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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:518681..520571 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G01720.1 vs.
Match: BAU20969.1 (sulfoquinovosyldiacylglycerol 2 [Nannochloropsis sp. NIES-2145]) HSP 1 Score: 969.5 bits (2505), Expect = 3.900e-279 Identity = 481/481 (100.00%), Postives = 481/481 (100.00%), Query Frame = 0
Query: 29 MLIVVVCLLSRPCHAFTPGVSRCPHTSKTLNVPGSTRLTPLLTALDDDEIAVVTQADAAVNAMFKKPLRVGLLVEPTPFTHVSGYANRFKEMLKHLHRTGDQVEICTTDDVPEAPKKFLDYQIQYTPGFRFPLYDHICLTFDYKMIAYNFLKLFRPHIIHVSTPGCLCFAAAIYARVLRIPLLFSYHTHLPIYARDYMGFVPGIVGLTRFVIRVVHNWADLTLVTSPQLKDELQGFGVKRVAVWKKGVDTDRFHPKFRSAAMRDRLTDGHPEAPLLVYVGRLGAEKKLKMLKGVMERIPAARLALVGGGPAEADLREHFKGTNTVFTGVLHGEELSQAFASADVFLMPSDSETLGFVVLESMASGVPVIGARAGGIPNVIAHGKTGFLAPVGDEEAFAVRALQLLGDKSLMVKMKEAGRAEAERLDWACAMEHLRNIHYKRAVMIHRRRTLSAFLAWAGTLKQRTVKSVKQSMEGMFATAT 510
MLIVVVCLLSRPCHAFTPGVSRCPHTSKTLNVPGSTRLTPLLTALDDDEIAVVTQADAAVNAMFKKPLRVGLLVEPTPFTHVSGYANRFKEMLKHLHRTGDQVEICTTDDVPEAPKKFLDYQIQYTPGFRFPLYDHICLTFDYKMIAYNFLKLFRPHIIHVSTPGCLCFAAAIYARVLRIPLLFSYHTHLPIYARDYMGFVPGIVGLTRFVIRVVHNWADLTLVTSPQLKDELQGFGVKRVAVWKKGVDTDRFHPKFRSAAMRDRLTDGHPEAPLLVYVGRLGAEKKLKMLKGVMERIPAARLALVGGGPAEADLREHFKGTNTVFTGVLHGEELSQAFASADVFLMPSDSETLGFVVLESMASGVPVIGARAGGIPNVIAHGKTGFLAPVGDEEAFAVRALQLLGDKSLMVKMKEAGRAEAERLDWACAMEHLRNIHYKRAVMIHRRRTLSAFLAWAGTLKQRTVKSVKQSMEGMFATAT
Sbjct: 1 MLIVVVCLLSRPCHAFTPGVSRCPHTSKTLNVPGSTRLTPLLTALDDDEIAVVTQADAAVNAMFKKPLRVGLLVEPTPFTHVSGYANRFKEMLKHLHRTGDQVEICTTDDVPEAPKKFLDYQIQYTPGFRFPLYDHICLTFDYKMIAYNFLKLFRPHIIHVSTPGCLCFAAAIYARVLRIPLLFSYHTHLPIYARDYMGFVPGIVGLTRFVIRVVHNWADLTLVTSPQLKDELQGFGVKRVAVWKKGVDTDRFHPKFRSAAMRDRLTDGHPEAPLLVYVGRLGAEKKLKMLKGVMERIPAARLALVGGGPAEADLREHFKGTNTVFTGVLHGEELSQAFASADVFLMPSDSETLGFVVLESMASGVPVIGARAGGIPNVIAHGKTGFLAPVGDEEAFAVRALQLLGDKSLMVKMKEAGRAEAERLDWACAMEHLRNIHYKRAVMIHRRRTLSAFLAWAGTLKQRTVKSVKQSMEGMFATAT 481
