NO07G03210.1, NO07G03210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03210.1
Unique NameNO07G03210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1839
Alignment locationchr7:886410..888596 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:886410..888596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03210.1 vs.
Match: EWM27038.1 (drug metabolite transporter superfamily [Nannochloropsis gaditana])

HSP 1 Score: 401.0 bits (1029), Expect = 5.300e-108
Identity = 208/291 (71.48%), Postives = 246/291 (84.54%), Query Frame = 0 
Query:  185 LYMGIGPTLILVNKHIIKDLDNGRGFNYPMFLSSLGLISSSIVAHLVVRVFGYKLHNQARMTRQMYLWNVVPVGICQAATLTLGNAVYMFLTVSFIQMLKAFTPVMVLAVGVLLHVEVSEPRIVMSVMGICLGTALASLGEVNFNLPGILLMMAAELTEAIRLILVQHFLQSLRFGIVESQFYMAPAGALCLMGASVLTEYKSMHANGAFSQIFAHPALFFLAGTLGVGVNFSSYLVVQQTNSVTLKVLGAARNAGLVLLSVLYYGELVSGTQASGYAVSLCCFGLYSYLK 476
            +YM +GPTLIL+NKHI+KDLD G GFNYPMFLSSLGL+SSS+VAH  VRV G++L NQARMTRQ YL  +VPVGICQAATL LGNAVYMFLTVSFIQMLKAFTPVMVL VG+L  VE  E  I M+VMGICLGT++AS GEVN NL G+LLM +AE TEAIRL+LVQ FL+SLRFG+VES ++M+PAGA+CL+ AS+++E+ SMH NGAF+Q+ +HP LF  AGTLGVGV+F S++VVQ+TNSVTLKVLG ARNA LVLLSV +YGELVS TQ  GYA S+  FG Y+Y +
Sbjct:    1 MYMAVGPTLILLNKHILKDLD-GHGFNYPMFLSSLGLLSSSLVAHFAVRVGGFELPNQARMTRQTYLTTIVPVGICQAATLALGNAVYMFLTVSFIQMLKAFTPVMVLVVGILFQVEAPEAAICMAVMGICLGTSVASYGEVNMNLTGMLLMFSAEFTEAIRLVLVQRFLKSLRFGVVESLYFMSPAGAVCLLCASIMSEFPSMHRNGAFAQVASHPLLFATAGTLGVGVHFLSFMVVQRTNSVTLKVLGTARNAMLVLLSVFWYGELVSSTQFLGYATSIAFFGFYTYCR 290
The following BLAST results are available for this feature:
BLAST of NO07G03210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27038.15.300e-10871.48drug metabolite transporter superfamily [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03210NO07G03210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03210.1NO07G03210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03210.1.cds1NO07G03210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03210.1.cds2NO07G03210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03210.1.cds3NO07G03210.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03210.1 ID=NO07G03210.1|Name=NO07G03210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1839bp
ATTTAAATGGGCTCAGTGCGGCTTGTGGGCGATTATGATGATTCAATTCC
GAGAGACTTCTTCATCATCCTATGTCGGAGGCAGTTTGCTGCATGGAAGC
