NO07G01320.1, NO07G01320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01320.1
Unique NameNO07G01320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1588
Alignment locationchr7:417003..419065 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:417003..419065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01320.1 vs.
Match: EWM27243.1 (SAC3/GANP/Nin1/mts3/eIF-3 p25 [Nannochloropsis gaditana])

HSP 1 Score: 259.6 bits (662), Expect = 1.900e-65
Identity = 165/377 (43.77%), Postives = 221/377 (58.62%), Query Frame = 0 
Query:  116 VSDRFMAVRKDMILQGLSGLEARRIYQRIIRFHIFFDYVLTQQVPPTFDQHTGLGSLRSALATLFGFYKEEIIRQTRKENTSIKDTYLTVDEFLAYHILLQAHDVLLFNKGAAADGERVNGWEKVFLQVHRLLGYARRTIASRKEGEERVGMERGCQGALTQTRFALQVAKALAGGNNARFFRLCREGPQKRQEKDGCKDLLPTLVRCLLHKLLPGVRRRSLEVWSKVMFKKEKMPVGEVGRLLCLEKAENVVGFLTLHRLDVH-----RQGGSPGGGDNQGLDAWDSAAATTPSPSTSMVKKK---C-WYYEPRASSLTYLAVAQTIEDRRHIRGLLCPRQDAWVLEGRELGLE-LGEGEGEAKAAEGLAVLWEWM 483
            +SDRFMAVRKD+I+QGL+G  A+ IY+RIIRFHI FDY+LT+QVPP FD H GL ++RS LATL  F++         ++ +  + +L  DEFLAY+ LLQ HDVL   +   A     +GW K+FL  +R+L          K  E      R    +L +T++ALQ AKALA GN ARF RLC       +E+D        L RCL+ KL P  RRRS+E+WSKVMF+KEKM V EV RLLC   A+    F+ L  L++             GG  Q  +AW+   +++ +  T   +KK   C  YY+PR + L   ++AQT EDR++I+  LCPRQD+WVL+   +G E L EG+    A E L  LW+ M
Sbjct:    1 MSDRFMAVRKDIIVQGLAGSGAQAIYKRIIRFHILFDYLLTEQVPPVFDAHMGLNAVRSGLATLLDFFQNAHKHGRMADSENEVEPHL--DEFLAYYTLLQLHDVLSSGERREAGPCDGDGWTKLFLHTYRVL-----EETELKSCENSKTKLRRRDFSLPRTQWALQYAKALAAGNWARFHRLCMNWDLVLREED---RTFHVLARCLIFKLFPITRRRSMELWSKVMFQKEKMSVDEVQRLLCFGNAKQTFDFMRLFGLELSCYCTCTSSDMKEGGRKQ--NAWERPESSSTATVTGCSQKKGINCHLYYKPRDALLHSPSIAQTYEDRQNIQATLCPRQDSWVLDAANMGEENLREGK---IATEKLQELWKGM 362
The following BLAST results are available for this feature:
BLAST of NO07G01320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27243.11.900e-6543.77SAC3/GANP/Nin1/mts3/eIF-3 p25 [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01320NO07G01320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01320.1NO07G01320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01320.1.cds1NO07G01320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01320.1.cds2NO07G01320.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01320.1.cds3NO07G01320.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01320.1.cds4NO07G01320.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01320.1.cds5NO07G01320.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01320.1.cds6NO07G01320.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01320.1 ID=NO07G01320.1|Name=NO07G01320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1588bp
