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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:506118..509180 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G01670.2 vs.
Match: EWM27180.1 (uracil-dna glycosylase superfamily [Nannochloropsis gaditana]) HSP 1 Score: 309.7 bits (792), Expect = 1.100e-80 Identity = 166/270 (61.48%), Postives = 186/270 (68.89%), Query Frame = 0
Query: 40 AFTMVSVKRRKAPVASALIAGMHKKAPATAAFVVRTTATFAQSSGTDSGTSSSTSISTTTSTSSCKSSSASGGGLLEKFGSPEIPLRLILVGHNPSAAAWRDGHYYSNPSNRMWRLLSGAGIIPANYTALDDDKCPATCGIGFTDLGHGIPGTDSSQFRPKVLHMWRESLYQRLRGHSDRAGAPPKIVAFTGKRQFKELFYDSPAYKKKGLISYGLQTMRPEGFPFTVEETQLFVLTSSSGAAAMSNEAREAPYKELAVLLQQFPWGAPP 310
AF MV V RRK+ +A T A R A + S S T + +C GGL EK+G PE PLRL+LVGHNPSAAAWRDGHYYSNPSNRMW LL IIP YTA DDD+CP+TCGIGFTDLG+G PGTDSS F+ VLH WR SLYQRL H+ RAGAPPKIVAFTGKRQF+ELF+DS AYK ISYGLQ+ RP+GFPF +ET+LFVLTSSSGAAAMSN ARE PY+ELA LL+Q PW PP
Sbjct: 151 AFIMVGVARRKS------------QALTTTALAFRERRGLA---------TISLHKSKTPAHENC-------GGLREKYGDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRAGAPPKIVAFTGKRQFRELFFDSKAYKSIS-ISYGLQSARPDGFPFNADETKLFVLTSSSGAAAMSNAAREMPYQELAELLKQIPWEVPP 391
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G01670.2 ID=NO07G01670.2|Name=NO07G01670.2|organism=Nannochloropsis oceanica|type=mRNA|length=2923bp CAAAGCACCTCCAATGGTGGCTTTCCTCCGTTCTTGACGCCCTGGGTACC TTGCGTCGTGTTCGGCCCATGTTTCTTGTTTGTCTCTTGACATAAGCCAT CCCTTCCCCCATCTTCCAGTGTAAGATATGACCACCCGTGGAAGGCAAGG CGGACAAAGTATGGTCATCTCATGAAGCTCTTGCTGGGTGGTCACCGTGA TACGTCATCAATGGGTTCATGGTGGGGAGAGACAGGCAGGCAGTAGGAAG AGGAGAAGTAGGAGGAGGCCACGTGCGGAAATAAGCATGATCTACTTTGG ATCGGTCATTTGAGTGAATATTGTACTAAACGTTGAAGCCCAAGGGGTAA TACCGCACAGAAAGCTACAAAAACTGGTGCTTGTCGAGCAAATGCGTGTA CTTTGGCATGCAAGCAACCACACACAGACAAAGCAGTTTTCAAGCACTTT TTTAGATAAATTTACCATTTTTTCCAACAAAATCAAAAACAAATGTGGGT AACAGTTGCTTGCTTTTTCGGTATTCGAATGATACTTCCAACCAGTCTTT TATCGCCACCATCGGGTACGTCTTTTGGGAGCCCGTACATATGCCACCTG