NO07G02150.1, NO07G02150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02150.1
Unique NameNO07G02150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1587
Alignment locationchr7:637690..639460 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:637690..639460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO07G02150.1 vs.
Match: EWM27211.1 (endoplasmic oxidoreductin-2 [Nannochloropsis gaditana])

HSP 1 Score: 836.6 bits (2160), Expect = 4.100e-239
Identity = 395/508 (77.76%), Postives = 436/508 (85.83%), Query Frame = 0 
Query:    1 MWWLVKPRLLVFCGVVLLIGQLCAQTEGGKRFTHLPMLDFFRARVCQTCDLDGFVGDCGCEFDTVNKATRQYFFPLLGDLAQRTFFRYFKVNLSKACPFWHEEMICSIRDCAVLECEAHEVPPVWIERDAEGRAIRECLGDSTTALSEMEKLLGTVDRKEAKAGVDAFAGWAEGDNAKVWIEQEEEDQGMNYINLLRNIERFTGYAGPSARRVWRSIYENCFELSPMELHAGGHCLEKRVFYRLIAGLQSSISTHLALDYYDSAQDRWCPNTALFVEKVGMHPERIHNLYFAYLFLLRAINMAGPELQAYDYDTGNPEDDEWVRGAVRGLVRASSNATTAEQCHRAFDESGMFQPRGLAGGSDAVAAEEAELHKLRHDFFVRFHNISRIMDCVGCEKCRLWGKLQVLGLGTAIKVVLGRPEDRTAEGRLSFQRNEVIALINTAHQLAKSVKAVDDFQKLEFDEIVQRWMWLAGLVLIVTGALLGLLLRRQGPKRSNRHHGECGKATNG 509
            MWW++KPRLL F G+ LL+GQL AQTEGGKR T L  L FFR+RVCQTCDL G VGDCGC+FDTVN+AT  +FFPLL DLAQRTFFRYFKVNL+K CPFWHE+M+CSIRDCAV+ECEAHE+PPVWIERDAEGRA+RECL +S TA   ME  LG VDRKEA  GVDAFAGW EGDNA+VWIEQEEEDQGM YINLLRN ERFTGYAGPSARR W ++YENCFELSP EL AGGHCLEKRVFYRLIAGLQSSISTHLAL+YYD AQD W PNTALFVEKVG HPERIHNLYF YLFLLRAIN AGPEL  YDYDTGN EDDE VR AV+ LVR SSN +TA+QCHRAFDESGMFQPRGL  G++A A EE ELHKLR DFFVRFHNISR+MDCVGCEKCRLWGKLQ+LGLGTAIK+VLGRPEDRT EG LSFQRNEVI+LINTAHQLAKSVKAV++FQKLEFD+I+Q WMW++GL  IV G  L + L RQ  ++ ++   + G  +NG
Sbjct:    1 MWWMLKPRLLFFWGIFLLVGQLYAQTEGGKRLTSLHALSFFRSRVCQTCDLVGSVGDCGCDFDTVNQATILHFFPLLTDLAQRTFFRYFKVNLNKDCPFWHEDMMCSIRDCAVVECEAHEIPPVWIERDAEGRAVRECLKESDTATDRMEMHLGAVDRKEAMVGVDAFAGWEEGDNARVWIEQEEEDQGMTYINLLRNPERFTGYAGPSARRAWNAVYENCFELSPGELEAGGHCLEKRVFYRLIAGLQSSISTHLALEYYDKAQDCWFPNTALFVEKVGKHPERIHNLYFTYLFLLRAINKAGPELLLYDYDTGNSEDDECVRSAVQNLVRTSSNTSTADQCHRAFDESGMFQPRGLTDGAEAAAEEERELHKLRQDFFVRFHNISRVMDCVGCEKCRLWGKLQILGLGTAIKIVLGRPEDRTLEGSLSFQRNEVISLINTAHQLAKSVKAVENFQKLEFDDILQWWMWMSGLAFIVVGIFLRVCLHRQEMEKISKEKKQ-GDRSNG 507
The following BLAST results are available for this feature:
