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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:417003..419065 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G01320.2 vs.
Match: EWM27243.1 (SAC3/GANP/Nin1/mts3/eIF-3 p25 [Nannochloropsis gaditana]) HSP 1 Score: 250.8 bits (639), Expect = 6.700e-63 Identity = 161/372 (43.28%), Postives = 216/372 (58.06%), Query Frame = 0
Query: 1 MAVRKDMILQGLSGLEARRIYQRIIRFHIFFDYVLTQQVPPTFDQHTGLGSLRSALATLFGFYKEEIIRQTRKENTSIKDTYLTVDEFLAYHILLQAHDVLLFNKGAAADGERVNGWEKVFLQVHRLLGYARRTIASRKEGEERVGMERGCQGALTQTRFALQVAKALAGGNNARFFRLCREGPQKRQEKDGCKDLLPTLVRCLLHKLLPGVRRRSLEVWSKVMFKKEKMPVGEVGRLLCLEKAENVVGFLTLHRLDVH-----RQGGSPGGGDNQGLDAWDSAAATTPSPSTSMVKKK---C-WYYEPRASSLTYLAVAQTIEDRRHIRGLLCPRQDAWVLEGRELGLE-LGEGEGEAKAAEGLAVLWEWM 363
MAVRKD+I+QGL+G A+ IY+RIIRFHI FDY+LT+QVPP FD H GL ++RS LATL F++ ++ + + +L DEFLAY+ LLQ HDVL + A +GW K+FL +R+L K E R +L +T++ALQ AKALA GN ARF RLC +E+D L RCL+ KL P RRRS+E+WSKVMF+KEKM V EV RLLC A+ F+ L L++ GG Q +AW+ +++ + T +KK C YY+PR + L ++AQT EDR++I+ LCPRQD+WVL+ +G E L EG+ A E L LW+ M
Sbjct: 6 MAVRKDIIVQGLAGSGAQAIYKRIIRFHILFDYLLTEQVPPVFDAHMGLNAVRSGLATLLDFFQNAHKHGRMADSENEVEPHL--DEFLAYYTLLQLHDVLSSGERREAGPCDGDGWTKLFLHTYRVL-----EETELKSCENSKTKLRRRDFSLPRTQWALQYAKALAAGNWARFHRLCMNWDLVLREED---RTFHVLARCLIFKLFPITRRRSMELWSKVMFQKEKMSVDEVQRLLCFGNAKQTFDFMRLFGLELSCYCTCTSSDMKEGGRKQ--NAWERPESSSTATVTGCSQKKGINCHLYYKPRDALLHSPSIAQTYEDRQNIQATLCPRQDSWVLDAANMGEENLREGK---IATEKLQELWKGM 362
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G01320.2 ID=NO07G01320.2|Name=NO07G01320.2|organism=Nannochloropsis oceanica|type=mRNA|length=1678bp ATGCTTTTGACCAAACAGCAGTCACCCTACACAGGACCGGTTCTCGCTGC AGTACAATCTCAACGCCGTGTTTGACTAAGCCTTGTTACAGAATGAAGGG GACATGTGAGAGCATGTGCAGCCCGCGGGAGCGGGAAGAAAGGCAAGCGC AGCAGGATATCAGCCCCTTCGAAGCCACGGACGCGACGCGGGCCTTGCGA CGACATTCGAGAATACTGGATCCTCAGGTGGTTACTTTTGGGAGGAAGCG GAGGCGATTATTTTCGAGGGAAGGAAAGCACGCCAATGCTCATACTTATT