NO07G01500.1, NO07G01500.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO07G01500.1
Unique Name	NO07G01500.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3122
Alignment location	chr7:460172..463954 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7	genome	chr7:460172..463954 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO07G01500.1 vs.
Match: ATB53144.1 (diacylglycerol acyltransferase [Nannochloropsis oceanica strain IMET1])

HSP 1 Score: 654.8 bits (1688), Expect = 1.400e-184
Identity = 314/319 (98.43%), Postives = 315/319 (98.75%), Query Frame = 0

Query:    5 MATTSSPKHPPPDLKERLIGGLLLASLIHVWLFGVIVVPLAMYQLLAQGDYRIALGLLLYYAYRSVFPTKEWGIVRNIYRAGNRYFYPQEVIFDGFNEIKPDSRSLICMHPHGILTIGWALTSTSPTMAHANVKWLVTEALLRLPFISDFLSWNGCAHASKSYMQNRMTKGANLALLPGGFEEASLYQRNTYRVYVRKRTGFIVYALRYGYKIYPSFVFGEEKCYFSLIPDWGWLTATRLWLNQYRIPAVAFVGKLFLVPGWDSHLITVIGAPVVLPRLDKPTEEEVGKYHLMYVSALMELFEKHKRQYCEKGAKLELW 324
            MATTSSPKHPPPDLKERLIGGLLLASLIHVWLFGVIVVPL MYQLLAQGDYRIALGLLLYYAYRSVFPTKEWGIVRNI RAGNRYFYPQEVIFDGFNEI+PDSRSLICMHPHGILTIGWALTSTSPTMAHANVKWLVTEALLRLPFISDFLSWNGCAHASKSYMQNRMTKGANLALLPGGFEEASLYQRNTYRVYVRKRTGFIVYALRYGYKIYPSFVFGEEKCYFSLIPDWGWLTATRLWLNQY IPAVAFVGKLFLVPGW SHLITVIGAPVVLPRLDKPTEEEVGKYHLMYVSALMELFEKHKRQYCEKGAKLELW
Sbjct:    1 MATTSSPKHPPPDLKERLIGGLLLASLIHVWLFGVIVVPLTMYQLLAQGDYRIALGLLLYYAYRSVFPTKEWGIVRNINRAGNRYFYPQEVIFDGFNEIEPDSRSLICMHPHGILTIGWALTSTSPTMAHANVKWLVTEALLRLPFISDFLSWNGCAHASKSYMQNRMTKGANLALLPGGFEEASLYQRNTYRVYVRKRTGFIVYALRYGYKIYPSFVFGEEKCYFSLIPDWGWLTATRLWLNQYLIPAVAFVGKLFLVPGWGSHLITVIGAPVVLPRLDKPTEEEVGKYHLMYVSALMELFEKHKRQYCEKGAKLELW 319

The following BLAST results are available for this feature:

BLAST of NO07G01500.1 vs.

BLAST of NO07G01500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
ATB53144.1	1.400e-184	98.43	diacylglycerol acyltransferase [Nannochloropsis oc...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO07G01500	NO07G01500	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO07G01500.1	NO07G01500.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO07G01500.1.cds1	NO07G01500.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G01500.1.cds2	NO07G01500.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G01500.1.cds3	NO07G01500.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G01500.1.cds4	NO07G01500.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr7:460172..463954+
coding sequence from alignment at chr7:460172..463954+

