NO07G01420.1, NO07G01420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01420.1
Unique NameNO07G01420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1332
Alignment locationchr7:436087..437418 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:436087..437418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01420.1 vs.
Match: EWM27249.1 (cytochrome b5-related protein [Nannochloropsis gaditana])

HSP 1 Score: 483.4 bits (1243), Expect = 7.500e-133
Identity = 238/386 (61.66%), Postives = 280/386 (72.54%), Query Frame = 0 
Query:    1 MDKPLPSRGNFYSSRHVWLKEIGEAQRQRLGHAAHEWVVHKKVYDLASYLDSHPGGRAWLDLTRGMDVTPLFESHHVNDAKTQAILRKFYIRDCKTTTTSPSATAEPLAAAAPSTPTRLETWPSVAGTPSASDFRNDDPEADFSFRNRAFYKIFKRRAAKVLEKAEDSSNSGSARGARGPTTEMRVLVWILLSAWLLSLAWCCREGAGVGPAVVAGVLLNALTGIGHNAMHSVPSWWRYLMDLSLFSSEEWRISHCISHHHYPGSQIDFEVAAIEPFIHSLYSGPPSNQFLPFYLWWVLCILGPFELLARGMNVFFLRIQPLRWENLLPFMELGLLIVFAGGGKGGVVVGGEGLKKWVVMHVAASVLMGLQALPLHHSEHAWMDGK 387
            MD+ LPSR   +S R  W+KE+GEAQR+R GH+AHEWVVH KVYDLA YL SHPGGR WL+LT+GMDVTPLFESHHV+DAKT+A+L +FY+RDC  T    SA  +PL          L    SVA   +     +   EADFSF +  FY+ FKRRA   L  AE++S + S RGARGPT EMR L W LL AWL +L WCC   +G  PAVVAG+LLNAL GIGHN MH+ P+WWR+L+DLSLFSS EW ISHC+SHHHYPG+Q DFEVAAIEPFI+SLY+GP +N +LPFY W VLCILGPFELLAR +N+   RIQP R E+LLP  EL LL++F   G         G  +W+ MHV ASVL+GLQALPLHHSEHAW DGK
Sbjct:    1 MDRALPSRNALFSCRRAWMKEMGEAQRERFGHSAHEWVVHGKVYDLAPYLASHPGGRHWLELTQGMDVTPLFESHHVDDAKTRAVLGQFYVRDCPNTPPPASALRQPL----------LSPEASVAPQSNKGADGSSPVEADFSFLDSGFYRSFKRRALGALRTAEENSKNKSKRGARGPTMEMRALTWALLLAWLSALVWCCSARSGSVPAVVAGILLNALAGIGHNGMHTAPTWWRWLLDLSLFSSHEWTISHCLSHHHYPGTQADFEVAAIEPFIYSLYAGPANNAYLPFYFWSVLCILGPFELLARLINIVLRRIQPWRPEHLLPGAELVLLMLFGRSG------AWAGWWRWLTMHVVASVLLGLQALPLHHSEHAWRDGK 370
The following BLAST results are available for this feature:
BLAST of NO07G01420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27249.17.500e-13361.66cytochrome b5-related protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01420NO07G01420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01420.1NO07G01420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01420.1.cds1NO07G01420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01420.1 ID=NO07G01420.1|Name=NO07G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1332bp
ATGGACAAGCCCTTGCCTTCCCGAGGTAACTTTTACTCCTCCCGTCATGT
CTGGCTAAAGGAAATTGGCGAAGCACAGCGTCAGCGTTTGGGACATGCTG
CGCACGAGTGGGTGGTCCATAAAAAGGTCTATGACCTGGCCTCGTACCTC
GACTCCCATCCCGGCGGGCGCGCCTGGCTTGATCTCACGCGCGGCATGGA
TGTCACGCCCCTCTTCGAAAGCCACCACGTGAACGATGCCAAGACACAGG
CGATACTCCGCAAGTTCTACATACGGGACTGCAAGACCACAACGACTTCT