ACCCGAGCCTGAGCGGTCACGTATTTCTACTAAGCTGCAGGACCTACATT
CAAGCTCACACACAACCACGAACTACATAACCCGATGCCACACAACTAAA
GTGAGTCGTGCATGGGCTGGGCCGCTCTCAGCGACGTTGCTTTAGCGATC
GCGAGGACATGGGCAAGAAGCCATACGCACAAACCCCTATGCCTAAAGCC
AGAGCACGCACGAAGCCACGCATCAAAATACCGCAAACACTACGATCACA
GAAAATCCCTTGTTCTGTCGTCTGGGTTGCTGTTGCTCCGGCAGCAATGG
TATCACCTTGGCCTTATTTCTCAATACCCCGATATCACACCTCACCTCCA
CTTTCCTTCGCACACGTACGGCACAGATTCAAACGCCATGATGCTGCAGC
AGACCCCTTGGTGCACGCGCGAGGGGAAGCGCACATCCATGGTGAATGTA
TCAGTGTCCCCTGCACCGCTAGAAGCCGGTAAGGTGGTCAACGGCGTGCG
GATCATCGAAAGTGAGGAGAACTCCACTATCACCCGCCACAGCAAATTGG
ACAAGGAGCCATTGCTGAATTCGATCTACCAGGAGGTTCCGGGAGGGGAG
TCCGTCGCAGTTTTGAGTCTTTACCGATTTATGCAGGCCAGTAAGACAGT
GCTGCTTTGTGGCTTGTACATGGGCATTGGTCCCACCCTTATCCTCGTCA
ACAAGCACATCATCAAGGATCTGGATAATGGCCGTGGTTTCAATTACCCC
ATGTTTCTTTCCTCCTTGGGTCTCATTTCGTCCTCAATCGTCGCGCATCT
TGTCGTCCGTGTATTCGGATATAAGCTACACAATCAAGCAAGAATGACAC
GGCAGATGTATTTATGGAATGTGGTCCCCGTGGGAATTTGCCAGGCTGCA
ACGCTGACATTGGGCAACGCCGTATATATGTTCTTAACCGTCTCGTTCAT
CCAGATGCTCAAGGCGTTCACGCCGGTGATGGTGTTGGCGGTGGGGGTGC
TTTTGCATGTGGAGGTATCGGAGCCGCGGATCGTTATGTCCGTGATGGGC
ATCTGTCTCGGCACGGCCCTTGCCTCCTTGGGCGAAGTCAATTTTAACCT
CCCAGGGATCTTGTTGATGATGGCCGCGGAGCTCACCGAAGCCATCCGCT
TGATATTAGTCCAACACTTTTTGCAATCCCTCAGGTTTGGGATCGTGGAG
TCGCAGTTCTACATGGCGCCTGCTGGGGCCCTCTGTCTGATGGGTGCCAG
TGTTCTCACTGAATATAAAAGCATGCATGCCAATGGGGCGTTTTCTCAAA
TTTTTGCTCATCCGGCCTTGTTCTTCCTTGCGGGAACTCTGGGGGTGGGA
GTCAATTTTTCTAGCTACTTGGTTGTGCAGCAGACGAACTCAGTGACGTT
GAAGGTGTTGGGAGCGGCGAGAAATGCAGGATTGGTGTTATTAAGTGTTT
TATACTACGGAGAGTTGGTAAGTGGGACGCAGGCGTCTGGCTACGCGGTT
AGCTTGTGCTGTTTTGGGTTGTATTCCTACCTCAAGATGAATAAGAACGT
GTAAATAAGATGCAGAGGTGGGTGAGAAAGAAGGAGGTGTGTAAAATGAA
AGGGAAGGGAAGGAGGGCGTCTGGCAGCGTGGGACGGACGTTTTTTTTTT
GTGCGAGACCGTATGCCGTGTTGTCCGATCGAAATCTTGTGTAGATCACT
TTTGTTCTCAAACCAAGAATTATATCAATCGAATACTGC
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protein sequence of NO07G03210.1

>NO07G03210.1-protein ID=NO07G03210.1-protein|Name=NO07G03210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=481bp
MGWAALSDVALAIARTWARSHTHKPLCLKPEHARSHASKYRKHYDHRKSL
VLSSGLLLLRQQWYHLGLISQYPDITPHLHFPSHTYGTDSNAMMLQQTPW
CTREGKRTSMVNVSVSPAPLEAGKVVNGVRIIESEENSTITRHSKLDKEP
LLNSIYQEVPGGESVAVLSLYRFMQASKTVLLCGLYMGIGPTLILVNKHI
IKDLDNGRGFNYPMFLSSLGLISSSIVAHLVVRVFGYKLHNQARMTRQMY
LWNVVPVGICQAATLTLGNAVYMFLTVSFIQMLKAFTPVMVLAVGVLLHV