GAGCATTCTTGACAAACGGAAGAGGCAGCATGCACGCATGTCAATGAAGT TGTCGCTTTGAAATATACCCCTCTTCCTTGCGCTTGCATTTTTTATTCCT ACCCAAACACACAGCATCGACTTCAAGATAAAATCCCCTCCTCCTGGGTG ACAAGAGACCCAAGCTCCAAATCTGGGACACGAACCCTAACCCTAACAGA GGAAAAGAGTCCGTTTCGGAGGTTCGTTTTTGTTTCTTTTTGGAGACGTC AACCACTTCCGGGGGCAAACCGTCCATAAAATTGTTATCTATTTGCCTTC CCCGGTATTTGCCCATCGCGCTCTCGAGAGCGAGAGTAGGAGACCCCACC AACATCACCATGATGATCACCCACCCTCCTCTGCACGGCCCGCCACCTCC CACATTCACCACACCCAATGTGGTCTGTAAGAAAGTGTTCGTGTACATGC AATCACCACAGCCATCACCACAGCAACCCCAAGAACTGATGGAAGTATAG AAGCCGGGCGGGTTCACGGAGTTTAAGTGCTCCGTGGGGTGGGCTTATTT TGGTGCTCACATTAAGATAAAAAAAATGGTATAATCCATAGGCCGCGCAT CCTCGTTATCGTCCTGCGCCGGCCTGTCTGCTGAGAGGTATACCATCTCT TCTCCGGGGAAAGAATGGACGGCGTAGTCATTCGAGGCGTCGACGTCCTT ATTCTTGGGGTTGAGGATGGTGCGATCAATGAGAGTTTTCTTCGTTGTAT TGCGCGCGTTATTGAAGTCCCCGTAGACGTGGTCGAGGAGCCTAATGGGG TCGTAGTTCAACTCTGACGGAGGGTGCATGAAGGGGGGCAGGACGAACTC CAGCTGGGGTGGAGGGAAAGGCGGGGTGGAATGGAGGGTGCCTACTGTCG GAGTGGGTGGGGTTGCCCGTCCTTCCCCTACCGCGAGGAGGAGGTCCGCC CGCATACCATTGGAGAAGATCCTAAGATCCTGGCCCGCGTCGTGCGCCGC ACGGATACGCACGTTTTCCTCCAGGGTAACGACGCGGACACGTTGCCAGA GAGGGCTACAAATTGGGGAAGCGCGCACGGTAGCACTTTGGTCGTCGTCT CGGACCACTAGGAGGATTTTACGTCGATCCCCCGGGGGTTATTCGGTAGT GTTCACTTCAACACTTCAACTGACGCAGTCGCGTTTTCCATCACTCATTG ACCCAACCCAACCCACGAATCTATCGCACAGACAACGGTGTTTATGCCTG CAACGCGTGGTGGCTGGTTCTTCTCTGCGTCTTGCGGCTGCCGTTCCGTG TGTCTGAGCTGCCTCTTCATCGTCAACATTCTGCTTCCCAGAATTACGCC AGGTGTCGCTGCTTTTACCATGGTTAGTGTCAAGCGCAGAAAGGCTCCTG TCGCCTCCGCTCTTATAGCTGGCATGCACAAGAAGGCTCCTGCAACTGCC GCATTCGTCGTGCGCACGACAGCAACATTCGCTCAGAGCAGCGGCACCGA CAGTGGTACCAGCAGCAGCACCAGCATCAGCACCACCACCAGCACAAGCA GCTGCAAAAGCAGCAGCGCTAGTGGTGGCGGCTTGCTCGAGAAATTTGGG TCGCCTGAAATTCCCTTGCGTCTTATACTCGTTGGCCACAATCCATCGGC CGCAGCGTGGCGCGACGGGCACTACTACTCAAATCCTTCCAATCGTATGT GGCGTCTACTCAGCGGCGCAGGCATAATACCTGCAAATTATACGGCTCTA GATGACGACAAATGCCCCGCAACCTGCGGCATAGGTTTCACGGATTTGGG TCACGGTATACCAGGCACCGACTCTAGCCAGTTCAGACCCAAAGTTCTTC