BLAST of NO07G02150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27211.14.100e-23977.76endoplasmic oxidoreductin-2 [Nannochloropsis gadit... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02150NO07G02150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02150.1NO07G02150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02150.1.cds1NO07G02150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02150.1.cds2NO07G02150.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02150.1 ID=NO07G02150.1|Name=NO07G02150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1587bp
ATGTGGTGGCTCGTAAAGCCTAGGCTGCTCGTATTCTGCGGCGTCGTCCT
CCTGATCGGCCAGCTATGCGCTCAGACAGAGGGCGGGAAGCGTTTCACAC
ACCTACCAATGCTGGATTTCTTCCGTGCCCGTGTTTGCCAGACTTGCGAC
CTAGACGGGTTTGTGGGGGACTGCGGCTGCGAGTTTGACACGGTTAACAA
AGCCACGCGTCAGTACTTTTTTCCGCTGTTGGGGGATCTGGCACAGCGCA
CCTTCTTTCGGTACTTCAAAGTGAACCTGAGCAAGGCCTGCCCCTTTTGG
CACGAGGAGATGATATGCTCCATCCGGGACTGCGCCGTGCTGGAGTGCGA
AGCCCATGAGGTCCCGCCCGTCTGGATCGAGCGAGATGCCGAAGGCCGGG
CGATACGGGAATGTCTCGGGGACTCCACGACGGCCTTAAGCGAGATGGAA
AAGCTTCTGGGCACGGTGGACCGCAAGGAGGCCAAGGCGGGTGTCGATGC
CTTCGCGGGCTGGGCGGAGGGGGACAACGCCAAAGTTTGGATCGAGCAGG
AGGAGGAAGACCAGGGTATGAATTACATCAACCTCCTGCGCAACATCGAG
CGCTTCACGGGCTATGCAGGGCCCTCGGCTCGTCGAGTCTGGCGCTCTAT
TTACGAGAATTGCTTCGAGCTGTCCCCTATGGAGCTGCACGCGGGCGGGC
ACTGCCTGGAGAAGCGCGTCTTCTACCGCCTGATCGCCGGTCTGCAATCA
TCCATCTCCACACATTTAGCCTTGGACTATTACGACTCGGCCCAGGACCG
GTGGTGCCCCAACACGGCGCTGTTCGTGGAGAAGGTGGGCATGCATCCCG
AGCGCATCCACAACCTGTACTTCGCCTACCTGTTCCTGCTGCGCGCCATC
AACATGGCCGGACCCGAGCTTCAGGCCTACGACTACGACACGGGGAACCC
CGAGGATGATGAATGGGTACGCGGTGCAGTCCGGGGCCTGGTGCGTGCTT
CTTCCAACGCCACCACAGCTGAGCAGTGCCACCGCGCATTTGACGAGAGC
GGCATGTTCCAGCCGCGCGGGCTGGCGGGCGGATCCGACGCGGTAGCAGC
AGAGGAAGCCGAGCTGCACAAGCTGCGCCATGATTTTTTCGTGCGCTTCC
ACAACATCTCACGCATCATGGACTGCGTCGGGTGCGAGAAATGCCGGCTC
TGGGGCAAGCTGCAGGTTCTGGGCCTGGGCACGGCCATCAAGGTGGTGCT
GGGACGGCCCGAGGACCGGACGGCGGAAGGCCGCCTGTCATTTCAACGCA
ACGAGGTCATTGCCCTTATCAACACGGCCCACCAGCTGGCCAAGAGTGTC
AAGGCCGTGGACGACTTCCAGAAGCTGGAGTTCGACGAGATTGTGCAGCG
CTGGATGTGGCTGGCCGGCCTGGTGCTCATTGTCACTGGTGCTTTGCTAG
GCCTGCTTCTTCGACGGCAAGGGCCAAAAAGAAGCAATCGGCATCACGGT
GAGTGCGGGAAGGCAACAAATGGAATGGATTCCGCTGCGCAAGGCGTGCT
ACCTATTGATTATGAACGTACGAAGAAGGCAAATTAG
back to top

protein sequence of NO07G02150.1

>NO07G02150.1-protein ID=NO07G02150.1-protein|Name=NO07G02150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=529bp