EVSEPRIVMSVMGICLGTALASLGEVNFNLPGILLMMAAELTEAIRLILV
QHFLQSLRFGIVESQFYMAPAGALCLMGASVLTEYKSMHANGAFSQIFAH
PALFFLAGTLGVGVNFSSYLVVQQTNSVTLKVLGAARNAGLVLLSVLYYG
ELVSGTQASGYAVSLCCFGLYSYLKMNKNV*
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mRNA from alignment at chr7:886410..888596+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03210.1 ID=NO07G03210.1|Name=NO07G03210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2187bp|location=Sequence derived from alignment at chr7:886410..888596+ (Nannochloropsis oceanica)
ATTTAAATGGGCTCAGTGCGGCTTGTGGGCGATTATGATGATTCAATTCC
GAGAGACTTCTTCATCATCCTATGTCGGAGGCAGTTTGCTGCATGGAAGC
ACCCGAGCCTGAGCGGTCACGTATTTCTACTAAGCTGCAGGACCTACATT
CAAGCTCACACACAACCACGAACTACATAACCCGATGCCACACAACTAAA
GTGAGTCGTGCATGGGCTGGGCCGCTCTCAGCGACGTTGCTTTAGCGATC
GCGAGGACATGGGCAAGAAGCCATACGCACAAACCCCTATGCCTAAAGCC
AGAGCACGCACGAAGCCACGCATCAAAATACCGCAAACACTACGATCACA
GAAAATCCCTTGTTCTGTCGTCTGGGTTGCTGTTGCTCCGGCAGCAATGG
TATCACCTTGGCCTTATTTCTCAATACCCCGATATCACACCTCACCTCCA
CTTTCCTTCGCACACGTACGGCACAGATTCAAACGCCATGATGCTGCAGC
AGACCCCTTGGTGCACGCGCGAGGGGAAGCGCACATCCATGGTGAATGTA
TCAGTGTCCCCTGCACCGCTAGAAGCCGGTAAGGTGGTCAACGGCGTGCG
GATCATCGAAAGTGAGGAGAACTCCACTATCACCCGCCACAGCAAATTGG
ACAAGGAGCCATTGCTGAATTCGATCTACCAGGAGGTTCCGGGAGGGGAG
TCCGTCGCAGTTTTGAGTCTTTACCGATTTATGCAGGCCAGTAAGACAGT
GCTGCTTTGTGGCTTGTACATGGGCATTGGTATGTGACAAGTGTAGGCTA
TTGGTGGATCGCGAATCTCTACATTCTGTGTTTTTTTGTCTTCCAAATTG
GATCTCGTATCGGAGTGTATCTTCCACCTGTCATTTAGTCATAGTGTCAT
CATGCATTTTCCAAGTGCCTTTCGTCTATTGCTTTTACCAATCAACTTAA
TGCTAAGCACTTATCGATGTTTCCCCAACCCTCCTTCCCTCTCCGCATCC
CCACCCACTGTATAAACAGGTCCCACCCTTATCCTCGTCAACAAGCACAT
CATCAAGGATCTGGATAATGGCCGTGGTTTCAATTACCCCATGTTTCTTT
CCTCCTTGGGTCTCATTTCGTCCTCAATCGTCGCGCATCTTGTCGTCCGT
GTATTCGGATATAAGCTACACAATCAAGCAAGAATGACACGGCAGATGTA
TTTATGGAATGTGGTCCCCGTGGGAATTTGCCAGGCTGCAACGCTGACAT
TGGGCAACGCCGTATATATGTTCTTAACCGTCTCGTTCATCCAGATGCTC
AAGGCGTTCACGCCGGTGATGGTGTTGGCGGTGGGGGTGCTTTTGCATGT
GGAGGTATCGGAGCCGCGGGTAGGTTTCTCGGTGAATTGAGGGGACTGGG
GAAATCAGGGCGCTTATCAACGACCAAATAATCACTTCTACACTTTCTTT
CTATTTTTTTCTTTTTCTCTCTTCTAGATCGTTATGTCCGTGATGGGCAT
CTGTCTCGGCACGGCCCTTGCCTCCTTGGGCGAAGTCAATTTTAACCTCC
CAGGGATCTTGTTGATGATGGCCGCGGAGCTCACCGAAGCCATCCGCTTG
ATATTAGTCCAACACTTTTTGCAATCCCTCAGGTTTGGGATCGTGGAGTC
GCAGTTCTACATGGCGCCTGCTGGGGCCCTCTGTCTGATGGGTGCCAGTG
TTCTCACTGAATATAAAAGCATGCATGCCAATGGGGCGTTTTCTCAAATT