mRNA sequence

>NO07G01500.1 ID=NO07G01500.1|Name=NO07G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=3122bp
TCGACCTCCTCTCATCATATCTCCGTATCTCGACCATCACACAAAACCTA
AATCAACACGAGCAATTCTCACCCTCTAACCCTTTTGCGAAGCGCAGGCG
AATCCTCGATGACGATAGCCATGGCCACAACCTCGTCGCCTAAACATCCT
CCGCCTGATCTGAAGGAACGCCTTATTGGGGGGTTACTCCTCGCTTCGCT
AATCCATGTATGGCTCTTTGGTGTCATCGTTGTACCCTTGGCCATGTACC
AGTTGCTGGCACAGGGCGACTACCGCATCGCCCTTGGCCTCCTCCTTTAT
TACGCCTACCGCTCGGTCTTTCCGACGAAGGAATGGGGCATCGTTCGCAA
CATCTATAGAGCAGGCAACCGATATTTCTACCCACAAGAGGTCATTTTTG
ATGGCTTCAATGAGATCAAACCCGATTCGAGGTCATTGATTTGCATGCAC
CCGCACGGGATCTTGACGATTGGTTGGGCGTTGACCAGCACGAGTCCGAC
CATGGCGCACGCCAACGTGAAGTGGCTGGTGACAGAAGCTTTGTTGCGGC
TGCCTTTTATCAGCGACTTCCTCTCCTGGAACGGTTGTGCACACGCCAGC
AAGAGCTACATGCAAAATCGTATGACGAAGGGTGCGAATCTTGCTCTGCT
CCCCGGCGGATTTGAAGAGGCTTCTCTCTATCAACGCAACACTTATCGTG
TTTACGTCAGAAAGCGCACAGGCTTTATTGTGTATGCCCTCAGGTATGGG
TACAAGATTTACCCATCGTTCGTCTTTGGGGAGGAAAAGTGTTATTTCTC
CTTGATACCCGACTGGGGTTGGCTGACAGCGACCAGGTTATGGTTGAACC
AGTACCGGATACCGGCAGTTGCGTTCGTCGGAAAGTTATTTTTGGTTCCT
GGTTGGGATTCACATTTGATAACGGTGATCGGCGCCCCCGTGGTGTTGCC
GAGGCTGGACAAGCCGACTGAGGAGGAGGTGGGGAAATACCATTTAATGT
ATGTGAGTGCATTGATGGAATTATTCGAGAAGCACAAACGGCAATATTGT
GAAAAGGGGGCGAAGTTGGAGTTGTGGTAGGAGATGGAGAGAGGGAAGGC
AAGGTACGCATATGTACAGAGTTCTGGCGGGAGCAATCGACTGATGGGAG
GCGGGAGAGGGGCAAGGGGAAACAACGAAACTTAGAGAAAGGGAGAGACT
TCTCAACCGCGACGCTGCGTGATGGCGCGGGTTGCGTGGGTGGAGCCATG
ACATTGTTTTTTTAAAAAAAGATCAGCAGTAAATGCCACATTTTCCGTCT
TTTTTGAGAACTAGGATAGATGATGAAAATGAAGGAAGTACAAGTCAAGA
TGGATAATTCACAGGTAGGGCAGCGCGCAACGTGTGGCGGGAGAGGCGCT
GTTTATTCAACTCACTGGTCATATTTGTGTCTGTATACACATATTTATTG
TGTGTCTTTTCGTGTGGCGGCCATAGATCGTAGAGCAATCGTCCTGTTCT
ACTTTCTTAATTCCCTCTCTTCAAGGAATCCATCCCGTCAAAAATCATTC
GCTCACACGGGCCTGTTCCGCTTCTTTACCGCCTCCAAATCCAGGCAATC
AGACGGGACCCGGCTCTATCCCTTTGCCATTACCTCATTCTTCCCTGCCT
CCTCCCCCCTCACCTTCTTGATCGCCACAAAAAACAAACAATCATATACT
GTCCTCATCATCGACCTTCCATCTGCCGCATATGTCACCCCTTCTCTGAA
CTCCTCCTTTGCAATCTCAAACTCCCAGCCGTCATCCCTCACTCCCTCCC
CTCCCGCGCCGACCATCACATGCCTCATATCCTCCCAATTCAATTCTACA
GATTTTGCAAACCTCTCATCCCCCTCCCCCCCCCCTCCCGCCCGATCTCC
CCTAGCCCAGTGATACAGCAACGGACCAAAATTAATCCAGACTCCCCCAG
GACGAAGCAAACGATGGATGGCCTCTATATATTCAAGCACGATTGGCGCT
GTATCGAGAAAAAAGCACGTGACGACGGCATCCCAACACTCTTTTTGGTT
GGCATACACCTCGACAAATTCACCGGCAGTCATGCTGAAGTCTGGTTGCC
AGGGGGAGGGAGAGGAGGAGGACGAAGGGTGGTGCTGGCCATGCTCTCCT
CCTTCTCTCCCTTCTCCACCCTCTGTTAATTTTCCGTTTTCCTGTGCTCC
TACTCCTCCCACCTCGTCTCCCTCCCGATACCCCTCCCTCCACAGCAGTT
TTGCAGGGCACACATCCGGCACCTTAATTTCCCTCACATTGTCCCCTGTC
TTCTTGATATTACAACTTTGGTCAACGAATGGATGGAGGTCGAACATCCC
CGCTTCTTCGACGTGATTAAGAAGAAAGTTGGAGGTTAAGAGCATAAAGT
AGGAGAATTCATTTCCTTGACAAGCATAGCCCCGGTGCACAATCTCAAGT
GGGAGTCTGCCTAACCCTGCCCCAGGCACGAGCACCTTTTGTTTGTGTCG
ATTCGCAGACGTGACGGGCAAGAATTCAGTAAGTGCGTCTATGATTACAT
CAAAACAGGCGGTGCGTTCCGCTATACCGTCTTGTGACCACTCCCGCAAG
CAGCTATGCAATGTCGCGTGTATTTTGCTGATATTTGCCCGGCTTGTTAG
AACTTCTCGTGGGGCTGCTGCGGCGTGCTGAGCAAGTTGCTCCATCGCCA
AGGCAACCATACCGTCAACAGGTGCAATTTCGTCCACGCCTTGCACAACT
GCGTTTAAGAAGGCCTGATTTGCCTGTATGGCCTCCCGGTGCTGTCGCAA
GGAGGGGGCCAAGGATCGGGTAGGGAGCAAGCGGGCGTATTTCTGAGGGA
GGCGGCACAAATGGAGCCAGCGACGCTCAATCTCCAACCCTGCAAACTTA
CTATATTCGAGAAACGCCACCACGACCTCGAACAAGTGCTGGCGCTCCTT
CAGTATATCACCCTCCTCTGTCCCTGCTATCATGGAACTGGGAGCAGATG
GGGGAGGGATGTTTTTAGAATGATTGTTCCTGTGTCCTCCTCCTCCACAG
CGGCAACCACCTCCACTGCCACCACCACTTGATCGTTGCCGTTCCTTCTT
ACCACCGAGCATCTGTCTATGT

