NO07G02310.1, NO07G02310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02310.1
Unique NameNO07G02310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1359
Alignment locationchr7:683649..685440 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:683649..685440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02310.1 vs.
Match: EWM27192.1 (microtubule-associated protein rp eb family member 1 [Nannochloropsis gaditana])

HSP 1 Score: 400.6 bits (1028), Expect = 4.500e-108
Identity = 225/318 (70.75%), Postives = 252/318 (79.25%), Query Frame = 0 
Query:    1 MTTAIGMMDAGYFVGRKEIVDWVNETLQLSLSKVEQTASGAVACQLLDRIYPGKVPLGKVNWDAKLDYEFLSNYKILQNAFTRLKIDKHLPVEKLVRAKYQDNLEFMQWFKRFYELNNPALDYDPVAARAGGKGAGGAARILPAAGSSFSNSTRVGGTPSKPVAGRSNSRSIGSSASTSYTSGCVARDKENGGSRTIS-------NKPKVASVPLMDEVLVQKAEALQQENATLQATIEGLEKERDFYFEKLTVVEEMLQERQAGAGDDVIPEVAELVEQIFKVLYATESTTAPPASVVSVESSEAAAAAVAAPSAVV 312
            MTT+IGMMDAGYFVGRKEIVDW+NETLQL+L+KVEQTASGAVACQLLDRIYPGKVPL KVNW+AKLDYEFLSNYK+LQ AFT+L+IDKHLPVEKLVRAKYQDNLEFMQWFKRFYELNNPALDYDPV ARAGGKGAGG AR +P A + F +STR G  PS  +  R +SRSIGSS  +S  +G  ARDKEN G    +       N    A+  + DE L++KAE L QEN TLQATIEGLEKERDFYFEKLTVVEEMLQERQA A ++   E + L+E+IFKVLYATE+ T    S      SE AAAAV AP+AVV
Sbjct:   33 MTTSIGMMDAGYFVGRKEIVDWINETLQLNLTKVEQTASGAVACQLLDRIYPGKVPLNKVNWEAKLDYEFLSNYKLLQTAFTKLQIDKHLPVEKLVRAKYQDNLEFMQWFKRFYELNNPALDYDPVVARAGGKGAGGPARTIPPAAAPFCSSTRTGNMPSNSLKSRPSSRSIGSSTGSSSGNG-GARDKENSGGAIATSSSHGGRNVTTAAAATVADEALLRKAENLAQENTTLQATIEGLEKERDFYFEKLTVVEEMLQERQAAADENFSQEASLLIEEIFKVLYATENATG--LSDCDEPCSE-AAAAVEAPTAVV 346
The following BLAST results are available for this feature:
BLAST of NO07G02310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27192.14.500e-10870.75microtubule-associated protein rp eb family member... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02310NO07G02310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02310.1NO07G02310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02310.1.cds1NO07G02310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02310.1.cds2NO07G02310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02310.1 ID=NO07G02310.1|Name=NO07G02310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1359bp
ACAGGAATTCGACGTCCTGCCCCATCACTCCTTGCATAACGAGCACGCCT
TCATCCGTCACTACATCCATCAACTCTTTCTCCACAAACGAAATCATGAC
AACAGCCATAGGCATGATGGACGCCGGATACTTTGTTGGCCGGAAGGAAA
TCGTGGACTGGGTGAATGAAACGCTGCAGTTGAGCCTGAGCAAAGTGGAG
CAGACTGCCTCGGGTGCCGTGGCATGCCAGTTGCTTGACCGCATTTACCC
GGGCAAGGTCCCCCTTGGCAAGGTAAACTGGGATGCCAAGCTGGATTACG