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G01720.1 ID=NO07G01720.1|Name=NO07G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1530bp ATGGTGTCGTCCACAGGTTGTGGATGTCGCATGGGTGAAAATGACCAGGC CGCGACCtccaccgcttccacttggacgccgatcatgttgatagtcgtcg tttgccttctatcgcgtccgtgtcacgcgtttacgcccggcgtcagcaga tgtccccacaccagcaagacgctcaatgtgcctggaagcacccgcctgac tcccttgcttactgctctggacgacgacgaaatcgctgttgtgacccagg cggacgctgccgtgaatgccatgtttaagaagccactgcgtgtggggctg ttggtggagccgacgCCCTTCACGCACGTAAGCGGCTACGCGAATCGGTT CAAGGAGATGCTCAAGCACCTGCACCGCACGGGGGACCAAGTGGAGATCT GTACAACGGATGACGTCCCTGAAGCCCCCAAGAAGTTTCTTGATTACCAA ATTCAGTACACCCCTGGCTTCCGTTTTCCGCTCTACGATCACATTTGCCT AACATTTGACTATAAAATGATCGCGTACAATTTCCTCAAGCTCTTTCGCC CACATATCATCCACGTCTCCACCCCTGGGTGTCTCTGTTTTGCTGCAGCA ATCTACGCAAGGGTCCTGCGGATTCCCTTGCTCTTTTCGTATCACACCCA CCTGCCCATTTACGCCCGAGACTACATGGGCTTTGTCCCTGGTATCGTCG GCCTGACAAGATTCGTCATTCGTGTGGTGCACAACTGGGCGGACTTAACG CTGGTGACCAGCCCACAGCTCAAGGACGAATTGCAGGGTTTTGGCGTGAA GCGTGTGGCAGTTTGGAAGAAAGGGGTCGACACGGACCGTTTCCATCCGA AGTTTCGGAGTGCGGCCATGCGGGATCGCTTGACGGATGGACATCCAGAG GCGCCACTGTTAGTGTATGTGGGACGGTTGGGTGCCGAGAAGAAGTTGAA GATGCTCAAAGGAGTGATGGAGAGGATTCCTGCGGCGAGGCTTGCGCTGG TGGGTGGAGGACCAGCCGAGGCTGATCTGCGAGAGCATTTCAAGGGGACA AATACTGTGTTTACGGGTGTGTTACACGGAGAGGAGTTAAGCCAGGCGTT TGCCTCGGCGGACGTATTTTTGATGCCTTCGGATTCGGAGACGCTGGGCT TCGTTGTGTTGGAGTCGATGGCGAGTGGGGTGCCTGTGATAGGGGCAAGA GCGGGGGGGATCCCTAATGTGATTGCACATGGGAAGACGGGATTTTTGGC CCCAGTGGGCGACGAGGAGGCGTTTGCGGTACGGGCACTGCAGTTGTTGG GGGATAAATCATTGATGGTGAAGATGAAGGAGGCGGGGAGGGCGGAGGCG GAGAGATTGGATTGGGCGTGCGCGATGGAACATTTGAGAAATATACATTA CAAGCGTGCGGTGATGATTCACAGGCGAAGGACATTGAGTGCGTTTTTGG CATGGGCGGGGACGTTGAAGCAGCGAACAGTGAAGAGCGTGAAGCAGAGT ATGGAGGGTATGTTCGCGACAGCTACGTAA back to topprotein sequence of NO07G01720.1 >NO07G01720.1-protein ID=NO07G01720.1-protein|Name=NO07G01720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=510bp MVSSTGCGCRMGENDQAATSTASTWTPIMLIVVVCLLSRPCHAFTPGVSR CPHTSKTLNVPGSTRLTPLLTALDDDEIAVVTQADAAVNAMFKKPLRVGL LVEPTPFTHVSGYANRFKEMLKHLHRTGDQVEICTTDDVPEAPKKFLDYQ IQYTPGFRFPLYDHICLTFDYKMIAYNFLKLFRPHIIHVSTPGCLCFAAA IYARVLRIPLLFSYHTHLPIYARDYMGFVPGIVGLTRFVIRVVHNWADLT LVTSPQLKDELQGFGVKRVAVWKKGVDTDRFHPKFRSAAMRDRLTDGHPE APLLVYVGRLGAEKKLKMLKGVMERIPAARLALVGGGPAEADLREHFKGT NTVFTGVLHGEELSQAFASADVFLMPSDSETLGFVVLESMASGVPVIGAR AGGIPNVIAHGKTGFLAPVGDEEAFAVRALQLLGDKSLMVKMKEAGRAEA