ACATGTGGAGGGAGAGTCTCTATCAACGCTTACGAGGACATTCTGACCGT GCCGGAGCACCACCAAAAATTGTCGCTTTTACAGGGAAACGTCAATTTAA AGAGCTCTTCTACGATTCACCTGCATACAAAAAAAAAGGTCTCATTTCGT ATGGTCTTCAAACCATGCGCCCGGAAGGCTTTCCATTCACGGTCGAGGAG ACGCAGTTGTTTGTGTTGACATCGTCGAGTGGAGCGGCGGCCATGAGTAA TGAGGCTCGAGAGGCGCCGTACAAGGAATTGGCTGTTTTGCTGCAACAGT TCCCATGGGGTGCCCCGCCGCCCACGAAGACAACAAGGGGGAGAAATTTG AAATAAGGTGTGTGTAATCGTCGGGTGTATAGCTCGCGATGTTTCCAAAA TTGAGTTGAATCCTAAAATGCAACACATAAAGTAATTGAAAAAGAAGATA GAACGGAGAAAATATAGATATGT back to topprotein sequence of NO07G01670.2 >NO07G01670.2-protein ID=NO07G01670.2-protein|Name=NO07G01670.2|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp MPATRGGWFFSASCGCRSVCLSCLFIVNILLPRITPGVAAFTMVSVKRRK APVASALIAGMHKKAPATAAFVVRTTATFAQSSGTDSGTSSSTSISTTTS TSSCKSSSASGGGLLEKFGSPEIPLRLILVGHNPSAAAWRDGHYYSNPSN RMWRLLSGAGIIPANYTALDDDKCPATCGIGFTDLGHGIPGTDSSQFRPK VLHMWRESLYQRLRGHSDRAGAPPKIVAFTGKRQFKELFYDSPAYKKKGL ISYGLQTMRPEGFPFTVEETQLFVLTSSSGAAAMSNEAREAPYKELAVLL QQFPWGAPPPTKTTRGRNLK* back to topmRNA from alignment at chr7:506118..509180+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G01670.2 ID=NO07G01670.2|Name=NO07G01670.2|organism=Nannochloropsis oceanica|type=mRNA|length=3063bp|location=Sequence derived from alignment at chr7:506118..509180+ (Nannochloropsis oceanica) CAAAGCACCTCCAATGGTGGCTTTCCTCCGTTCTTGACGCCCTGGGTACC
TTGCGTCGTGTTCGGCCCATGTTTCTTGTTTGTCTCTTGACATAAGCCAT
CCCTTCCCCCATCTTCCAGTGTAAGATATGACCACCCGTGGAAGGCAAGG
CGGACAAAGTATGGTCATCTCATGAAGCTCTTGCTGGGTGGTCACCGTGA
TACGTCATCAATGGGTTCATGGTGGGGAGAGACAGGCAGGCAGTAGGAAG
AGGAGAAGTAGGAGGAGGCCACGTGCGGAAATAAGCATGATCTACTTTGG
ATCGGTCATTTGAGTGAATATTGTACTAAACGTTGAAGCCCAAGGGGTAA
TACCGCACAGAAAGCTACAAAAACTGGTGCTTGTCGAGCAAATGCGTGTA
CTTTGGCATGCAAGCAACCACACACAGACAAAGCAGTTTTCAAGCACTTT
TTTAGATAAATTTACCATTTTTTCCAACAAAATCAAAAACAAATGTGGGT
AACAGTTGCTTGCTTTTTCGGTATTCGAATGATACTTCCAACCAGTCTTT
TATCGCCACCATCGGGTACGTCTTTTGGGAGCCCGTACATATGCCACCTG
