NO07G01350.1, NO07G01350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01350.1
Unique NameNO07G01350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length927
Alignment locationchr7:424324..427228 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:424324..427228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01350.1 vs.
Match: XP_002898111.1 (conserved hypothetical protein [Phytophthora infestans T30-4]; EEY63524.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 81.6 bits (200), Expect = 4.600e-12
Identity = 77/244 (31.56%), Postives = 121/244 (49.59%), Query Frame = 0 
Query:    2 DLTKKIHVLQNDHKSNIEFFDGSKKAQREEIQHLKEEIRKLRTQL--LKKLA---------RKEGNDLKAQAMREETFLEELRDQVRTLELE-----LSGSNGAGGMDALTPLPSGAV----------HTYDQIVKHLKDERLSFDQEISSLERTVQLKEHDLEELMQLFTALREQQQLIKLQLRKRRYDHEKPQSKARESMDGSKSQGQKECEEEEDKEESEVRCVALKAKLESVQRCTRRVK 220
            DL  K+ +LQ D KSNI+  + SK+  ++ I+ LK E R LR  L  +K+ +         RK+ +DL+ +   +   LEEL+D+V+ LELE     L  +     +  L      A+           TY+QIVK LKDER+ FD +++++ER +  K+HD +EL+ L       ++ I L+L K R  HE                 +K   E+E +E+ +     +K +LE V R  +R K
Sbjct:   26 DLRDKMRLLQVDRKSNIDVLESSKQTNKDYIRQLKNENRDLRKALADMKRSSSAGAQVNKVRKQHDDLRHRVQSQTALLEELKDEVKDLELESKKPSLEDTPETRKIRMLENRLDKAMIKFNEAQSIRKTYEQIVKRLKDERIGFDNQLAAIERALAAKQHDYDELVLLSADAAHARETILLELEKARSQHE----------------DEKRHREKELREKQQY----VKIRLEMVNRVDKREK 249
The following BLAST results are available for this feature:
BLAST of NO07G01350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_002898111.14.600e-1231.56conserved hypothetical protein [Phytophthora infes... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01350NO07G01350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01350.1NO07G01350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01350.1.cds1NO07G01350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01350.1.cds2NO07G01350.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01350.1.cds3NO07G01350.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01350.1.cds4NO07G01350.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01350.1.cds5NO07G01350.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01350.1.cds6NO07G01350.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01350.1.cds7NO07G01350.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01350.1.cds8NO07G01350.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01350.1.cds9NO07G01350.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01350.1.cds10NO07G01350.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01350.1 ID=NO07G01350.1|Name=NO07G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=927bp
ATGGATTTAACGAAGAAAATCCACGTTCTGCAAAATGACCACAAATCCAA
CATTGAGTTTTTCGACGGAAGCAAGAAGGCCCAGCGAGAGGAGATTCAAC
ATTTGAAAGAAGAAATCCGAAAGCTCCGCACGCAGTTGCTGAAAAAGCTG
GCTCGCAAAGAAGGGAACGATCTCAAGGCGCAGGCCATGCGGGAGGAAAC
GTTTCTTGAGGAGCTGCGAGATCAAGTGCGAACTTTGGAATTGGAGTTGT
