACAAGACCGTTTTGTT
CACTTGACGCGAGCTTACTTTAGACGAGCCAAGGGCGTTCTTGTTGTCTG
TGATCTAACCCGTGAGAACACGTTCGAGGCGGTGAAGGCATGGAAGAAGG
AAATCGACGAATGGGCTCGGTTAGAAGGGAGGGAAGCCGGCATTCCCGTG
GTGTTGATCGCAAATAAGTGCGACATGCTCACGGATGCCACGGACTCTTT
TCTCGCTGGGGCTAACATGGTTGCCATGTGCCACGAACAGAAGTTTGCGT
CGTGGTACGTGACGTCGGCCAAATCAGGGAATAATGTGGATGACGCATTC
TTCGACCTGGTGGAGCGGGCGATGGAAGTGAAGGAAGAAAAGGAAATGCC
CTCGGGAGGAGAGAAGGAAGGGGGAGGTGGAAAAGGGGAGGGAGGGTTCA
AATTGTCGGCGGTGGATGGGATGGAGGAGAGGGGAGTAAGAGGTGGAGGA
GGAGCATTTGGATGGTCCATGTGCTAG
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Synonyms
Publications