GAGCATTCTTGACAAACGGAAGAGGCAGCATGCACGCATGTCAATGAAGT
TGTCGCTTTGAAATATACCCCTCTTCCTTGCGCTTGCATTTTTTATTCCT
ACCCAAACACACAGCATCGACTTCAAGATAAAATCCCCTCCTCCTGGGTG
ACAAGAGACCCAAGCTCCAAATCTGGGACACGAACCCTAACCCTAACAGA
GGAAAAGAGTCCGTTTCGGAGGTTCGTTTTTGTTTCTTTTTGGAGACGTC
AACCACTTCCGGGGGCAAACCGTCCATAAAATTGTTATCTATTTGCCTTC
CCCGGTATTTGCCCATCGCGCTCTCGAGAGCGAGAGTAGGAGACCCCACC
AACATCACCATGATGATCACCCACCCTCCTCTGCACGGCCCGCCACCTCC
CACATTCACCACACCCAATGTGGTCTGTAAGAAAGTGTTCGTGTACATGC
AATCACCACAGCCATCACCACAGCAACCCCAAGAACTGATGGAAGTATAG
AAGCCGGGCGGGTTCACGGAGTTTAAGTGCTCCGTGGGGTGGGCTTATTT
TGGTGCTCACATTAAGATAAAAAAAATGGTATAATCCATAGGCCGCGCAT
CCTCGTTATCGTCCTGCGCCGGCCTGTCTGCTGAGAGGTATACCATCTCT
TCTCCGGGGAAAGAATGGACGGCGTAGTCATTCGAGGCGTCGACGTCCTT
ATTCTTGGGGTTGAGGATGGTGCGATCAATGAGAGTTTTCTTCGTTGTAT
TGCGCGCGTTATTGAAGTCCCCGTAGACGTGGTCGAGGAGCCTAATGGGG
TCGTAGTTCAACTCTGACGGAGGGTGCATGAAGGGGGGCAGGACGAACTC
CAGCTGGGGTGGAGGGAAAGGCGGGGTGGAATGGAGGGTGCCTACTGTCG
GAGTGGGTGGGGTTGCCCGTCCTTCCCCTACCGCGAGGAGGAGGTCCGCC
CGCATACCATTGGAGAAGATCCTAAGATCCTGGCCCGCGTCGTGCGCCGC
ACGGATACGCACGTTTTCCTCCAGGGTAACGACGCGGACACGTTGCCAGA
GAGGGCTACAAATTGGGGAAGCGCGCACGGTAGCACTTTGGTCGTCGTCT
CGGACCACTAGGAGGATTTTACGTCGATCCCCCGGGGGTTATTCGGTAGT
GTTCACTTCAACACTTCAACTGACGCAGTCGCGTTTTCCATCACTCATTG
ACCCAACCCAACCCACGAATCTATCGCACAGACAACGGTGTTTATGCCTG
CAACGCGTGGTGGCTGGTTCTTCTCTGCGTCTTGCGGCTGCCGTTCCGTG
TGTCTGAGCTGCCTCTTCATCGTCAACATTCTGCTTCCCAGAATTACGCC
AGGTGTCGCTGCTTTTACCATGGTTAGTGTCAAGCGCAGAAAGGCTCCTG
TCGCCTCCGCTCTTATAGCTGGCATGCACAAGAAGGCTCCTGCAACTGCC
GCATTCGTCGTGCGCACGACAGCAACATTCGCTCAGAGCAGCGGCACCGA
CAGTGGTACCAGCAGCAGCACCAGCATCAGCACCACCACCAGCACAAGCA
GCTGCAAAAGCAGCAGCGCTAGTGGTGGCGGCTTGCTCGAGAAATTTGGG
TCGCCTGAAATTCCCTTGCGTCTTATACTCGTTGGCCACAATCCATCGGC
CGCAGCGTGGCGCGACGGGCACTACTACTCAAATCCTTCCAATCGTATGT
GGCGTCTACTCAGCGGCGCAGGCATAATACCTGCAAATTATACGGCTCTA
GATGACGACAAATGCCCCGCAACCTGCGGCATAGGTTTCACGGATTTGGT
GCGTACTCTTTCTTGTGACATTATGGCTAGCGTTGCTAGTCGATTGCTCT
CTTATCCCCTCGCTCTTCTTCCTCCTTCCCCCCCGTTTTTTTTCGATCGA