CGGGATCCAATGGAGCTGGGGGCATGGACGCTCTCACCCCCCTGCCTTCA
GGGGCTGTCCATACATACGACCAAATTGTCAAGCATCTCAAGGACGAAAG
GCTCAGCTTTGACCAGGAGATTTCTTCGTTGGAGCGCACTGTGCAGCTGA
AGGAGCACGACCTGGAGGAATTGATGCAGTTATTCACCGCACTACGGGAG
CAGCAACAGCTCATCAAGCTTCAGCTGCGGAAGCGACGCTATGACCATGA
GAAACCACAGAGCAAGGCCCGCGAGAGTATGGACGGCAGCAAAAGTCAGG
GGCAAAAAGAATGTGAGGAGGAAGAGGACAAGGAGGAAAGTGAAGTCCGC
TGTGTGGCGTTGAAAGCGAAATTAGAAAGCGTGCAACGATGCACCCGACG
TGTCAAGGATATGGTTGGTATCGAAGAAGCTCAAGAAGTGCTCCCCAAGC
TCGAGCAACAGATGGGAAACATGCAGCACTTGCTGAAGGCCAGAGCGGAG
AATCAGGGCCGATTGAAACCCGTCTCCAAGACAAACGAGACGCTCTCAAA
GTGGAAGTGGAGACGCGGGAATACTTGCCTCACGGCGACCAGTCGGACGG
CCTCACTGCTCAGCTGGCAAGCTGCCGTGAGCGTCTTGGTGAGGTGCAAT
CCAGGCCCTCCGAAGGTGGTGCTTTGA
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protein sequence of NO07G01350.1

>NO07G01350.1-protein ID=NO07G01350.1-protein|Name=NO07G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
MDLTKKIHVLQNDHKSNIEFFDGSKKAQREEIQHLKEEIRKLRTQLLKKL
ARKEGNDLKAQAMREETFLEELRDQVRTLELELSGSNGAGGMDALTPLPS
GAVHTYDQIVKHLKDERLSFDQEISSLERTVQLKEHDLEELMQLFTALRE
QQQLIKLQLRKRRYDHEKPQSKARESMDGSKSQGQKECEEEEDKEESEVR
CVALKAKLESVQRCTRRVKDMVGIEEAQEVLPKLEQQMGNMQHLLKARAE
NQGRLKPVSKTNETLSKWKWRRGNTCLTATSRTASLLSWQAAVSVLVRCN
PGPPKVVL*
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mRNA from alignment at chr7:424324..427228-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01350.1 ID=NO07G01350.1|Name=NO07G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2905bp|location=Sequence derived from alignment at chr7:424324..427228- (Nannochloropsis oceanica)
ATGGATTTAACGAAGAAAATCCACGTTCTGCGTAAGTCTGTATCGTCTGT
TGGACGCCCGCGCTCGCATCCCACTCACAGCCCTTCTTCCTTCCTGACCC
CTACGTACCTAGAAAATGACCACAAATCCAACATTGAGTTTTTCGACGGA
AGCAAGAAGGCCCAGCGAGAGGAGATTCAACATTTGAAAGAAGAAATCCG
AAAGCTCCGCACGCAGTTGCTGAAAAAGGTGCCCCTGGTGATTTCTGTTC
TGGCTTGCCATACTGCATCCCATGCGCCCCGGCATTCTGTTGGCTCTCTT
GAGGTTCTCATGATTTCTTCATCCACTCTAATGACCCGTATCGTCGGAAA
AGACAACCATCCCCAAGGAGGACAACAAATCCACTCAAGAGTTCCTGCGT
GCCGCGGTCTAGCTGGCTCGCAAAGAAGGGAACGATCTCAAGGCGCAGGC
CATGCGGGAGGAAACGTTTCTTGAGGAGCTGCGAGTACGTGCAGGGAAAG
ATTGATAGAAAAATAAGGCCTTGCATTCTTATGCACAATCGAGACTTATT
AGTTCTGTTTGCGGAATCTCTAGGCCCAGCACGCCAATTTCTCACGCACT
TGAATGCTTCGTGGACTGCTTGCCAAATTGATCTGAGGTTTCAGTCTCGA
TGGAACAACTAAACCATGGAAATAATGGTAATTTTACAAAATATGCAAAC
AGGATCAAGTGCGAACTTTGGAATTGGAGTTGTCGGGATCCAATGGAGCT
GGGGGCATGGACGCTCTCACCCCCCTGCCTTCAGGGGCTGGTGCGCCGGA
CGATCACATTCAAGTTATTGAATGGCCAGATCGAGAAGACGCTTAGTCGG
TGTCGTGAAGCACATTTCATAGTCCATACATACGACCAAATTGTCAAGCA
TCTCAAGGTTAGACTGTTACTACGCGGGAAAGGAGATATTTGGAAGGAAT
ACGGGACTTTGGCCCGACAGGTTCAGTACCGGGCATGGCAAGATCCGCCC
ACCCATCGGGGCATGCCAGGCCTGTCAACCAGAGGGCGACTACTTATGTT
CATGACTAGTAGCTCACATGATTAACTCTCATAATTCTTATGTAAATTCT
GCAATCTTCTTTGCAGGACGAAAGGCTCAGCTTTGACCAGGAGATTTCTT
CGTTGGAGCGCACTGTGCAGCTGAAGGAGCACGACCTGGAGGAATTGATG
CAGTTATTCAGTATGTAACGAAGTGGCAAGAATCAGAAACGGCTCTTTAG
CTTCAGGTGTACGCATGTCATACCACACATGCGACCGCGCACGACAAGCG
CACTCAGAATCTCGATACGGGAATACATACCTACATAAACCATAGATGAT
