NO07G02750.1, NO07G02750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02750.1
Unique NameNO07G02750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1062
Alignment locationchr7:789669..791162 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:789669..791162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02750.1 vs.
Match: EWM27114.1 (Eukaryotic rRNA processing [Nannochloropsis gaditana])

HSP 1 Score: 435.3 bits (1118), Expect = 1.900e-118
Identity = 252/359 (70.19%), Postives = 283/359 (78.83%), Query Frame = 0 
Query:    1 MGKKGLRKAGAAGLDSEERMALEEEDEFAKELAAAEEIRREQTLAGGGAANMNGK--DDEDDEDED-DETALQPRLREFLNNQNGLRQVLVEIETQNGPRPWPETMEVCQFPLGLDDVHDDLARETAFYRVALAAVKEGRARLAKHNVPYKRPEDFFCDMLKSDDHMARVKDRLLFEQKKITAVEERRKQQENRKFSKALKSHKAKEKTEDKKRTLDAVKQWKKDKAHRGGP---LQDDDGLDDVLAGRSPRGLFGARGRGRGGRGGGAGGAEGSRRLSKDKKYGFGGPKRHAKATDSKSLNDFSAFNPKKGKSFGPKGGSGGARGGRRGGNARGRGGGAKKGGNRPGKTSRAKARTMR 354
            MGKK   KA    LD +E +ALEEEDEFAKELAAAEE+ REQ L+    +  NG   D++ D+DED DE ALQPR R F+NNQ GL Q+L +IE++NG RPWPETM+VCQFPL L+DVHDDL RETAFYRVALA +KE RARL ++ VPYKRPEDFFCDMLKSDDHMARVKDRLLFEQKK+TAVEERRKQQENRKFSKALKSHKAKEKTEDKK+TL+AV QWKKD+A RGG    L+DDDG D +LAGRSP G FGA   G  GRG G G  + SRRLSKDKKYGFGGPKR  K  D+KSLNDFS FNPKKGK+FG +GG GG +G          GGGAKKGGNRPGKT+R K R+ R
Sbjct:    1 MGKKRTSKARTGALDPDELLALEEEDEFAKELAAAEEMEREQALSRTIDSTGNGDFLDEDGDKDEDEDEEALQPRPRVFINNQKGLLQMLGQIESENGSRPWPETMDVCQFPLLLNDVHDDLVRETAFYRVALAGIKEARARLVQYQVPYKRPEDFFCDMLKSDDHMARVKDRLLFEQKKMTAVEERRKQQENRKFSKALKSHKAKEKTEDKKKTLEAVNQWKKDRAQRGGGQGLLEDDDGFDRILAGRSPGGRFGA---GAAGRGEGGGRHDNSRRLSKDKKYGFGGPKRKLKQADTKSLNDFSTFNPKKGKTFGSRGGRGGKKG----------GGGAKKGGNRPGKTTRQKMRSKR 346
The following BLAST results are available for this feature:
BLAST of NO07G02750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27114.11.900e-11870.19Eukaryotic rRNA processing [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02750NO07G02750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02750.1NO07G02750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02750.1.cds1NO07G02750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02750.1.cds2NO07G02750.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02750.1.cds3NO07G02750.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02750.1 ID=NO07G02750.1|Name=NO07G02750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1062bp
ATGGGCAAGAAAGGCCTACGCAAGGCTGGGGCGGCGGGTCTGGACTCCGA