ATGCTTTTGACCAAACAGCAGTCACCCTACACAGGACCGGTTCTCGCTGC
AGTACAATCTCAACGCCGTGTTTGACTAAGCCTTGTTACAGAATGAAGGG
GACATGTGAGAGCATGTGCAGCCCGCGGGAGCGGGAAGAAAGGCAAGCGC
AGCAGGATATCAGCCCCTTCGAAGCCACGGACGCGACGCGGGCCTTGCGA
CGACATTCGAGAATACTGGATCCTCAGAGGGCCGTGAAGCGATATCGTCG
GGCAGCGGACGGGCGGGCTGAGACGGCCGCCGATGTGCGTTCTCTCGTTT
GGTTGGAAAGAACCGTGACGCATTTGTGGCAGGTCGTTCGAGGCGTGCTT
GCCGAGGCCTCGGGCCACGAAGAAGAAAAAGGGGAAGGGATCCAGGTCGA
GAAAAATGTTTCATGTTATGTGGAGCTGTACGACTTTGTAAGCGATCGGT
TTATGGCTGTGCGGAAAGACATGATTTTGCAGGGTTTGAGTGGACTGGAA
GCAAGGAGGATTTATCAGCGCATTATTCGGTTTCATATTTTCTTCGATTA
CGTTTTGACGCAGCAGGTGCCTCCCACTTTCGACCAGCATACGGGGCTGG
GATCCTTGCGGTCGGCGCTCGCCACGCTCTTTGGGTTCTACAAGGAGGAA
ATCATCCGTCAAACACGAAAAGAAAACACCTCTATCAAGGATACATACCT
TACTGTCGACGAATTTCTAGCATACCACATCCTCCTTCAAGCCCACGACG
TATTGCTGTTCAACAAGGGCGCTGCTGCTGACGGGGAGCGCGTCAACGGC
TGGGAGAAAGTTTTCCTGCAAGTGCACCGACTTTTAGGGTATGCCAGGAG
GACGATTGCATCAAGAAAAGAAGGTGAGGAGAGGGTAGGGATGGAACGAG
GGTGTCAGGGGGCGCTTACTCAGACGCGGTTTGCACTGCAAGTGGCCAAA
GCACTGGCTGGAGGAAACAACGCAAGGTTTTTTCGGTTGTGCCGAGAAGG
TCCTCAAAAAAGACAGGAGAAGGATGGATGTAAAGATTTGCTTCCTACTT
TGGTGCGGTGTTTATTGCACAAGCTTCTGCCGGGCGTGCGACGGCGGAGC
TTGGAAGTGTGGAGCAAGGTGATGTTCAAGAAGGAGAAGATGCCGGTGGG
GGAAGTGGGACGTCTTCTGTGTCTTGAAAAGGCCGAGAACGTGGTTGGGT
TTTTGACACTTCATCGCCTGGATGTGCATAGACAGGGCGGCAGCCCTGGG
GGGGGGGATAATCAAGGGCTTGATGCCTGGGATTCTGCGGCAGCTACCAC
ACCATCACCATCAACGAGCATGGTTAAAAAAAAATGTTGGTACTACGAGC
CGCGGGCATCCTCGTTGACGTATCTAGCTGTAGCCCAAACCATAGAAGAC
CGACGGCACATACGGGGCCTGCTTTGTCCTCGACAAGACGCATGGGTGTT
AGAAGGGAGGGAGCTAGGACTGGAACTTGGAGAGGGAGAGGGAGAGGCGA
AGGCCGCCGAGGGGTTGGCTGTACTGTGGGAATGGATGGGGCTGGTATAA
TGAAATCAATGTAAAGCAATGGCAAGATGATGGGCAGT
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protein sequence of NO07G01320.1

>NO07G01320.1-protein ID=NO07G01320.1-protein|Name=NO07G01320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MKGTCESMCSPREREERQAQQDISPFEATDATRALRRHSRILDPQRAVKR
YRRAADGRAETAADVRSLVWLERTVTHLWQVVRGVLAEASGHEEEKGEGI
QVEKNVSCYVELYDFVSDRFMAVRKDMILQGLSGLEARRIYQRIIRFHIF