protein sequence of NO07G01500.1

>NO07G01500.1-protein ID=NO07G01500.1-protein|Name=NO07G01500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MTIAMATTSSPKHPPPDLKERLIGGLLLASLIHVWLFGVIVVPLAMYQLL
AQGDYRIALGLLLYYAYRSVFPTKEWGIVRNIYRAGNRYFYPQEVIFDGF
NEIKPDSRSLICMHPHGILTIGWALTSTSPTMAHANVKWLVTEALLRLPF
ISDFLSWNGCAHASKSYMQNRMTKGANLALLPGGFEEASLYQRNTYRVYV
RKRTGFIVYALRYGYKIYPSFVFGEEKCYFSLIPDWGWLTATRLWLNQYR
IPAVAFVGKLFLVPGWDSHLITVIGAPVVLPRLDKPTEEEVGKYHLMYVS
ALMELFEKHKRQYCEKGAKLELW*

mRNA from alignment at chr7:460172..463954+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO07G01500.1 ID=NO07G01500.1|Name=NO07G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=3783bp|location=Sequence derived from alignment at chr7:460172..463954+ (Nannochloropsis oceanica)
TCGACCTCCTCTCATCATATCTCCGTATCTCGACCATCACACAAAACCTA
AATCAACACGAGCAATTCTCACCCTCTAACCCTTTTGCGAAGCGCAGGCG
AATCCTCGATGACGATAGCCATGGCCACAACCTCGTCGCCTAAACATCCT
CCGGTACGTAGTGTGATACATCGCTGCTGCTTGGGCTCGAGTCCACCTCA
GCCGCCCCTTCCCGGCCCATGAGCAGGACATGAAGACCCACGCGAGCCTT
GTCCTACACCATCCTGCGACGACAAGAATTATTTTTTGTGACTTTATATA
CGCCATATAATATGCCTGCTCATTCCCATCGTAGCAGTACTTCCCTTGTC
ACGCTCGTCCGGTCCCAACTCCATACCTCAACTTACACAAAACCCCTCCT
CCTTCAACCCCAACCACGCAGCCTGATCTGAAGGAACGCCTTATTGGGGG
GTTACTCCTCGCTTCGCTAATCCATGTATGGCTCTTTGGTGTCATCGTTG
TACCCTTGGCCATGTACCAGTTGCTGGCACAGGTAGGAGGCACTGGGGGC
AAGGGGATGGGGGAAGGAGTGCTTTCTCGTGTCCTCCCTGGCCGTCGTTG
ATTAGGTGGTGATTTAAATCAGGCACATGGGTCATTTACTCTTCACATCA
TTCATCATCTCATATGTTCGTGCCTCATTCTGACTTCCATCATCCTTTCA
CCAACACAGGGCGACTACCGCATCGCCCTTGGCCTCCTCCTTTATTACGC
CTACCGCTCGGTCTTTCCGACGAAGGAATGGGGCATCGTTCGCAACATCT
ATAGAGCAGGCAACCGATATTTCTACCCACAAGAGGTCATTTTTGATGGC
TTCAATGAGATCAAACCCGATTCGAGGTCATTGATTTGCATGCACCCGCA
CGGGATCTTGACGATTGGTTGGGCGTTGACCAGCACGAGTCCGACCATGG
CGCACGCCAACGTGAAGTGGCTGGTGACAGAAGCTTTGTTGCGGCTGCCT
TTTATCAGGTAATTAATGGCATTATCCTTCTTATCCGCCCCCCTTCCCCC
TTCTTCCTTCCTCTTACCTTCCATCAGAACTTGACTTGTACATTTTCTTC
TTTCCTTCCTCATTCCCATCTTCCTTCGGAAGTTGATTCGCACATTTTCT
TTCACAAATACGGTCCGATCCTCGCTCCTTCCCTTCTTGCTTCCCAACTT
CCCTCCTTCTCTTCCTCTCAACAGCGACTTCCTCTCCTGGAACGGTTGTG
CACACGCCAGCAAGAGCTACATGCAAAATCGTATGACGAAGGGTGCGAAT
CTTGCTCTGCTCCCCGGCGGATTTGAAGAGGCTTCTCTCTATCAACGCAA
CACTTATCGTGTTTACGTCAGAAAGCGCACAGGCTTTATTGTGTATGCCC
TCAGGTATGGGTACAAGATTTACCCATCGTTCGTCTTTGGGGAGGAAAAG
TGTTATTTCTCCTTGATACCCGACTGGGGTTGGCTGACAGCGACCAGGTT