ERLDWACAMEHLRNIHYKRAVMIHRRRTLSAFLAWAGTLKQRTVKSVKQS MEGMFATAT* back to topmRNA from alignment at chr7:518681..520571- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G01720.1 ID=NO07G01720.1|Name=NO07G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1891bp|location=Sequence derived from alignment at chr7:518681..520571- (Nannochloropsis oceanica) ATGGTGTCGTCCACAGGTTGTGGATGTCGCATGGGTGAAAATGACCAGGC
CGCGACCTCCACCGCTTCCACTTGGACGCCGATCATGTTGATAGTCGTCG
TTTGCCTTCTATCGCGTCCGTGTCACGCGTTTACGCCCGGCGTCAGCAGA
TGTCCCCACACCAGCAAGACGCTCAATGTGCCTGGAAGCACCCGGTACGT
GGCGCGATGGCTCGTAAAAGCCGATCTTTGTAGCTTTTAAATCAGAGATT
CCAACAAAGGAGTCCCCCCCCTGCCTGATCCTATGCCCTTTCCCTTCCTC
TCCCCCCCCCTTCTTAATAGCCTGACTCCCTTGCTTACTGCTCTGGACGA
CGACGAAATCGCTGTTGTGACCCAGGCGGACGCTGCCGTGAATGCCATGT
TTAAGAAGCCACTGCGTGTGGGGCTGTTGGTGGAGCCGACGGTAAGTCTT
CTGGCTACGAATCTGCGGATTCCTTGTCCGTTTTCGCCCTCCCTCCCTTT
CTGGAGTTGCCGTGCGGTCAAGCTTACCACAATGCGCCACTACGTATCTT
ACACTTACGTCCGCGATGTTTTGACGGTGGTTTCTGCCTATGTCAAACTA
GAACCATGCCGTGCCTCTCTTGACCATGTATGTCACAACCTCTCACCACT
TCCTTCCATCCCTCCCTCCCCGCCAGCCCTTCACGCACGTAAGCGGCTAC
GCGAATCGGTTCAAGGAGATGCTCAAGCACCTGCACCGCACGGGGGACCA
AGTGGAGATCTGTACAACGGATGACGTCCCTGAAGCCCCCAAGAAGTTTC
TTGATTACCAAATTCAGTACACCCCTGGCTTCCGTTTTCCGCTCTACGAT
CACATTTGCCTAACATTTGACTATAAAATGATCGCGTACAATTTCCTCAA
GCTCTTTCGCCCACATATCATCCACGTCTCCACCCCTGGGTGTCTCTGTT
TTGCTGCAGCAATCTACGCAAGGGTCCTGCGGATTCCCTTGCTCTTTTCG
TATCACACCCACCTGCCCATTTACGCCCGAGACTACATGGGCTTTGTCCC
TGGTATCGTCGGCCTGACAAGATTCGTCATTCGTGTGGTGCACAACTGGG
CGGACTTAACGCTGGTGACCAGCCCACAGCTCAAGGACGAATTGCAGGGT
TTTGGCGTGAAGCGTGTGGCAGTTTGGAAGAAAGGGGTCGACACGGACCG
TTTCCATCCGAAGTTTCGGAGTGCGGCCATGCGGGATCGCTTGACGGATG
GACATCCAGAGGCGCCACTGTTAGTGTATGTGGGACGGTTGGGTGCCGAG
AAGAAGTTGAAGATGCTCAAAGGAGTGATGGAGAGGATTCCTGCGGCGAG
GCTTGCGCTGGTGGGTGGAGGACCAGCCGAGGCTGATCTGCGAGAGCATT
TCAAGGGGACAAATACTGTGTTTACGGGTGTGTTACACGGAGAGGAGTTA
AGCCAGGCGTTTGCCTCGGCGGACGTATTTTTGATGCCTTCGGATTCGGA
GACGCTGGGCTTCGTTGTGTTGGAGTCGATGGCGAGTGGGGTGCCTGTGA
TAGGGGCAAGAGCGGGGGGGATCCCTAATGTGATTGCACATGGGAAGACG
GGATTTTTGGCCCCAGTGGGCGACGAGGAGGCGTTTGCGGTACGGGCACT
GCAGTTGTTGGGGGATAAATCATTGATGGTGAAGATGAAGGAGGCGGGGA