CATTCAAAATGAAATAGAGGGCCGTGAAGCGATATCGTCGGGCAGCGGAC GGGCGGGCTGAGACGGCCGCCGATGTGCGTTCTCTCGTTTGGTTGGAAAG AACCGTGACGCATTTGTGGCAGGTCGTTCGAGGCGTGCTTGCCGAGGCCT CGGGCCACGAAGAAGAAAAAGGGGAAGGGATCCAGGTCGAGAAAAATGTT TCATGTTATGTGGAGCTGTACGACTTTGTAAGCGATCGGTTTATGGCTGT GCGGAAAGACATGATTTTGCAGGGTTTGAGTGGACTGGAAGCAAGGAGGA TTTATCAGCGCATTATTCGGTTTCATATTTTCTTCGATTACGTTTTGACG CAGCAGGTGCCTCCCACTTTCGACCAGCATACGGGGCTGGGATCCTTGCG GTCGGCGCTCGCCACGCTCTTTGGGTTCTACAAGGAGGAAATCATCCGTC AAACACGAAAAGAAAACACCTCTATCAAGGATACATACCTTACTGTCGAC GAATTTCTAGCATACCACATCCTCCTTCAAGCCCACGACGTATTGCTGTT CAACAAGGGCGCTGCTGCTGACGGGGAGCGCGTCAACGGCTGGGAGAAAG TTTTCCTGCAAGTGCACCGACTTTTAGGGTATGCCAGGAGGACGATTGCA TCAAGAAAAGAAGGTGAGGAGAGGGTAGGGATGGAACGAGGGTGTCAGGG GGCGCTTACTCAGACGCGGTTTGCACTGCAAGTGGCCAAAGCACTGGCTG GAGGAAACAACGCAAGGTTTTTTCGGTTGTGCCGAGAAGGTCCTCAAAAA AGACAGGAGAAGGATGGATGTAAAGATTTGCTTCCTACTTTGGTGCGGTG TTTATTGCACAAGCTTCTGCCGGGCGTGCGACGGCGGAGCTTGGAAGTGT GGAGCAAGGTGATGTTCAAGAAGGAGAAGATGCCGGTGGGGGAAGTGGGA CGTCTTCTGTGTCTTGAAAAGGCCGAGAACGTGGTTGGGTTTTTGACACT TCATCGCCTGGATGTGCATAGACAGGGCGGCAGCCCTGGGGGGGGGGATA ATCAAGGGCTTGATGCCTGGGATTCTGCGGCAGCTACCACACCATCACCA TCAACGAGCATGGTTAAAAAAAAATGTTGGTACTACGAGCCGCGGGCATC CTCGTTGACGTATCTAGCTGTAGCCCAAACCATAGAAGACCGACGGCACA TACGGGGCCTGCTTTGTCCTCGACAAGACGCATGGGTGTTAGAAGGGAGG GAGCTAGGACTGGAACTTGGAGAGGGAGAGGGAGAGGCGAAGGCCGCCGA GGGGTTGGCTGTACTGTGGGAATGGATGGGGCTGGTATAATGAAATCAAT GTAAAGCAATGGCAAGATGATGGGCAGT back to topprotein sequence of NO07G01320.2 >NO07G01320.2-protein ID=NO07G01320.2-protein|Name=NO07G01320.2|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp MAVRKDMILQGLSGLEARRIYQRIIRFHIFFDYVLTQQVPPTFDQHTGLG SLRSALATLFGFYKEEIIRQTRKENTSIKDTYLTVDEFLAYHILLQAHDV LLFNKGAAADGERVNGWEKVFLQVHRLLGYARRTIASRKEGEERVGMERG CQGALTQTRFALQVAKALAGGNNARFFRLCREGPQKRQEKDGCKDLLPTL VRCLLHKLLPGVRRRSLEVWSKVMFKKEKMPVGEVGRLLCLEKAENVVGF LTLHRLDVHRQGGSPGGGDNQGLDAWDSAAATTPSPSTSMVKKKCWYYEP RASSLTYLAVAQTIEDRRHIRGLLCPRQDAWVLEGRELGLELGEGEGEAK