CCCTCTGCCACTGCTGAGCCTCTTGCCGCCGCCGCTCCCTCAACGCCCAC
GCGCCTCGAGACCTGGCCTTCTGTTGCTGGGACACCCTCCGCTTCCGACT
TTCGCAACGACGACCCAGAGGCAGATTTCTCTTTCCGAAATAGAGCCTTT
TACAAGATCTTCAAGCGACGGGCCGCTAAAGTACTTGAAAAAGCAGAAGA
CAGCAGCAACTCCGGCAGCGCCCGCGGAGCCCGAGGCCCCACAACAGAGA
TGCGCGTGCTCGTCTGGATCTTATTGAGTGCATGGCTATTGTCCTTGGCC
TGGTGCTGCCGAGAAGGTGCTGGTGTGGGACCTGCGGTGGTGGCAGGGGT
GCTTCTAAATGCTTTGACTGGAATAGGGCATAATGCGATGCATTCGGTCC
CGAGCTGGTGGAGGTACCTGATGGACCTGTCATTGTTTTCAAGCGAGGAA
TGGAGGATTTCCCACTGTATCTCTCATCATCATTACCCTGGTAGTCAGAT
TGATTTTGAGGTGGCGGCCATTGAGCCTTTCATCCATAGTTTGTACTCGG
GACCGCCCAGTAATCAATTTTTACCATTTTACTTGTGGTGGGTATTATGC
ATTTTGGGGCCCTTCGAATTGCTAGCCCGGGGCATGAATGTATTCTTCTT
GCGTATTCAACCATTGCGATGGGAAAATTTGCTGCCGTTTATGGAGCTGG
GATTGTTAATAGTGTTTGCGGGTGGGGGAAAAGGAGGAGTAGTAGTAGGA
GGAGAAGGGTTGAAGAAGTGGGTAGTGATGCATGTGGCGGCCTCTGTTTT
GATGGGCTTGCAAGCATTGCCTCTTCATCACTCCGAGCACGCCTGGATGG
ATGGGAAAGATGACTTCTCCTCGCCTCCCTCTCTCCCTTCCGGTGAAGGC
AAGAGAGACAAGTCCCTCCTCCCTGCTTCTCCTTCCCCCCCTCTTCTCGT
CCTACAGTGCGCCCGATTGATTTTGGGCTGCATGCGCTACGAGCAACACA
GGACTACGACATTTCCGAGTTGCCATTATTAG
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protein sequence of NO07G01420.1

>NO07G01420.1-protein ID=NO07G01420.1-protein|Name=NO07G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp
MDKPLPSRGNFYSSRHVWLKEIGEAQRQRLGHAAHEWVVHKKVYDLASYL
DSHPGGRAWLDLTRGMDVTPLFESHHVNDAKTQAILRKFYIRDCKTTTTS
PSATAEPLAAAAPSTPTRLETWPSVAGTPSASDFRNDDPEADFSFRNRAF
YKIFKRRAAKVLEKAEDSSNSGSARGARGPTTEMRVLVWILLSAWLLSLA
WCCREGAGVGPAVVAGVLLNALTGIGHNAMHSVPSWWRYLMDLSLFSSEE
WRISHCISHHHYPGSQIDFEVAAIEPFIHSLYSGPPSNQFLPFYLWWVLC
ILGPFELLARGMNVFFLRIQPLRWENLLPFMELGLLIVFAGGGKGGVVVG
GEGLKKWVVMHVAASVLMGLQALPLHHSEHAWMDGKDDFSSPPSLPSGEG
KRDKSLLPASPSPPLLVLQCARLILGCMRYEQHRTTTFPSCHY*
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mRNA from alignment at chr7:436087..437418+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01420.1 ID=NO07G01420.1|Name=NO07G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1332bp|location=Sequence derived from alignment at chr7:436087..437418+ (Nannochloropsis oceanica)
ATGGACAAGCCCTTGCCTTCCCGAGGTAACTTTTACTCCTCCCGTCATGT
CTGGCTAAAGGAAATTGGCGAAGCACAGCGTCAGCGTTTGGGACATGCTG
CGCACGAGTGGGTGGTCCATAAAAAGGTCTATGACCTGGCCTCGTACCTC
GACTCCCATCCCGGCGGGCGCGCCTGGCTTGATCTCACGCGCGGCATGGA
TGTCACGCCCCTCTTCGAAAGCCACCACGTGAACGATGCCAAGACACAGG
CGATACTCCGCAAGTTCTACATACGGGACTGCAAGACCACAACGACTTCT
CCCTCTGCCACTGCTGAGCCTCTTGCCGCCGCCGCTCCCTCAACGCCCAC
GCGCCTCGAGACCTGGCCTTCTGTTGCTGGGACACCCTCCGCTTCCGACT
TTCGCAACGACGACCCAGAGGCAGATTTCTCTTTCCGAAATAGAGCCTTT
TACAAGATCTTCAAGCGACGGGCCGCTAAAGTACTTGAAAAAGCAGAAGA