AATTTTTAAGTAACTACAAGATACTTCAGAATGCCTTTACCAGGCTGAAG
ATCGATAAACATCTGCCGGTGGAAAAACTGGTTAGGGCCAAGTACCAAGA
TAATTTGGAGTTTATGCAGTGGTTCAAGCGCTTCTACGAGCTCAATAACC
CGGCGCTCGACTACGACCCCGTCGCCGCTCGCGCAGGGGGTAAGGGTGCT
GGAGGGGCTGCCCGTATCCTGCCGGCTGCGGGATCATCCTTTTCCAATAG
TACAAGGGTGGGGGGCACCCCGAGCAAGCCTGTGGCAGGCCGCTCCAACT
CCCGCAGCATTGGTAGCAGCGCCAGCACTAGTTATACTTCCGGCTGTGTG
GCTCGGGATAAGGAGAATGGTGGCAGCCGGACGATAAGCAATAAGCCCAA
GGTGGCTTCTGTGCCTTTGATGGACGAGGTGCTGGTGCAGAAAGCCGAGG
CGCTGCAACAGGAAAACGCAACCCTCCAAGCCACCATTGAGGGTTTGGAG
AAGGAGCGGGACTTCTACTTTGAGAAGCTGACGGTAGTGGAGGAAATGCT
GCAGGAGCGGCAAGCGGGAGCCGGAGACGATGTCATTCCTGAAGTGGCAG
AGCTGGTGGAACAGATTTTCAAAGTTCTCTACGCTACTGAGAGCACCACC
GCCCCTCCCGCCAGCGTTGTCAGCGTGGAGTCATCCGAGGCCGCGGCGGC
GGCTGTGGCGGCACCTTCTGCCGTCGTTTAAATGTTGGGACGCGAACGTA
ACAAAGGGAGGAAATGGTGAATGGGTTTTGGAGCCGACACTTTGGCAGCA
GCAGCGGAAGCAGGGGCAAGGGAACGAGAGGAAAGAAGAAGCTAATGTGC
AGGATGGAGGCTAAGAGACAGATAGTGTGTGGCACGCGAATTGACGGCAA
GATGGATGAAAAAGAGCACGGAACGGAGTGGGTATGCTGAATAGAACATA
GTATGAGGATCACGTATCGCCGGCGGGGGGACGGCAAGAACCCCATGGGA
ATAAAAGTAACAACCAAAACCGCAGAAAGCTGCGAGACAATATTTTAAAC
GGAGAACAA
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protein sequence of NO07G02310.1

>NO07G02310.1-protein ID=NO07G02310.1-protein|Name=NO07G02310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MTTAIGMMDAGYFVGRKEIVDWVNETLQLSLSKVEQTASGAVACQLLDRI
YPGKVPLGKVNWDAKLDYEFLSNYKILQNAFTRLKIDKHLPVEKLVRAKY
QDNLEFMQWFKRFYELNNPALDYDPVAARAGGKGAGGAARILPAAGSSFS
NSTRVGGTPSKPVAGRSNSRSIGSSASTSYTSGCVARDKENGGSRTISNK
PKVASVPLMDEVLVQKAEALQQENATLQATIEGLEKERDFYFEKLTVVEE
MLQERQAGAGDDVIPEVAELVEQIFKVLYATESTTAPPASVVSVESSEAA
AAAVAAPSAVV*
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mRNA from alignment at chr7:683649..685440-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02310.1 ID=NO07G02310.1|Name=NO07G02310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1792bp|location=Sequence derived from alignment at chr7:683649..685440- (Nannochloropsis oceanica)
ACAGGAATTCGACGTCCTGCCCCATCACTCCTTGCATAACGAGCACGCCT
TCATCCGTCACTACATCCATCAACTCTTTCTCCACAAACGAAATCATGAC
AACAGCCATAGGTATGCTTTCTCTCTCTGTTGTGCCTCGCTTTGCCTTGT
CATACCATTTTTTTTTCTGCATGTTTTGACGTGTTCTGTGAGACTGGTGC
TCCCTCCCTGGCTTGCCATTTTGTCGCATATCTCTGGAGTGTGTGGTGAG
CGTCTCAATATCTCATTTCAAATGTCAACGCCCATGCCTGTATATGTCAT
CGTCCCACTGCCTTCCTGGCCCATGATTTGAATCCTTATTCCACAGCGGC
CGTCGTGCCACTAGCATGCACCTTGTCTGCTTTCATCGCCCCCCTCCTCT
GATCTTTTCCCCTCTCCCCGCATGTGTATCATGTTTCCCAAGGCCATCCT
ACGGTGTCCCGCTCCCCAGTAATTTTCTTCTACTCTTCTCTCGTACCCCT
CTAATTTCTTCTCTCGTCATTCCATTCCGTTCATTCATCTACAGGCATGA
TGGACGCCGGATACTTTGTTGGCCGGAAGGAAATCGTGGACTGGGTGAAT