AAEGLAVLWEWMGLV* back to topmRNA from alignment at chr7:417003..419065+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G01320.2 ID=NO07G01320.2|Name=NO07G01320.2|organism=Nannochloropsis oceanica|type=mRNA|length=2063bp|location=Sequence derived from alignment at chr7:417003..419065+ (Nannochloropsis oceanica) ATGCTTTTGACCAAACAGCAGTCACCCTACACAGGACCGGTTCTCGCTGC
AGTACAATCTCAACGCCGTGTTTGACTAAGCCTTGTTACAGAATGAAGGT
AAGTCTAGCGTGAAATAAACAAATACGGTCCTCAAGCAAGCCTCATTCGT
ACCCCATCTCAATCCTACTTTCCAAGGGGACATGTGAGAGCATGTGCAGC
CCGCGGGAGCGGGAAGAAAGGCAAGCGCAGCAGGATATCAGCCCCTTCGA
AGCCACGGACGCGACGCGGGCCTTGCGACGACATTCGAGAATACTGGATC
CTCAGGTGGTTACTTTTGGGAGGAAGCGGAGGCGATTATTTTCGAGGGAA
GGAAAGCACGCCAATGCTCATACTTATTCATTCAAAATGAAATAGAGGGC
CGTGAAGCGATATCGTCGGGCAGCGGACGGGCGGGCTGAGACGGCCGCCG
ATGTGCGTTCTCTCGTTTGGTTGGAAAGAACCGTGACGCATTTGTGGCAG
GTCGTTCGAGGCGTGCTTGCCGAGGCCTCGGGCCACGAAGAAGAAAAAGG
GGAAGGGATCCAGGTCGAGAAAAATGTTTCATGTTATGTGGAGCTGTACG
ACTTTGTAAGCGATCGGTTTATGGCTGTGCGGAAAGACATGATTTTGCAG
GGTTTGAGTGGACTGGAAGCAAGGAGGATTTATCAGCGCATTATTCGGTT
TCATATTTTCTTCGATTACGTTTTGACGCAGCAGGTAAACGAGAAGTTTC
GACGGGGGGGATGTCTTTGTTGCTCCATGCCATTATATGTTATGCTGTGC
GTCTACGCCGAGTTTGTACTGATATTTTCCTACTGTGCGCTCTTCTTCTC
ATTCCTACTAGGTGCCTCCCACTTTCGACCAGCATACGGGGTAAGCAACC
TCTTACGCCGGAAATACGGGAATCTTCTCCCTATTTTCTTTTTTCACGCC
CTTCTTCTCTTGGTACTTGAAACATAGGCTGGGATCCTTGCGGTCGGCGC
TCGCCACGCTCTTTGGGTTCTACAAGGAGGTAAGACGAAAACCAGCACAA
AAGCCATTTTCCATCCGTTTTCCCCACTTCCTTGTCTCACGCACACGACC
CACCACCCTTGTCGTTACCCAGGAAATCATCCGTCAAACACGAAAAGAAA
ACACCTCTATCAAGGATACATACCTTACTGTCGACGAATTTCTAGCATAC
CACATCCTCCTTCAAGCCCACGACGTATTGCTGTTCAACAAGGGCGCTGC
TGCTGACGGGGAGCGCGTCAACGGCTGGGAGAAAGTTTTCCTGCAAGTGC
ACCGACTTTTAGGGTATGCCAGGAGGACGATTGCATCAAGAAAAGAAGGT
GAGGAGAGGGTAGGGATGGAACGAGGGTGTCAGGGGGCGCTTACTCAGAC
GCGGTTTGCACTGCAAGTGGCCAAAGCACTGGCTGGAGGAAACAACGCAA
GGTTTTTTCGGTTGTGCCGAGAAGGTCCTCAAAAAAGACAGGAGAAGGAT
GGATGTAAAGATTTGCTTCCTACTTTGGTGCGGTGTTTATTGCACAAGCT
