NO07G02370.1, NO07G02370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02370.1
Unique NameNO07G02370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length531
Alignment locationchr7:696260..696790 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:696260..696790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO07G02370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02370NO07G02370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02370.1NO07G02370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02370.1.cds1NO07G02370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02370.1 ID=NO07G02370.1|Name=NO07G02370.1|organism=Nannochloropsis oceanica|type=mRNA|length=531bp
ATGGGGACGATCTTCTCCACGGACCATACTCCTGTACACCCTTTTGATGT
TACGTGCCTCATTGCCATCCCGAGACATCACAAGTCTCACACCACCAAAG
TCCTCGGATGGCCGCACGTGACCTCCTCCTCCTCCGCCGCCGCCGCCGCC
GCCATCTCCTCCTCTTCCTCCTCCTGGAACTCATTCTCTTTTTCTCCCTC
CCACTCATCCTCTACCTCCTCCTCCCGCTATTGCTCCTCTTTCTCTCCCT
CCCCCTCCTCCTCCGCCTCCCCGTCTTCCTCCGCCTCCTCCTCCTTCTCT
CCCTCCTCCTTCTCTCCCTCCTCTCCCTCTCCCTCCTCCTTCTCTCCCTC
CTCCACCACCTCTACCTCCTCCCCCTCCTCCTCCTCCTCCTCTTTTTCCT
CTTCTTCCTCCTCCTCCTCCTCCTTCTCCTTCTCCTCCTTCTTCTCCTTC
TCCTCCTTTTTCTTCTTCTTCTCCTTCTCCTCCTTGTTCTTCTCATTCTT
GTTCTTCTTCTTCTTCTTCTCCTTCTCCTAA
back to top

protein sequence of NO07G02370.1

>NO07G02370.1-protein ID=NO07G02370.1-protein|Name=NO07G02370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MGTIFSTDHTPVHPFDVTCLIAIPRHHKSHTTKVLGWPHVTSSSSAAAAA
AISSSSSSWNSFSFSPSHSSSTSSSRYCSSFSPSPSSSASPSSSASSSFS
PSSFSPSSPSPSSFSPSSTTSTSSPSSSSSSFSSSSSSSSSFSFSSFFSF
SSFFFFFSFSSLFFSFLFFFFFFSFS*
back to top

mRNA from alignment at chr7:696260..696790+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02370.1 ID=NO07G02370.1|Name=NO07G02370.1|organism=Nannochloropsis oceanica|type=mRNA|length=531bp|location=Sequence derived from alignment at chr7:696260..696790+ (Nannochloropsis oceanica)
ATGGGGACGATCTTCTCCACGGACCATACTCCTGTACACCCTTTTGATGT
TACGTGCCTCATTGCCATCCCGAGACATCACAAGTCTCACACCACCAAAG
TCCTCGGATGGCCGCACGTGACCTCCTCCTCCTCCGCCGCCGCCGCCGCC
GCCATCTCCTCCTCTTCCTCCTCCTGGAACTCATTCTCTTTTTCTCCCTC
CCACTCATCCTCTACCTCCTCCTCCCGCTATTGCTCCTCTTTCTCTCCCT
CCCCCTCCTCCTCCGCCTCCCCGTCTTCCTCCGCCTCCTCCTCCTTCTCT
CCCTCCTCCTTCTCTCCCTCCTCTCCCTCTCCCTCCTCCTTCTCTCCCTC
CTCCACCACCTCTACCTCCTCCCCCTCCTCCTCCTCCTCCTCTTTTTCCT
CTTCTTCCTCCTCCTCCTCCTCCTTCTCCTTCTCCTCCTTCTTCTCCTTC
TCCTCCTTTTTCTTCTTCTTCTCCTTCTCCTCCTTGTTCTTCTCATTCTT
GTTCTTCTTCTTCTTCTTCTCCTTCTCCTAA
back to top

Coding sequence (CDS) from alignment at chr7:696260..696790+

>NO07G02370.1 ID=NO07G02370.1|Name=NO07G02370.1|organism=Nannochloropsis oceanica|type=CDS|length=531bp|location=Sequence derived from alignment at chr7:696260..696790+ (Nannochloropsis oceanica)
ATGGGGACGATCTTCTCCACGGACCATACTCCTGTACACCCTTTTGATGT
TACGTGCCTCATTGCCATCCCGAGACATCACAAGTCTCACACCACCAAAG
TCCTCGGATGGCCGCACGTGACCTCCTCCTCCTCCGCCGCCGCCGCCGCC
GCCATCTCCTCCTCTTCCTCCTCCTGGAACTCATTCTCTTTTTCTCCCTC
CCACTCATCCTCTACCTCCTCCTCCCGCTATTGCTCCTCTTTCTCTCCCT
CCCCCTCCTCCTCCGCCTCCCCGTCTTCCTCCGCCTCCTCCTCCTTCTCT
CCCTCCTCCTTCTCTCCCTCCTCTCCCTCTCCCTCCTCCTTCTCTCCCTC
CTCCACCACCTCTACCTCCTCCCCCTCCTCCTCCTCCTCCTCTTTTTCCT
CTTCTTCCTCCTCCTCCTCCTCCTTCTCCTTCTCCTCCTTCTTCTCCTTC
TCCTCCTTTTTCTTCTTCTTCTCCTTCTCCTCCTTGTTCTTCTCATTCTT
GTTCTTCTTCTTCTTCTTCTCCTTCTCCTAA
back to top
Synonyms
Publications