GGAGCGCATGGCATTGGAAGAAGAGGACGAGTTTGCCAAGGAGCTTGCGG
CGGCCGAGGAGATTAGAAGGGAGCAGACCCTGGCTGGTGGTGGGGCGGCT
AACATGAACGGTAAAGATGATGAGGATGACGAGGACGAGGATGATGAAAC
AGCCTTGCAGCCCCGGCTCCGGGAATTCCTCAACAATCAGAATGGGCTGC
GGCAAGTGCTGGTGGAAATCGAGACCCAAAATGGCCCGCGGCCTTGGCCC
GAGACCATGGAGGTATGCCAGTTTCCGCTTGGGTTGGACGATGTACACGA
TGATCTGGCACGAGAGACGGCGTTTTATCGCGTGGCGTTGGCGGCGGTGA
AGGAGGGACGGGCGCGGTTGGCCAAGCACAATGTCCCTTACAAGCGACCG
GAGGATTTCTTTTGTGATATGCTCAAGAGTGACGATCATATGGCGCGGGT
CAAGGACCGCTTGTTGTTCGAGCAGAAGAAGATCACGGCCGTGGAGGAAC
GCCGCAAGCAGCAGGAGAACAGGAAGTTCAGCAAGGCACTCAAATCACAC
AAAGCCAAGGAAAAGACAGAGGACAAAAAGCGCACCCTGGATGCTGTTAA
ACAATGGAAAAAGGATAAGGCGCACCGGGGTGGTCCGTTGCAGGATGACG
ATGGCCTGGACGACGTATTGGCAGGGCGCTCGCCTCGGGGACTGTTTGGA
GCCCGTGGCCGTGGTCGTGGCGGCAGGGGAGGGGGGGCTGGAGGAGCCGA
AGGGAGTCGACGGTTGTCCAAAGACAAGAAATATGGGTTTGGAGGACCGA
AGCGTCATGCCAAAGCTACGGACTCTAAGAGCTTGAATGATTTCTCGGCG
TTCAATCCAAAGAAGGGCAAGAGTTTTGGACCGAAGGGTGGGAGTGGAGG
GGCGAGGGGTGGGAGACGCGGTGGGAATGCGCGAGGGAGGGGAGGTGGGG
CTAAAAAAGGGGGAAACCGACCCGGCAAAACGTCCAGGGCGAAGGCGCGC
ACGATGCGCTAA
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protein sequence of NO07G02750.1

>NO07G02750.1-protein ID=NO07G02750.1-protein|Name=NO07G02750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MGKKGLRKAGAAGLDSEERMALEEEDEFAKELAAAEEIRREQTLAGGGAA
NMNGKDDEDDEDEDDETALQPRLREFLNNQNGLRQVLVEIETQNGPRPWP
ETMEVCQFPLGLDDVHDDLARETAFYRVALAAVKEGRARLAKHNVPYKRP
EDFFCDMLKSDDHMARVKDRLLFEQKKITAVEERRKQQENRKFSKALKSH
KAKEKTEDKKRTLDAVKQWKKDKAHRGGPLQDDDGLDDVLAGRSPRGLFG
ARGRGRGGRGGGAGGAEGSRRLSKDKKYGFGGPKRHAKATDSKSLNDFSA
FNPKKGKSFGPKGGSGGARGGRRGGNARGRGGGAKKGGNRPGKTSRAKAR
TMR*
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mRNA from alignment at chr7:789669..791162+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02750.1 ID=NO07G02750.1|Name=NO07G02750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1494bp|location=Sequence derived from alignment at chr7:789669..791162+ (Nannochloropsis oceanica)
ATGGGCAAGAAAGGCCTACGCAAGGCTGGGGCGGCGGGTCTGGACTCCGA
GGAGCGCATGGCATTGGAAGAAGAGGACGAGTTTGCCAAGGAGCTTGCGG
CGGCCGAGGAGATTAGAAGGGAGCAGACCCTGGCTGGTGGTGGGGCGGCT
AACATGAACGGTAAAGATGATGAGGATGACGAGGACGAGGATGATGAAAC
AGCCTTGCAGCCCCGGCTCCGGGAATTCCTCAACAATCAGAATGGGCTGC
GGCAAGTGCTGGTGGAAATCGAGACCCAAAATGGCCCGCGGCCTTGGCCC
GAGACCATGGAGGTATGCCAGTTTCCGCTTGGGTTGGACGATGTACACGA
TGATCTGGCACGAGAGACGGCGTTTTATCGCGTGGCGTTGGCGGCGGTGA
AGGAGGGACGGGCGCGGTTGGCCAAGCACAATGTCCCTTACAAGCGACCG
GAGGATTTCTTTTGTGATATGCTCAAGAGTGACGATCATATGGCGCGGGT