TCTGCCGGGCGTGCGACGGCGGAGCTTGGAAGTGTGGAGCAAGGTGATGT
TCAAGAAGGAGAAGATGCCGGTGGGGGAAGTGGGACGTCTTCTGTGTCTT
GAAAAGGCCGAGAACGTGGTTGGGTTTTTGACACTTCATCGCCTGGATGT
GCATAGACAGGGCGGCAGCCCTGGGGGGGGGGATAATCAAGGGCTTGATG
CCTGGGATTCTGCGGCAGCTACCACACCATCACCATCAACGAGCATGGTT
AAAAAAAAATGTTGGTACTACGAGCCGCGGGCATCCTCGTTGACGTATCT
AGCTGTAGCCCAAACCATAGAAGACCGACGGCACATACGGGGCCTGCTTT
GTCCTCGACAAGACGCATGGGTGTTAGAAGGGAGGGAGCTAGGACTGGAA
CTTGGAGAGGGAGAGGGAGAGGCGAAGGCCGCCGAGGGGTTGGCTGTACT
GTGGGAATGGATGGGGCTGGTATAATGAAATCAATGTAAAGCAATGGCAA
GATGATGGGCAGT back to topCoding sequence (CDS) from alignment at chr7:417003..419065+ >NO07G01320.2 ID=NO07G01320.2|Name=NO07G01320.2|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at chr7:417003..419065+ (Nannochloropsis oceanica) ATGGCTGTGCGGAAAGACATGATTTTGCAGGGTTTGAGTGGACTGGAAGC AAGGAGGATTTATCAGCGCATTATTCGGTTTCATATTTTCTTCGATTACG TTTTGACGCAGCAGGTGCCTCCCACTTTCGACCAGCATACGGGGCTGGGA TCCTTGCGGTCGGCGCTCGCCACGCTCTTTGGGTTCTACAAGGAGGAAAT CATCCGTCAAACACGAAAAGAAAACACCTCTATCAAGGATACATACCTTA CTGTCGACGAATTTCTAGCATACCACATCCTCCTTCAAGCCCACGACGTA TTGCTGTTCAACAAGGGCGCTGCTGCTGACGGGGAGCGCGTCAACGGCTG GGAGAAAGTTTTCCTGCAAGTGCACCGACTTTTAGGGTATGCCAGGAGGA CGATTGCATCAAGAAAAGAAGGTGAGGAGAGGGTAGGGATGGAACGAGGG TGTCAGGGGGCGCTTACTCAGACGCGGTTTGCACTGCAAGTGGCCAAAGC ACTGGCTGGAGGAAACAACGCAAGGTTTTTTCGGTTGTGCCGAGAAGGTC CTCAAAAAAGACAGGAGAAGGATGGATGTAAAGATTTGCTTCCTACTTTG GTGCGGTGTTTATTGCACAAGCTTCTGCCGGGCGTGCGACGGCGGAGCTT GGAAGTGTGGAGCAAGGTGATGTTCAAGAAGGAGAAGATGCCGGTGGGGG AAGTGGGACGTCTTCTGTGTCTTGAAAAGGCCGAGAACGTGGTTGGGTTT TTGACACTTCATCGCCTGGATGTGCATAGACAGGGCGGCAGCCCTGGGGG GGGGGATAATCAAGGGCTTGATGCCTGGGATTCTGCGGCAGCTACCACAC CATCACCATCAACGAGCATGGTTAAAAAAAAATGTTGGTACTACGAGCCG CGGGCATCCTCGTTGACGTATCTAGCTGTAGCCCAAACCATAGAAGACCG ACGGCACATACGGGGCCTGCTTTGTCCTCGACAAGACGCATGGGTGTTAG AAGGGAGGGAGCTAGGACTGGAACTTGGAGAGGGAGAGGGAGAGGCGAAG GCCGCCGAGGGGTTGGCTGTACTGTGGGAATGGATGGGGCTGGTATAA back to top
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