FDYVLTQQVPPTFDQHTGLGSLRSALATLFGFYKEEIIRQTRKENTSIKD
TYLTVDEFLAYHILLQAHDVLLFNKGAAADGERVNGWEKVFLQVHRLLGY
ARRTIASRKEGEERVGMERGCQGALTQTRFALQVAKALAGGNNARFFRLC
REGPQKRQEKDGCKDLLPTLVRCLLHKLLPGVRRRSLEVWSKVMFKKEKM
PVGEVGRLLCLEKAENVVGFLTLHRLDVHRQGGSPGGGDNQGLDAWDSAA
ATTPSPSTSMVKKKCWYYEPRASSLTYLAVAQTIEDRRHIRGLLCPRQDA
WVLEGRELGLELGEGEGEAKAAEGLAVLWEWMGLV*
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mRNA from alignment at chr7:417003..419065+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01320.1 ID=NO07G01320.1|Name=NO07G01320.1|organism=Nannochloropsis oceanica|type=mRNA|length=2063bp|location=Sequence derived from alignment at chr7:417003..419065+ (Nannochloropsis oceanica)
ATGCTTTTGACCAAACAGCAGTCACCCTACACAGGACCGGTTCTCGCTGC
AGTACAATCTCAACGCCGTGTTTGACTAAGCCTTGTTACAGAATGAAGGT
AAGTCTAGCGTGAAATAAACAAATACGGTCCTCAAGCAAGCCTCATTCGT
ACCCCATCTCAATCCTACTTTCCAAGGGGACATGTGAGAGCATGTGCAGC
CCGCGGGAGCGGGAAGAAAGGCAAGCGCAGCAGGATATCAGCCCCTTCGA
AGCCACGGACGCGACGCGGGCCTTGCGACGACATTCGAGAATACTGGATC
CTCAGGTGGTTACTTTTGGGAGGAAGCGGAGGCGATTATTTTCGAGGGAA
GGAAAGCACGCCAATGCTCATACTTATTCATTCAAAATGAAATAGAGGGC
CGTGAAGCGATATCGTCGGGCAGCGGACGGGCGGGCTGAGACGGCCGCCG
ATGTGCGTTCTCTCGTTTGGTTGGAAAGAACCGTGACGCATTTGTGGCAG
GTCGTTCGAGGCGTGCTTGCCGAGGCCTCGGGCCACGAAGAAGAAAAAGG
GGAAGGGATCCAGGTCGAGAAAAATGTTTCATGTTATGTGGAGCTGTACG
ACTTTGTAAGCGATCGGTTTATGGCTGTGCGGAAAGACATGATTTTGCAG
GGTTTGAGTGGACTGGAAGCAAGGAGGATTTATCAGCGCATTATTCGGTT
TCATATTTTCTTCGATTACGTTTTGACGCAGCAGGTAAACGAGAAGTTTC
GACGGGGGGGATGTCTTTGTTGCTCCATGCCATTATATGTTATGCTGTGC
GTCTACGCCGAGTTTGTACTGATATTTTCCTACTGTGCGCTCTTCTTCTC
ATTCCTACTAGGTGCCTCCCACTTTCGACCAGCATACGGGGTAAGCAACC
TCTTACGCCGGAAATACGGGAATCTTCTCCCTATTTTCTTTTTTCACGCC
CTTCTTCTCTTGGTACTTGAAACATAGGCTGGGATCCTTGCGGTCGGCGC
TCGCCACGCTCTTTGGGTTCTACAAGGAGGTAAGACGAAAACCAGCACAA
AAGCCATTTTCCATCCGTTTTCCCCACTTCCTTGTCTCACGCACACGACC
CACCACCCTTGTCGTTACCCAGGAAATCATCCGTCAAACACGAAAAGAAA
ACACCTCTATCAAGGATACATACCTTACTGTCGACGAATTTCTAGCATAC
CACATCCTCCTTCAAGCCCACGACGTATTGCTGTTCAACAAGGGCGCTGC
TGCTGACGGGGAGCGCGTCAACGGCTGGGAGAAAGTTTTCCTGCAAGTGC
ACCGACTTTTAGGGTATGCCAGGAGGACGATTGCATCAAGAAAAGAAGGT
GAGGAGAGGGTAGGGATGGAACGAGGGTGTCAGGGGGCGCTTACTCAGAC
GCGGTTTGCACTGCAAGTGGCCAAAGCACTGGCTGGAGGAAACAACGCAA
GGTTTTTTCGGTTGTGCCGAGAAGGTCCTCAAAAAAGACAGGAGAAGGAT
GGATGTAAAGATTTGCTTCCTACTTTGGTGCGGTGTTTATTGCACAAGCT
TCTGCCGGGCGTGCGACGGCGGAGCTTGGAAGTGTGGAGCAAGGTGATGT