ATGGTTGAACCAGTACCGGATACCGGCAGTTGCGTTCGTCGGAAAGTTAT
TTTTGGTTCCTGGTTGGGATTCACATTTGATAACGGTGATCGGCGCCCCC
GTGGTGTTGCCGAGGCTGGACAAGCCGACTGAGGAGGAGGTGGGGAAATA
CCATTTAATGTATGTGAGTGCATTGATGGAATTATTCGAGAAGCACAAAC
GGCAATATTGTGAAAAGGGGGCGAAGTTGGAGTTGTGGTAGGAGATGGAG
AGAGGGAAGGCAAGGTACGCATATGTACAGAGTTCTGGCGGGAGCAATCG
ACTGATGGGAGGCGGGAGAGGGGCAAGGGGAAACAACGAAACTTAGAGAA
AGGGAGAGACTTCTCAACCGCGACGCTGCGTGATGGCGCGGGTTGCGTGG
GTGGAGCCATGACATTGTTTTTTTAAAAAAAGATCAGCAGTAAATGCCAC
ATTTTCCGTCTTTTTTGAGAACTAGGATAGATGATGAAAATGAAGGAAGT
ACAAGTCAAGATGGATAATTCACAGGTAGGGCAGCGCGCAACGTGTGGCG
GGAGAGGCGCTGTTTATTCAACTCACTGGTCATATTTGTGTCTGTATACA
CATATTTATTGTGTGTCTTTTCGTGTGGCGGCCATAGATCGTAGAGCAAT
CGTCCTGTTCTACTTTCTTAATTCCCTCTCTTCAAGGAATCCATCCCGTC
AAAAATCATTCGCTCACACGGGCCTGTTCCGCTTCTTTACCGCCTCCAAA
TCCAGGCAATCAGACGGGACCCGGCTCTATCCCTTTGCCATTACCTCATT
CTTCCCTGCCTCCTCCCCCCTCACCTTCTTGATCGCCACAAAAAACAAAC
AATCATATACTGTCCTCATCATCGACCTTCCATCTGCCGCATATGTCACC
CCTTCTCTGAACTCCTCCTTTGCAATCTCAAACTCCCAGCCGTCATCCCT
CACTCCCTCCCCTCCCGCGCCGACCATCACATGCCTCATATCCTCCCAAT
TCAATTCTACAGATTTTGCAAACCTCTCATCCCCCTCCCCCCCCCCTCCC
GCCCGATCTCCCCTAGCCCAGTGATACAGCAACGGACCAAAATTAATCCA
GACTCCCCCAGGACGAAGCAAACGATGGATGGCCTCTATATATTCAAGCA
CGATTGGCGCTGTATCGAGAAAAAAGCACGTGACGACGGCATCCCAACAC
TCTTTTTGGTTGGCATACACCTCGACAAATTCACCGGCAGTCATGCTGAA
GTCTGGTTGCCAGGGGGAGGGAGAGGAGGAGGACGAAGGGTGGTGCTGGC
CATGCTCTCCTCCTTCTCTCCCTTCTCCACCCTCTGTTAATTTTCCGTTT
TCCTGTGCTCCTACTCCTCCCACCTCGTCTCCCTCCCGATACCCCTCCCT
CCACAGCAGTTTTGCAGGGCACACATCCGGCACCTTAATTTCCCTCACAT
TGTCCCCTGTCTTCTTGATATTACAACTTTGGTCAACGAATGGATGGAGG
TCGAACATCCCCGCTTCTTCGACGTGATTAAGAAGAAAGTTGGAGGTTAA
GAGCATAAAGTAGGAGAATTCATTTCCTTGACAAGCATAGCCCCGGTGCA
CAATCTCAAGTGGGAGTCTGCCTAACCCTGCCCCAGGCACGAGCACCTTT
TGTTTGTGTCGATTCGCAGACGTGACGGGCAAGAATTCAGTAAGTGCGTC
TATGATTACATCAAAACAGGCGGTGCGTTCCGCTATACCGTCTTGTGACC
ACTCCCGCAAGCAGCTATGCAATGTCGCGTGTATTTTGCTGATATTTGCC
CGGCTTGTTAGAACTTCTCGTGGGGCTGCTGCGGCGTGCTGAGCAAGTTG
CTCCATCGCCAAGGCAACCATACCGTCAACAGGTGCAATTTCGTCCACGC
CTTGCACAACTGCGTTTAAGAAGGCCTGATTTGCCTGTATGGCCTCCCGG
TGCTGTCGCAAGGAGGGGGCCAAGGATCGGGTAGGGAGCAAGCGGGCGTA
TTTCTGAGGGAGGCGGCACAAATGGAGCCAGCGACGCTCAATCTCCAACC
CTGCAAACTTACTATATTCGAGAAACGCCACCACGACCTCGAACAAGTGC
TGGCGCTCCTTCAGTATATCACCCTCCTCTGTCCCTGCTATCATGGAACT
GGGAGCAGATGGGGGAGGGATGTTTTTAGAATGATTGTTCCTGTGTCCTC
CTCCTCCACAGCGGCAACCACCTCCACTGCCACCACCACTTGATCGTTGC
CGTTCCTTCTTACCACCGAGCATCTGTCTATGT