ACGTTCTTTTTTCCATTCAGAGGAGAAATGAGAGTTCTAGCCTGATTGCG
TGATTTGGTTATCGCGTTGATGTACGGTGGACAGCTATGATGTATTTACT
TTTGGGAGGAGATGGCTTGGGGGGGGACATTTGGGTAATTTGTGGGAGAC
AATCGACAGACCTGTGTTATCTACGACATTAAATTGTACGTGTTTTCTAT
CCTTGTCTCACTAACACAGGTCAAGGACCGCTTGTTGTTCGAGCAGAAGA
AGATCACGGCCGTGGAGGAACGCCGCAAGCAGCAGGAGAACAGGAAGTTC
AGCAAGGCACTCAAATCACACAAAGCCAAGGAAAAGACAGAGGACAAAAA
GCGCACCCTGGATGCTGTTAAACAATGGAAAAAGGATAAGGCGCACCGGT
ACGTGTACAGAGAAGAGGGAGGAAGAGGAAAGAGTGAGGGGAATGAGAAG
TAAAAGGAGACGTAAACAGGAAGAGAGCAAAAATGAGAGCAGATGACTGG
TGCGTGACTGGTGCCAAACTACGCGGGGAAGAGAATGAGATGATGTGTCG
ATTCATATAAGAGAACTCACTCGCATCGTCTCCTTGTTGTTAATACCAAT
AAATCACAGGGGTGGTCCGTTGCAGGATGACGATGGCCTGGACGACGTAT
TGGCAGGGCGCTCGCCTCGGGGACTGTTTGGAGCCCGTGGCCGTGGTCGT
GGCGGCAGGGGAGGGGGGGCTGGAGGAGCCGAAGGGAGTCGACGGTTGTC
CAAAGACAAGAAATATGGGTTTGGAGGACCGAAGCGTCATGCCAAAGCTA
CGGACTCTAAGAGCTTGAATGATTTCTCGGCGTTCAATCCAAAGAAGGGC
AAGAGTTTTGGACCGAAGGGTGGGAGTGGAGGGGCGAGGGGTGGGAGACG
CGGTGGGAATGCGCGAGGGAGGGGAGGTGGGGCTAAAAAAGGGGGAAACC
GACCCGGCAAAACGTCCAGGGCGAAGGCGCGCACGATGCGCTAA
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Coding sequence (CDS) from alignment at chr7:789669..791162+

>NO07G02750.1 ID=NO07G02750.1|Name=NO07G02750.1|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at chr7:789669..791162+ (Nannochloropsis oceanica)
ATGGGCAAGAAAGGCCTACGCAAGGCTGGGGCGGCGGGTCTGGACTCCGA
GGAGCGCATGGCATTGGAAGAAGAGGACGAGTTTGCCAAGGAGCTTGCGG
CGGCCGAGGAGATTAGAAGGGAGCAGACCCTGGCTGGTGGTGGGGCGGCT
AACATGAACGGTAAAGATGATGAGGATGACGAGGACGAGGATGATGAAAC
AGCCTTGCAGCCCCGGCTCCGGGAATTCCTCAACAATCAGAATGGGCTGC
GGCAAGTGCTGGTGGAAATCGAGACCCAAAATGGCCCGCGGCCTTGGCCC
GAGACCATGGAGGTATGCCAGTTTCCGCTTGGGTTGGACGATGTACACGA
TGATCTGGCACGAGAGACGGCGTTTTATCGCGTGGCGTTGGCGGCGGTGA
AGGAGGGACGGGCGCGGTTGGCCAAGCACAATGTCCCTTACAAGCGACCG
GAGGATTTCTTTTGTGATATGCTCAAGAGTGACGATCATATGGCGCGGGT
CAAGGACCGCTTGTTGTTCGAGCAGAAGAAGATCACGGCCGTGGAGGAAC
GCCGCAAGCAGCAGGAGAACAGGAAGTTCAGCAAGGCACTCAAATCACAC
AAAGCCAAGGAAAAGACAGAGGACAAAAAGCGCACCCTGGATGCTGTTAA
ACAATGGAAAAAGGATAAGGCGCACCGGGGTGGTCCGTTGCAGGATGACG
ATGGCCTGGACGACGTATTGGCAGGGCGCTCGCCTCGGGGACTGTTTGGA
GCCCGTGGCCGTGGTCGTGGCGGCAGGGGAGGGGGGGCTGGAGGAGCCGA
AGGGAGTCGACGGTTGTCCAAAGACAAGAAATATGGGTTTGGAGGACCGA
AGCGTCATGCCAAAGCTACGGACTCTAAGAGCTTGAATGATTTCTCGGCG
TTCAATCCAAAGAAGGGCAAGAGTTTTGGACCGAAGGGTGGGAGTGGAGG
GGCGAGGGGTGGGAGACGCGGTGGGAATGCGCGAGGGAGGGGAGGTGGGG
CTAAAAAAGGGGGAAACCGACCCGGCAAAACGTCCAGGGCGAAGGCGCGC
ACGATGCGCTAA
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Synonyms
Publications