TCAAGAAGGAGAAGATGCCGGTGGGGGAAGTGGGACGTCTTCTGTGTCTT
GAAAAGGCCGAGAACGTGGTTGGGTTTTTGACACTTCATCGCCTGGATGT
GCATAGACAGGGCGGCAGCCCTGGGGGGGGGGATAATCAAGGGCTTGATG
CCTGGGATTCTGCGGCAGCTACCACACCATCACCATCAACGAGCATGGTT
AAAAAAAAATGTTGGTACTACGAGCCGCGGGCATCCTCGTTGACGTATCT
AGCTGTAGCCCAAACCATAGAAGACCGACGGCACATACGGGGCCTGCTTT
GTCCTCGACAAGACGCATGGGTGTTAGAAGGGAGGGAGCTAGGACTGGAA
CTTGGAGAGGGAGAGGGAGAGGCGAAGGCCGCCGAGGGGTTGGCTGTACT
GTGGGAATGGATGGGGCTGGTATAATGAAATCAATGTAAAGCAATGGCAA
GATGATGGGCAGT
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Coding sequence (CDS) from alignment at chr7:417003..419065+

>NO07G01320.1 ID=NO07G01320.1|Name=NO07G01320.1|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at chr7:417003..419065+ (Nannochloropsis oceanica)
ATGAAGGGGACATGTGAGAGCATGTGCAGCCCGCGGGAGCGGGAAGAAAG
GCAAGCGCAGCAGGATATCAGCCCCTTCGAAGCCACGGACGCGACGCGGG
CCTTGCGACGACATTCGAGAATACTGGATCCTCAGAGGGCCGTGAAGCGA
TATCGTCGGGCAGCGGACGGGCGGGCTGAGACGGCCGCCGATGTGCGTTC
TCTCGTTTGGTTGGAAAGAACCGTGACGCATTTGTGGCAGGTCGTTCGAG
GCGTGCTTGCCGAGGCCTCGGGCCACGAAGAAGAAAAAGGGGAAGGGATC
CAGGTCGAGAAAAATGTTTCATGTTATGTGGAGCTGTACGACTTTGTAAG
CGATCGGTTTATGGCTGTGCGGAAAGACATGATTTTGCAGGGTTTGAGTG
GACTGGAAGCAAGGAGGATTTATCAGCGCATTATTCGGTTTCATATTTTC
TTCGATTACGTTTTGACGCAGCAGGTGCCTCCCACTTTCGACCAGCATAC
GGGGCTGGGATCCTTGCGGTCGGCGCTCGCCACGCTCTTTGGGTTCTACA
AGGAGGAAATCATCCGTCAAACACGAAAAGAAAACACCTCTATCAAGGAT
ACATACCTTACTGTCGACGAATTTCTAGCATACCACATCCTCCTTCAAGC
CCACGACGTATTGCTGTTCAACAAGGGCGCTGCTGCTGACGGGGAGCGCG
TCAACGGCTGGGAGAAAGTTTTCCTGCAAGTGCACCGACTTTTAGGGTAT
GCCAGGAGGACGATTGCATCAAGAAAAGAAGGTGAGGAGAGGGTAGGGAT
GGAACGAGGGTGTCAGGGGGCGCTTACTCAGACGCGGTTTGCACTGCAAG
TGGCCAAAGCACTGGCTGGAGGAAACAACGCAAGGTTTTTTCGGTTGTGC
CGAGAAGGTCCTCAAAAAAGACAGGAGAAGGATGGATGTAAAGATTTGCT
TCCTACTTTGGTGCGGTGTTTATTGCACAAGCTTCTGCCGGGCGTGCGAC
GGCGGAGCTTGGAAGTGTGGAGCAAGGTGATGTTCAAGAAGGAGAAGATG
CCGGTGGGGGAAGTGGGACGTCTTCTGTGTCTTGAAAAGGCCGAGAACGT
GGTTGGGTTTTTGACACTTCATCGCCTGGATGTGCATAGACAGGGCGGCA
GCCCTGGGGGGGGGGATAATCAAGGGCTTGATGCCTGGGATTCTGCGGCA
GCTACCACACCATCACCATCAACGAGCATGGTTAAAAAAAAATGTTGGTA
CTACGAGCCGCGGGCATCCTCGTTGACGTATCTAGCTGTAGCCCAAACCA
TAGAAGACCGACGGCACATACGGGGCCTGCTTTGTCCTCGACAAGACGCA
TGGGTGTTAGAAGGGAGGGAGCTAGGACTGGAACTTGGAGAGGGAGAGGG
AGAGGCGAAGGCCGCCGAGGGGTTGGCTGTACTGTGGGAATGGATGGGGC
TGGTATAA
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Synonyms
Publications