MWWLVKPRLLVFCGVVLLIGQLCAQTEGGKRFTHLPMLDFFRARVCQTCD
LDGFVGDCGCEFDTVNKATRQYFFPLLGDLAQRTFFRYFKVNLSKACPFW
HEEMICSIRDCAVLECEAHEVPPVWIERDAEGRAIRECLGDSTTALSEME
KLLGTVDRKEAKAGVDAFAGWAEGDNAKVWIEQEEEDQGMNYINLLRNIE
RFTGYAGPSARRVWRSIYENCFELSPMELHAGGHCLEKRVFYRLIAGLQS
SISTHLALDYYDSAQDRWCPNTALFVEKVGMHPERIHNLYFAYLFLLRAI
NMAGPELQAYDYDTGNPEDDEWVRGAVRGLVRASSNATTAEQCHRAFDES
GMFQPRGLAGGSDAVAAEEAELHKLRHDFFVRFHNISRIMDCVGCEKCRL
WGKLQVLGLGTAIKVVLGRPEDRTAEGRLSFQRNEVIALINTAHQLAKSV
KAVDDFQKLEFDEIVQRWMWLAGLVLIVTGALLGLLLRRQGPKRSNRHHG
ECGKATNGMDSAAQGVLPIDYERTKKAN*
back to top

mRNA from alignment at chr7:637690..639460-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02150.1 ID=NO07G02150.1|Name=NO07G02150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1771bp|location=Sequence derived from alignment at chr7:637690..639460- (Nannochloropsis oceanica)
ATGTGGTGGCTCGTAAAGCCTAGGCTGCTCGTATTCTGCGGCGTCGTCCT
CCTGATCGGCCAGCTATGCGCTCAGACAGAGGTAAGAAACAGACGGGACG
CGATGGGTTGGGTGGGTGGGTAGGGATCAACTTACGGTCTCAGATACAGT
ATGTGATAAACCACGCGACATGCCCCTGGTGTGCGCTTCTCACATTTATT
CATGACATTGCGTACTCCAACTCACATACACCCCTCTCGCTCTCGCTATA
TCTCTCCCATCGCAGGGCGGGAAGCGTTTCACACACCTACCAATGCTGGA
TTTCTTCCGTGCCCGTGTTTGCCAGACTTGCGACCTAGACGGGTTTGTGG
GGGACTGCGGCTGCGAGTTTGACACGGTTAACAAAGCCACGCGTCAGTAC
TTTTTTCCGCTGTTGGGGGATCTGGCACAGCGCACCTTCTTTCGGTACTT
CAAAGTGAACCTGAGCAAGGCCTGCCCCTTTTGGCACGAGGAGATGATAT
GCTCCATCCGGGACTGCGCCGTGCTGGAGTGCGAAGCCCATGAGGTCCCG
CCCGTCTGGATCGAGCGAGATGCCGAAGGCCGGGCGATACGGGAATGTCT
CGGGGACTCCACGACGGCCTTAAGCGAGATGGAAAAGCTTCTGGGCACGG
TGGACCGCAAGGAGGCCAAGGCGGGTGTCGATGCCTTCGCGGGCTGGGCG
GAGGGGGACAACGCCAAAGTTTGGATCGAGCAGGAGGAGGAAGACCAGGG
TATGAATTACATCAACCTCCTGCGCAACATCGAGCGCTTCACGGGCTATG
CAGGGCCCTCGGCTCGTCGAGTCTGGCGCTCTATTTACGAGAATTGCTTC
GAGCTGTCCCCTATGGAGCTGCACGCGGGCGGGCACTGCCTGGAGAAGCG
CGTCTTCTACCGCCTGATCGCCGGTCTGCAATCATCCATCTCCACACATT
TAGCCTTGGACTATTACGACTCGGCCCAGGACCGGTGGTGCCCCAACACG
GCGCTGTTCGTGGAGAAGGTGGGCATGCATCCCGAGCGCATCCACAACCT
GTACTTCGCCTACCTGTTCCTGCTGCGCGCCATCAACATGGCCGGACCCG
AGCTTCAGGCCTACGACTACGACACGGGGAACCCCGAGGATGATGAATGG
GTACGCGGTGCAGTCCGGGGCCTGGTGCGTGCTTCTTCCAACGCCACCAC
AGCTGAGCAGTGCCACCGCGCATTTGACGAGAGCGGCATGTTCCAGCCGC
GCGGGCTGGCGGGCGGATCCGACGCGGTAGCAGCAGAGGAAGCCGAGCTG
CACAAGCTGCGCCATGATTTTTTCGTGCGCTTCCACAACATCTCACGCAT
CATGGACTGCGTCGGGTGCGAGAAATGCCGGCTCTGGGGCAAGCTGCAGG