CCCTAACGAGATCTTCTTTCATAATTCATAATTAAAAGGGTCACGGTATA
CCAGGCACCGACTCTAGCCAGTTCAGACCCAAAGTTCTTCACATGTGGAG
GGAGAGTCTCTATCAACGCTTACGAGGACATTCTGACCGTGCCGGAGCAC
CACCAAAAATTGTCGCTTTTACAGGGAAACGTCAATTTAAAGAGCTCTTC
TACGATTCACCTGCATACAAAAAAAAAGGTCTCATTTCGTATGGTCTTCA
AACCATGCGCCCGGAAGGCTTTCCATTCACGGTCGAGGAGACGCAGTTGT
TTGTGTTGACATCGTCGAGTGGAGCGGCGGCCATGAGTAATGAGGCTCGA
GAGGCGCCGTACAAGGAATTGGCTGTTTTGCTGCAACAGTTCCCATGGGG
TGCCCCGCCGCCCACGAAGACAACAAGGGGGAGAAATTTGAAATAAGGTG
TGTGTAATCGTCGGGTGTATAGCTCGCGATGTTTCCAAAATTGAGTTGAA
TCCTAAAATGCAACACATAAAGTAATTGAAAAAGAAGATAGAACGGAGAA
AATATAGATATGT back to topCoding sequence (CDS) from alignment at chr7:506118..509180+ >NO07G01670.2 ID=NO07G01670.2|Name=NO07G01670.2|organism=Nannochloropsis oceanica|type=CDS|length=963bp|location=Sequence derived from alignment at chr7:506118..509180+ (Nannochloropsis oceanica) ATGCCTGCAACGCGTGGTGGCTGGTTCTTCTCTGCGTCTTGCGGCTGCCG TTCCGTGTGTCTGAGCTGCCTCTTCATCGTCAACATTCTGCTTCCCAGAA TTACGCCAGGTGTCGCTGCTTTTACCATGGTTAGTGTCAAGCGCAGAAAG GCTCCTGTCGCCTCCGCTCTTATAGCTGGCATGCACAAGAAGGCTCCTGC AACTGCCGCATTCGTCGTGCGCACGACAGCAACATTCGCTCAGAGCAGCG GCACCGACAGTGGTACCAGCAGCAGCACCAGCATCAGCACCACCACCAGC ACAAGCAGCTGCAAAAGCAGCAGCGCTAGTGGTGGCGGCTTGCTCGAGAA ATTTGGGTCGCCTGAAATTCCCTTGCGTCTTATACTCGTTGGCCACAATC CATCGGCCGCAGCGTGGCGCGACGGGCACTACTACTCAAATCCTTCCAAT CGTATGTGGCGTCTACTCAGCGGCGCAGGCATAATACCTGCAAATTATAC GGCTCTAGATGACGACAAATGCCCCGCAACCTGCGGCATAGGTTTCACGG ATTTGGGTCACGGTATACCAGGCACCGACTCTAGCCAGTTCAGACCCAAA GTTCTTCACATGTGGAGGGAGAGTCTCTATCAACGCTTACGAGGACATTC TGACCGTGCCGGAGCACCACCAAAAATTGTCGCTTTTACAGGGAAACGTC AATTTAAAGAGCTCTTCTACGATTCACCTGCATACAAAAAAAAAGGTCTC ATTTCGTATGGTCTTCAAACCATGCGCCCGGAAGGCTTTCCATTCACGGT CGAGGAGACGCAGTTGTTTGTGTTGACATCGTCGAGTGGAGCGGCGGCCA TGAGTAATGAGGCTCGAGAGGCGCCGTACAAGGAATTGGCTGTTTTGCTG CAACAGTTCCCATGGGGTGCCCCGCCGCCCACGAAGACAACAAGGGGGAG AAATTTGAAATAA back to top
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