TTTGCTCATCCGGCCTTGTTCTTCCTTGCGGGAACTCTGGGGGTGGGAGT
CAATTTTTCTAGCTACTTGGTTGTGCAGCAGACGAACTCAGTGACGTTGA
AGGTGTTGGGAGCGGCGAGAAATGCAGGATTGGTGTTATTAAGTGTTTTA
TACTACGGAGAGTTGGTAAGTGGGACGCAGGCGTCTGGCTACGCGGTTAG
CTTGTGCTGTTTTGGGTTGTATTCCTACCTCAAGATGAATAAGAACGTGT
AAATAAGATGCAGAGGTGGGTGAGAAAGAAGGAGGTGTGTAAAATGAAAG
GGAAGGGAAGGAGGGCGTCTGGCAGCGTGGGACGGACGTTTTTTTTTTGT
GCGAGACCGTATGCCGTGTTGTCCGATCGAAATCTTGTGTAGATCACTTT
TGTTCTCAAACCAAGAATTATATCAATCGAATACTGC
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Coding sequence (CDS) from alignment at chr7:886410..888596+

>NO07G03210.1 ID=NO07G03210.1|Name=NO07G03210.1|organism=Nannochloropsis oceanica|type=CDS|length=1443bp|location=Sequence derived from alignment at chr7:886410..888596+ (Nannochloropsis oceanica)
ATGGGCTGGGCCGCTCTCAGCGACGTTGCTTTAGCGATCGCGAGGACATG
GGCAAGAAGCCATACGCACAAACCCCTATGCCTAAAGCCAGAGCACGCAC
GAAGCCACGCATCAAAATACCGCAAACACTACGATCACAGAAAATCCCTT
GTTCTGTCGTCTGGGTTGCTGTTGCTCCGGCAGCAATGGTATCACCTTGG
CCTTATTTCTCAATACCCCGATATCACACCTCACCTCCACTTTCCTTCGC
ACACGTACGGCACAGATTCAAACGCCATGATGCTGCAGCAGACCCCTTGG
TGCACGCGCGAGGGGAAGCGCACATCCATGGTGAATGTATCAGTGTCCCC
TGCACCGCTAGAAGCCGGTAAGGTGGTCAACGGCGTGCGGATCATCGAAA
GTGAGGAGAACTCCACTATCACCCGCCACAGCAAATTGGACAAGGAGCCA
TTGCTGAATTCGATCTACCAGGAGGTTCCGGGAGGGGAGTCCGTCGCAGT
TTTGAGTCTTTACCGATTTATGCAGGCCAGTAAGACAGTGCTGCTTTGTG
GCTTGTACATGGGCATTGGTCCCACCCTTATCCTCGTCAACAAGCACATC
ATCAAGGATCTGGATAATGGCCGTGGTTTCAATTACCCCATGTTTCTTTC
CTCCTTGGGTCTCATTTCGTCCTCAATCGTCGCGCATCTTGTCGTCCGTG
TATTCGGATATAAGCTACACAATCAAGCAAGAATGACACGGCAGATGTAT
TTATGGAATGTGGTCCCCGTGGGAATTTGCCAGGCTGCAACGCTGACATT
GGGCAACGCCGTATATATGTTCTTAACCGTCTCGTTCATCCAGATGCTCA
AGGCGTTCACGCCGGTGATGGTGTTGGCGGTGGGGGTGCTTTTGCATGTG
GAGGTATCGGAGCCGCGGATCGTTATGTCCGTGATGGGCATCTGTCTCGG
CACGGCCCTTGCCTCCTTGGGCGAAGTCAATTTTAACCTCCCAGGGATCT
TGTTGATGATGGCCGCGGAGCTCACCGAAGCCATCCGCTTGATATTAGTC
CAACACTTTTTGCAATCCCTCAGGTTTGGGATCGTGGAGTCGCAGTTCTA
CATGGCGCCTGCTGGGGCCCTCTGTCTGATGGGTGCCAGTGTTCTCACTG
AATATAAAAGCATGCATGCCAATGGGGCGTTTTCTCAAATTTTTGCTCAT
CCGGCCTTGTTCTTCCTTGCGGGAACTCTGGGGGTGGGAGTCAATTTTTC
TAGCTACTTGGTTGTGCAGCAGACGAACTCAGTGACGTTGAAGGTGTTGG
GAGCGGCGAGAAATGCAGGATTGGTGTTATTAAGTGTTTTATACTACGGA
GAGTTGGTAAGTGGGACGCAGGCGTCTGGCTACGCGGTTAGCTTGTGCTG
TTTTGGGTTGTATTCCTACCTCAAGATGAATAAGAACGTGTAA
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Synonyms
Publications