TTCTGGGCCTGGGCACGGCCATCAAGGTGGTGCTGGGACGGCCCGAGGAC
CGGACGGCGGAAGGCCGCCTGTCATTTCAACGCAACGAGGTCATTGCCCT
TATCAACACGGCCCACCAGCTGGCCAAGAGTGTCAAGGCCGTGGACGACT
TCCAGAAGCTGGAGTTCGACGAGATTGTGCAGCGCTGGATGTGGCTGGCC
GGCCTGGTGCTCATTGTCACTGGTGCTTTGCTAGGCCTGCTTCTTCGACG
GCAAGGGCCAAAAAGAAGCAATCGGCATCACGGTGAGTGCGGGAAGGCAA
CAAATGGAATGGATTCCGCTGCGCAAGGCGTGCTACCTATTGATTATGAA
CGTACGAAGAAGGCAAATTAG
back to top

Coding sequence (CDS) from alignment at chr7:637690..639460-

>NO07G02150.1 ID=NO07G02150.1|Name=NO07G02150.1|organism=Nannochloropsis oceanica|type=CDS|length=1587bp|location=Sequence derived from alignment at chr7:637690..639460- (Nannochloropsis oceanica)
ATGTGGTGGCTCGTAAAGCCTAGGCTGCTCGTATTCTGCGGCGTCGTCCT
CCTGATCGGCCAGCTATGCGCTCAGACAGAGGGCGGGAAGCGTTTCACAC
ACCTACCAATGCTGGATTTCTTCCGTGCCCGTGTTTGCCAGACTTGCGAC
CTAGACGGGTTTGTGGGGGACTGCGGCTGCGAGTTTGACACGGTTAACAA
AGCCACGCGTCAGTACTTTTTTCCGCTGTTGGGGGATCTGGCACAGCGCA
CCTTCTTTCGGTACTTCAAAGTGAACCTGAGCAAGGCCTGCCCCTTTTGG
CACGAGGAGATGATATGCTCCATCCGGGACTGCGCCGTGCTGGAGTGCGA
AGCCCATGAGGTCCCGCCCGTCTGGATCGAGCGAGATGCCGAAGGCCGGG
CGATACGGGAATGTCTCGGGGACTCCACGACGGCCTTAAGCGAGATGGAA
AAGCTTCTGGGCACGGTGGACCGCAAGGAGGCCAAGGCGGGTGTCGATGC
CTTCGCGGGCTGGGCGGAGGGGGACAACGCCAAAGTTTGGATCGAGCAGG
AGGAGGAAGACCAGGGTATGAATTACATCAACCTCCTGCGCAACATCGAG
CGCTTCACGGGCTATGCAGGGCCCTCGGCTCGTCGAGTCTGGCGCTCTAT
TTACGAGAATTGCTTCGAGCTGTCCCCTATGGAGCTGCACGCGGGCGGGC
ACTGCCTGGAGAAGCGCGTCTTCTACCGCCTGATCGCCGGTCTGCAATCA
TCCATCTCCACACATTTAGCCTTGGACTATTACGACTCGGCCCAGGACCG
GTGGTGCCCCAACACGGCGCTGTTCGTGGAGAAGGTGGGCATGCATCCCG
AGCGCATCCACAACCTGTACTTCGCCTACCTGTTCCTGCTGCGCGCCATC
AACATGGCCGGACCCGAGCTTCAGGCCTACGACTACGACACGGGGAACCC
CGAGGATGATGAATGGGTACGCGGTGCAGTCCGGGGCCTGGTGCGTGCTT
CTTCCAACGCCACCACAGCTGAGCAGTGCCACCGCGCATTTGACGAGAGC
GGCATGTTCCAGCCGCGCGGGCTGGCGGGCGGATCCGACGCGGTAGCAGC
AGAGGAAGCCGAGCTGCACAAGCTGCGCCATGATTTTTTCGTGCGCTTCC
ACAACATCTCACGCATCATGGACTGCGTCGGGTGCGAGAAATGCCGGCTC
TGGGGCAAGCTGCAGGTTCTGGGCCTGGGCACGGCCATCAAGGTGGTGCT
GGGACGGCCCGAGGACCGGACGGCGGAAGGCCGCCTGTCATTTCAACGCA
ACGAGGTCATTGCCCTTATCAACACGGCCCACCAGCTGGCCAAGAGTGTC
AAGGCCGTGGACGACTTCCAGAAGCTGGAGTTCGACGAGATTGTGCAGCG
CTGGATGTGGCTGGCCGGCCTGGTGCTCATTGTCACTGGTGCTTTGCTAG
GCCTGCTTCTTCGACGGCAAGGGCCAAAAAGAAGCAATCGGCATCACGGT
GAGTGCGGGAAGGCAACAAATGGAATGGATTCCGCTGCGCAAGGCGTGCT
ACCTATTGATTATGAACGTACGAAGAAGGCAAATTAG
back to top
Synonyms
Publications