CAGCAGCAACTCCGGCAGCGCCCGCGGAGCCCGAGGCCCCACAACAGAGA
TGCGCGTGCTCGTCTGGATCTTATTGAGTGCATGGCTATTGTCCTTGGCC
TGGTGCTGCCGAGAAGGTGCTGGTGTGGGACCTGCGGTGGTGGCAGGGGT
GCTTCTAAATGCTTTGACTGGAATAGGGCATAATGCGATGCATTCGGTCC
CGAGCTGGTGGAGGTACCTGATGGACCTGTCATTGTTTTCAAGCGAGGAA
TGGAGGATTTCCCACTGTATCTCTCATCATCATTACCCTGGTAGTCAGAT
TGATTTTGAGGTGGCGGCCATTGAGCCTTTCATCCATAGTTTGTACTCGG
GACCGCCCAGTAATCAATTTTTACCATTTTACTTGTGGTGGGTATTATGC
ATTTTGGGGCCCTTCGAATTGCTAGCCCGGGGCATGAATGTATTCTTCTT
GCGTATTCAACCATTGCGATGGGAAAATTTGCTGCCGTTTATGGAGCTGG
GATTGTTAATAGTGTTTGCGGGTGGGGGAAAAGGAGGAGTAGTAGTAGGA
GGAGAAGGGTTGAAGAAGTGGGTAGTGATGCATGTGGCGGCCTCTGTTTT
GATGGGCTTGCAAGCATTGCCTCTTCATCACTCCGAGCACGCCTGGATGG
ATGGGAAAGATGACTTCTCCTCGCCTCCCTCTCTCCCTTCCGGTGAAGGC
AAGAGAGACAAGTCCCTCCTCCCTGCTTCTCCTTCCCCCCCTCTTCTCGT
CCTACAGTGCGCCCGATTGATTTTGGGCTGCATGCGCTACGAGCAACACA
GGACTACGACATTTCCGAGTTGCCATTATTAG
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Coding sequence (CDS) from alignment at chr7:436087..437418+

>NO07G01420.1 ID=NO07G01420.1|Name=NO07G01420.1|organism=Nannochloropsis oceanica|type=CDS|length=1332bp|location=Sequence derived from alignment at chr7:436087..437418+ (Nannochloropsis oceanica)
ATGGACAAGCCCTTGCCTTCCCGAGGTAACTTTTACTCCTCCCGTCATGT
CTGGCTAAAGGAAATTGGCGAAGCACAGCGTCAGCGTTTGGGACATGCTG
CGCACGAGTGGGTGGTCCATAAAAAGGTCTATGACCTGGCCTCGTACCTC
GACTCCCATCCCGGCGGGCGCGCCTGGCTTGATCTCACGCGCGGCATGGA
TGTCACGCCCCTCTTCGAAAGCCACCACGTGAACGATGCCAAGACACAGG
CGATACTCCGCAAGTTCTACATACGGGACTGCAAGACCACAACGACTTCT
CCCTCTGCCACTGCTGAGCCTCTTGCCGCCGCCGCTCCCTCAACGCCCAC
GCGCCTCGAGACCTGGCCTTCTGTTGCTGGGACACCCTCCGCTTCCGACT
TTCGCAACGACGACCCAGAGGCAGATTTCTCTTTCCGAAATAGAGCCTTT
TACAAGATCTTCAAGCGACGGGCCGCTAAAGTACTTGAAAAAGCAGAAGA
CAGCAGCAACTCCGGCAGCGCCCGCGGAGCCCGAGGCCCCACAACAGAGA
TGCGCGTGCTCGTCTGGATCTTATTGAGTGCATGGCTATTGTCCTTGGCC
TGGTGCTGCCGAGAAGGTGCTGGTGTGGGACCTGCGGTGGTGGCAGGGGT
GCTTCTAAATGCTTTGACTGGAATAGGGCATAATGCGATGCATTCGGTCC
CGAGCTGGTGGAGGTACCTGATGGACCTGTCATTGTTTTCAAGCGAGGAA
TGGAGGATTTCCCACTGTATCTCTCATCATCATTACCCTGGTAGTCAGAT
TGATTTTGAGGTGGCGGCCATTGAGCCTTTCATCCATAGTTTGTACTCGG
GACCGCCCAGTAATCAATTTTTACCATTTTACTTGTGGTGGGTATTATGC
ATTTTGGGGCCCTTCGAATTGCTAGCCCGGGGCATGAATGTATTCTTCTT
GCGTATTCAACCATTGCGATGGGAAAATTTGCTGCCGTTTATGGAGCTGG
GATTGTTAATAGTGTTTGCGGGTGGGGGAAAAGGAGGAGTAGTAGTAGGA
GGAGAAGGGTTGAAGAAGTGGGTAGTGATGCATGTGGCGGCCTCTGTTTT
GATGGGCTTGCAAGCATTGCCTCTTCATCACTCCGAGCACGCCTGGATGG
ATGGGAAAGATGACTTCTCCTCGCCTCCCTCTCTCCCTTCCGGTGAAGGC
AAGAGAGACAAGTCCCTCCTCCCTGCTTCTCCTTCCCCCCCTCTTCTCGT
CCTACAGTGCGCCCGATTGATTTTGGGCTGCATGCGCTACGAGCAACACA
GGACTACGACATTTCCGAGTTGCCATTATTAG
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Synonyms
Publications