GAAACGCTGCAGTTGAGCCTGAGCAAAGTGGAGCAGACTGCCTCGGGTGC
CGTGGCATGCCAGTTGCTTGACCGCATTTACCCGGGCAAGGTCCCCCTTG
GCAAGGTAAACTGGGATGCCAAGCTGGATTACGAATTTTTAAGTAACTAC
AAGATACTTCAGAATGCCTTTACCAGGCTGAAGATCGATAAACATCTGCC
GGTGGAAAAACTGGTTAGGGCCAAGTACCAAGATAATTTGGAGTTTATGC
AGTGGTTCAAGCGCTTCTACGAGCTCAATAACCCGGCGCTCGACTACGAC
CCCGTCGCCGCTCGCGCAGGGGGTAAGGGTGCTGGAGGGGCTGCCCGTAT
CCTGCCGGCTGCGGGATCATCCTTTTCCAATAGTACAAGGGTGGGGGGCA
CCCCGAGCAAGCCTGTGGCAGGCCGCTCCAACTCCCGCAGCATTGGTAGC
AGCGCCAGCACTAGTTATACTTCCGGCTGTGTGGCTCGGGATAAGGAGAA
TGGTGGCAGCCGGACGATAAGCAATAAGCCCAAGGTGGCTTCTGTGCCTT
TGATGGACGAGGTGCTGGTGCAGAAAGCCGAGGCGCTGCAACAGGAAAAC
GCAACCCTCCAAGCCACCATTGAGGGTTTGGAGAAGGAGCGGGACTTCTA
CTTTGAGAAGCTGACGGTAGTGGAGGAAATGCTGCAGGAGCGGCAAGCGG
GAGCCGGAGACGATGTCATTCCTGAAGTGGCAGAGCTGGTGGAACAGATT
TTCAAAGTTCTCTACGCTACTGAGAGCACCACCGCCCCTCCCGCCAGCGT
TGTCAGCGTGGAGTCATCCGAGGCCGCGGCGGCGGCTGTGGCGGCACCTT
CTGCCGTCGTTTAAATGTTGGGACGCGAACGTAACAAAGGGAGGAAATGG
TGAATGGGTTTTGGAGCCGACACTTTGGCAGCAGCAGCGGAAGCAGGGGC
AAGGGAACGAGAGGAAAGAAGAAGCTAATGTGCAGGATGGAGGCTAAGAG
ACAGATAGTGTGTGGCACGCGAATTGACGGCAAGATGGATGAAAAAGAGC
ACGGAACGGAGTGGGTATGCTGAATAGAACATAGTATGAGGATCACGTAT
CGCCGGCGGGGGGACGGCAAGAACCCCATGGGAATAAAAGTAACAACCAA
AACCGCAGAAAGCTGCGAGACAATATTTTAAACGGAGAACAA
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Coding sequence (CDS) from alignment at chr7:683649..685440-

>NO07G02310.1 ID=NO07G02310.1|Name=NO07G02310.1|organism=Nannochloropsis oceanica|type=CDS|length=936bp|location=Sequence derived from alignment at chr7:683649..685440- (Nannochloropsis oceanica)
ATGACAACAGCCATAGGCATGATGGACGCCGGATACTTTGTTGGCCGGAA
GGAAATCGTGGACTGGGTGAATGAAACGCTGCAGTTGAGCCTGAGCAAAG
TGGAGCAGACTGCCTCGGGTGCCGTGGCATGCCAGTTGCTTGACCGCATT
TACCCGGGCAAGGTCCCCCTTGGCAAGGTAAACTGGGATGCCAAGCTGGA
TTACGAATTTTTAAGTAACTACAAGATACTTCAGAATGCCTTTACCAGGC
TGAAGATCGATAAACATCTGCCGGTGGAAAAACTGGTTAGGGCCAAGTAC
CAAGATAATTTGGAGTTTATGCAGTGGTTCAAGCGCTTCTACGAGCTCAA
TAACCCGGCGCTCGACTACGACCCCGTCGCCGCTCGCGCAGGGGGTAAGG
GTGCTGGAGGGGCTGCCCGTATCCTGCCGGCTGCGGGATCATCCTTTTCC
AATAGTACAAGGGTGGGGGGCACCCCGAGCAAGCCTGTGGCAGGCCGCTC
CAACTCCCGCAGCATTGGTAGCAGCGCCAGCACTAGTTATACTTCCGGCT
GTGTGGCTCGGGATAAGGAGAATGGTGGCAGCCGGACGATAAGCAATAAG
CCCAAGGTGGCTTCTGTGCCTTTGATGGACGAGGTGCTGGTGCAGAAAGC
CGAGGCGCTGCAACAGGAAAACGCAACCCTCCAAGCCACCATTGAGGGTT
TGGAGAAGGAGCGGGACTTCTACTTTGAGAAGCTGACGGTAGTGGAGGAA
ATGCTGCAGGAGCGGCAAGCGGGAGCCGGAGACGATGTCATTCCTGAAGT
GGCAGAGCTGGTGGAACAGATTTTCAAAGTTCTCTACGCTACTGAGAGCA
CCACCGCCCCTCCCGCCAGCGTTGTCAGCGTGGAGTCATCCGAGGCCGCG
GCGGCGGCTGTGGCGGCACCTTCTGCCGTCGTTTAA
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Synonyms
Publications