GGGCGGAGGCGGAGAGATTGGATTGGGCGTGCGCGATGGAACATTTGAGA
AATATACATTACAAGCGTGCGGTGATGATTCACAGGCGAAGGACATTGAG
TGCGTTTTTGGCATGGGCGGGGACGTTGAAGCAGCGAACAGTGAAGAGCG
TGAAGCAGAGTATGGAGGGTATGTTCGCGACAGCTACGTAA back to topCoding sequence (CDS) from alignment at chr7:518681..520571- >NO07G01720.1 ID=NO07G01720.1|Name=NO07G01720.1|organism=Nannochloropsis oceanica|type=CDS|length=1530bp|location=Sequence derived from alignment at chr7:518681..520571- (Nannochloropsis oceanica) ATGGTGTCGTCCACAGGTTGTGGATGTCGCATGGGTGAAAATGACCAGGC CGCGACCTCCACCGCTTCCACTTGGACGCCGATCATGTTGATAGTCGTCG TTTGCCTTCTATCGCGTCCGTGTCACGCGTTTACGCCCGGCGTCAGCAGA TGTCCCCACACCAGCAAGACGCTCAATGTGCCTGGAAGCACCCGCCTGAC TCCCTTGCTTACTGCTCTGGACGACGACGAAATCGCTGTTGTGACCCAGG CGGACGCTGCCGTGAATGCCATGTTTAAGAAGCCACTGCGTGTGGGGCTG TTGGTGGAGCCGACGCCCTTCACGCACGTAAGCGGCTACGCGAATCGGTT CAAGGAGATGCTCAAGCACCTGCACCGCACGGGGGACCAAGTGGAGATCT GTACAACGGATGACGTCCCTGAAGCCCCCAAGAAGTTTCTTGATTACCAA ATTCAGTACACCCCTGGCTTCCGTTTTCCGCTCTACGATCACATTTGCCT AACATTTGACTATAAAATGATCGCGTACAATTTCCTCAAGCTCTTTCGCC CACATATCATCCACGTCTCCACCCCTGGGTGTCTCTGTTTTGCTGCAGCA ATCTACGCAAGGGTCCTGCGGATTCCCTTGCTCTTTTCGTATCACACCCA CCTGCCCATTTACGCCCGAGACTACATGGGCTTTGTCCCTGGTATCGTCG GCCTGACAAGATTCGTCATTCGTGTGGTGCACAACTGGGCGGACTTAACG CTGGTGACCAGCCCACAGCTCAAGGACGAATTGCAGGGTTTTGGCGTGAA GCGTGTGGCAGTTTGGAAGAAAGGGGTCGACACGGACCGTTTCCATCCGA AGTTTCGGAGTGCGGCCATGCGGGATCGCTTGACGGATGGACATCCAGAG GCGCCACTGTTAGTGTATGTGGGACGGTTGGGTGCCGAGAAGAAGTTGAA GATGCTCAAAGGAGTGATGGAGAGGATTCCTGCGGCGAGGCTTGCGCTGG TGGGTGGAGGACCAGCCGAGGCTGATCTGCGAGAGCATTTCAAGGGGACA AATACTGTGTTTACGGGTGTGTTACACGGAGAGGAGTTAAGCCAGGCGTT TGCCTCGGCGGACGTATTTTTGATGCCTTCGGATTCGGAGACGCTGGGCT TCGTTGTGTTGGAGTCGATGGCGAGTGGGGTGCCTGTGATAGGGGCAAGA GCGGGGGGGATCCCTAATGTGATTGCACATGGGAAGACGGGATTTTTGGC CCCAGTGGGCGACGAGGAGGCGTTTGCGGTACGGGCACTGCAGTTGTTGG GGGATAAATCATTGATGGTGAAGATGAAGGAGGCGGGGAGGGCGGAGGCG GAGAGATTGGATTGGGCGTGCGCGATGGAACATTTGAGAAATATACATTA CAAGCGTGCGGTGATGATTCACAGGCGAAGGACATTGAGTGCGTTTTTGG CATGGGCGGGGACGTTGAAGCAGCGAACAGTGAAGAGCGTGAAGCAGAGT ATGGAGGGTATGTTCGCGACAGCTACGTAA back to top
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