GCCAATCACGCGCAGTAAGTAGCCCAGCAACACCTTATTAGACAACGCGC
CGAGTAAGGCAAAGCCAGATCACGACGAAAAGCCGCACTACGGGAGCAGC
AACAGCTCATCAAGCTTCAGCTGCGGAAGCGACGCTATGACCATGAGAAA
CCACAGAGCAAGGCCCGCGAGAGTATGGACGGCAGCAAAAGTCAGGGGCA
AAAAGAATGTGAGGAGGAAGAGGACAAGGAGGAAAGTGAAGTCCGCTGTG
TGGCGTTGAAAGCGAAATTAGAAAGCGTGCAACGATGCACCCGACGTGTC
AAGGATATGGTTGGTATCGAAGAAGCTCAAGAAGTGCTCCCCAAGCTCGA
GCAACAGATGGGAAACATGCAGCACTTGCTGAAGGCCAGAGCGGAGAATC
AGGTAAGACAGGATTTAGCCCCACTGTGTCTCTCACACTGTTTGTGCAAT
GTACCGTGTAGCTGGAGTATTGGGCACAGCTATCACTGCACGAGCTTAAG
TGGTAAATGCCTTCGAGTAATCTCTACAACGCAAGAATAGAAATATAAAG
AGAGGGTCAAATGACAAATGAATTAACAATCATGTTTCGACGTAATCAGG
GCCGATTGAAACCCGTCTCCAAGACAAACGAGACGCTCTCAAAGTGGAAG
TGGAGACGCGGGAATACTTGCCTCACGGCGACCAGGTCCGTTGGGAGGGA
ATGGACTGAATGGGATTTGTGTGGGTAACTCTCCATTTCCTAGCTTCCCA
GCTTGATCTGCATGTGCCCAAAAGGATGAAAGTGCTACATCTGAAATTAT
TCTGGATCTTCACGCATATGACAATATTTTCCTGAACCAACATTGCGCAC
CACGCTCTCTGTGTAATAATATATATATATACACACAGTCGGACGGCCTC
ACTGCTCAGCTGGCAAGCTGCCGTGAGCGTCTTGGTGAGGTGCAATCCAG
GTACGAGCAGCTATTAATTTTGATTGCCAATCTGAAATGTGGGATAACGG
AGCATCTGTGGCAAGCGTTGGAAAAAATGACAAGCAGGTCCGCATTCCGC
CGACCACATTTAAGGAGGGCCAAGAGGTAGACGCGCTCCAGCGGATGTTG
AAAACAATAGAGAATGGCTTGGTAGAGTTGATGAGAAAGGGAGGATGAGA
AAGATACACGTAATGCAATTTAGAATTCTCATTTACAATAGAGATAGCAA
ACCCGACAAAAGGCCAACCTCCCCACCCCCCAGCACCTCGTCAAAACAGC
CTCCAGTGGCGGGTTTGATGTCAAAGGCTAGCCAAGCGACTCAACATATA
TGGTAGTACACAGACCCTCTATTTCTAGCTGGAAGCTGTCACTTTTAAGG
GGGCTTGTCGTATTCTCGCCTCTGCGTTCCATCGGGTCTTTCTCATCGCG
AGCTGTCGGACCAGCCGCGGTATTGTACGACCCCATCTTCTTCTGTCTGA
AATGACAAAGTGACCTTTTGTCCATAGCCGCCCGAAACATAACGATTCAC
TTTTGCTCATCACCATACCAAAACCTCCATAGGCCCTCCGAAGGTGGTGC
TTTGA
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Coding sequence (CDS) from alignment at chr7:424324..427228-

>NO07G01350.1 ID=NO07G01350.1|Name=NO07G01350.1|organism=Nannochloropsis oceanica|type=CDS|length=927bp|location=Sequence derived from alignment at chr7:424324..427228- (Nannochloropsis oceanica)
ATGGATTTAACGAAGAAAATCCACGTTCTGCAAAATGACCACAAATCCAA
CATTGAGTTTTTCGACGGAAGCAAGAAGGCCCAGCGAGAGGAGATTCAAC
ATTTGAAAGAAGAAATCCGAAAGCTCCGCACGCAGTTGCTGAAAAAGCTG
GCTCGCAAAGAAGGGAACGATCTCAAGGCGCAGGCCATGCGGGAGGAAAC
GTTTCTTGAGGAGCTGCGAGATCAAGTGCGAACTTTGGAATTGGAGTTGT
CGGGATCCAATGGAGCTGGGGGCATGGACGCTCTCACCCCCCTGCCTTCA
GGGGCTGTCCATACATACGACCAAATTGTCAAGCATCTCAAGGACGAAAG
GCTCAGCTTTGACCAGGAGATTTCTTCGTTGGAGCGCACTGTGCAGCTGA
AGGAGCACGACCTGGAGGAATTGATGCAGTTATTCACCGCACTACGGGAG
CAGCAACAGCTCATCAAGCTTCAGCTGCGGAAGCGACGCTATGACCATGA
GAAACCACAGAGCAAGGCCCGCGAGAGTATGGACGGCAGCAAAAGTCAGG
GGCAAAAAGAATGTGAGGAGGAAGAGGACAAGGAGGAAAGTGAAGTCCGC
TGTGTGGCGTTGAAAGCGAAATTAGAAAGCGTGCAACGATGCACCCGACG
TGTCAAGGATATGGTTGGTATCGAAGAAGCTCAAGAAGTGCTCCCCAAGC
TCGAGCAACAGATGGGAAACATGCAGCACTTGCTGAAGGCCAGAGCGGAG
AATCAGGGCCGATTGAAACCCGTCTCCAAGACAAACGAGACGCTCTCAAA
GTGGAAGTGGAGACGCGGGAATACTTGCCTCACGGCGACCAGTCGGACGG
CCTCACTGCTCAGCTGGCAAGCTGCCGTGAGCGTCTTGGTGAGGTGCAAT
CCAGGCCCTCCGAAGGTGGTGCTTTGA
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Synonyms
Publications