Coding sequence (CDS) from alignment at chr7:460172..463954+

>NO07G01500.1 ID=NO07G01500.1|Name=NO07G01500.1|organism=Nannochloropsis oceanica|type=CDS|length=972bp|location=Sequence derived from alignment at chr7:460172..463954+ (Nannochloropsis oceanica)
ATGACGATAGCCATGGCCACAACCTCGTCGCCTAAACATCCTCCGCCTGA
TCTGAAGGAACGCCTTATTGGGGGGTTACTCCTCGCTTCGCTAATCCATG
TATGGCTCTTTGGTGTCATCGTTGTACCCTTGGCCATGTACCAGTTGCTG
GCACAGGGCGACTACCGCATCGCCCTTGGCCTCCTCCTTTATTACGCCTA
CCGCTCGGTCTTTCCGACGAAGGAATGGGGCATCGTTCGCAACATCTATA
GAGCAGGCAACCGATATTTCTACCCACAAGAGGTCATTTTTGATGGCTTC
AATGAGATCAAACCCGATTCGAGGTCATTGATTTGCATGCACCCGCACGG
GATCTTGACGATTGGTTGGGCGTTGACCAGCACGAGTCCGACCATGGCGC
ACGCCAACGTGAAGTGGCTGGTGACAGAAGCTTTGTTGCGGCTGCCTTTT
ATCAGCGACTTCCTCTCCTGGAACGGTTGTGCACACGCCAGCAAGAGCTA
CATGCAAAATCGTATGACGAAGGGTGCGAATCTTGCTCTGCTCCCCGGCG
GATTTGAAGAGGCTTCTCTCTATCAACGCAACACTTATCGTGTTTACGTC
AGAAAGCGCACAGGCTTTATTGTGTATGCCCTCAGGTATGGGTACAAGAT
TTACCCATCGTTCGTCTTTGGGGAGGAAAAGTGTTATTTCTCCTTGATAC
CCGACTGGGGTTGGCTGACAGCGACCAGGTTATGGTTGAACCAGTACCGG
ATACCGGCAGTTGCGTTCGTCGGAAAGTTATTTTTGGTTCCTGGTTGGGA
TTCACATTTGATAACGGTGATCGGCGCCCCCGTGGTGTTGCCGAGGCTGG
ACAAGCCGACTGAGGAGGAGGTGGGGAAATACCATTTAATGTATGTGAGT
GCATTGATGGAATTATTCGAGAAGCACAAACGGCAATATTGTGAAAAGGG
GGCGAAGTTGGAGTTGTGGTAG

Synonyms

Publications