NO07G01060.1, NO07G01060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01060.1
Unique NameNO07G01060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1305
Alignment locationchr7:341262..342566 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:341262..342566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01060.1 vs.
Match: EWM27280.1 (Lipopolysaccharide-modifying protein [Nannochloropsis gaditana])

HSP 1 Score: 523.1 bits (1346), Expect = 8.300e-145
Identity = 260/428 (60.75%), Postives = 315/428 (73.60%), Query Frame = 0 
Query:    1 MVSITPPPAYEGLPTSVHVHSSPHRPSRKSLWQDWRWILLIAISSLGAMIVVHHVGARVDKHLATRRFTARLQAQAPSAEAYCPEYTPILQQALAPYEIVGRTVSSVAMKEVDDFVRAGDGMRMHISAKNGKVATTPKVNRVDKYRTGNLLENIQLAQQLFGKFPFDFEFWYNAGDCPALPRELFRSNEGVLLPPLGYATTTGHYDVSIPYSTQAIWKEDEDLSTLSELVHKHPWAGKAKRGVWRGSTTGAVRVEESNVWDLPRAVLVNVSLHNPKLLDARFTACKHCESRVSSLLEKAGYGYAPFFTFPEQFKYQALIDVDGNSWSSRFAQLLSINSVVFKQETKYVEFFRPLVKPYRHYIPVKGDLTDLASKLDKMLGEEGRKNTTAQLKLREIGAESTRLYIQSLVPSKQLCYLHRVLDAYSRVY 429
            MVS+T P     LP       S  +  R + WQ   W+LL+ +SSLG++ +V+  G RVD+HLA RRF  RLQ++  SA  YCPEYTP+L QAL  Y+   R+ S  A   VD F+    GMR+ +SA NG+V+  P V R D+ R  +LL NIQLAQ+LFG FPFDFEFWYN+GD PALPR +F S+EGVLLPPLGY TT GHYDVSIPY  QA+W E+ ++ TL  LV  HPW+ K  +GVWRGSTTGA  V+ SN W LPRAVLVNVSL NP LLDARFTACKHC    +   E AGYGYAPF +  EQF+YQ LIDVDGNSWSSRFA LLSINS V KQET+YVEFFRPL++PY+HY+PVK DL+DL + L + L  +  KN+TA ++L+E+GAESTRLY++SLVPSKQLCYLHRVL+ YSRV+
Sbjct:    1 MVSLTSP-----LPRVYPSSRSSSQACRWTAWQGREWLLLLVVSSLGSVALVYQFGGRVDQHLAVRRFALRLQSRTTSAAEYCPEYTPVLDQALHTYKNPKRSFSRKAQSRVDAFIAGTGGMRVAVSADNGRVSMLP-VKR-DRQRIADLLANIQLAQRLFGNFPFDFEFWYNSGDMPALPRAVFPSDEGVLLPPLGYTTTDGHYDVSIPYLRQAVWSEEREMHTLHSLVQSHPWSQKLPKGVWRGSTTGAAAVDASNCWTLPRAVLVNVSLENPGLLDARFTACKHCSRDTAVAYETAGYGYAPFLSVQEQFRYQVLIDVDGNSWSSRFATLLSINSAVVKQETQYVEFFRPLLQPYKHYLPVKDDLSDLEALLKERL--DASKNSTAHMELQEMGAESTRLYMRSLVPSKQLCYLHRVLEVYSRVF 419
The following BLAST results are available for this feature:
BLAST of NO07G01060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27280.18.300e-14560.75Lipopolysaccharide-modifying protein [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01060NO07G01060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01060.1NO07G01060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01060.1.cds1NO07G01060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01060.1 ID=NO07G01060.1|Name=NO07G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1305bp
ATGGTCAGCATCACCCCCCCACCCGCCTACGAGGGCCTGCCCACCTCCGT
GCACGTCCACAGCAGTCCACATCGCCCTTCACGAAAAAGCCTTTGGCAAG
ACTGGCGATGGATCCTCCTCATCGCAATATCTTCCCTGGGCGCGATGATT
GTTGTGCACCATGTAGGGGCGCGTGTTGACAAACACCTGGCAACGCGCCG
GTTTACCGCTCGCTTGCAAGCCCAAGCACCGAGTGCCGAGGCGTACTGCC
CCGAGTACACCCCCATCCTTCAACAAGCCCTCGCTCCGTACGAAATTGTG
GGTCGGACTGTGTCCAGTGTAGCAATGAAAGAGGTGGATGACTTTGTCCG
GGCTGGGGACGGAATGCGCATGCATATCTCAGCTAAAAATGGCAAGGTCG
CCACTACTCCCAAAGTCAATCGTGTAGATAAGTACCGCACAGGCAACCTG
CTGGAGAATATTCAATTAGCCCAACAACTCTTTGGGAAGTTCCCGTTTGA
TTTTGAGTTCTGGTATAATGCGGGCGACTGTCCTGCGTTGCCTCGTGAGC
TATTCCGTTCGAATGAAGGCGTCCTGCTGCCGCCCTTGGGTTATGCAACT
ACCACGGGGCATTATGACGTTTCAATTCCATATTCGACGCAGGCGATATG
GAAGGAAGACGAGGACCTGTCGACGTTGTCGGAGTTGGTGCACAAGCACC
CGTGGGCTGGCAAGGCGAAGCGGGGTGTGTGGAGGGGAAGTACGACCGGA
GCAGTTCGAGTGGAGGAGTCGAATGTGTGGGACTTACCCCGCGCGGTGTT
GGTAAATGTATCCCTGCATAATCCCAAACTGCTCGATGCGCGTTTCACGG
CGTGCAAGCATTGTGAGTCGCGTGTGTCGTCTTTATTAGAAAAGGCTGGG
TATGGATATGCCCCTTTCTTTACCTTTCCCGAGCAGTTTAAGTACCAAGC
GTTGATTGACGTGGACGGTAATTCGTGGTCGAGCCGGTTTGCACAACTTC
TGAGTATAAATTCTGTTGTTTTCAAACAAGAGACCAAATATGTTGAGTTT
TTCCGGCCCTTGGTGAAGCCGTACCGGCACTATATCCCCGTGAAAGGCGA
CTTGACAGATCTGGCTTCGAAGCTTGATAAAATGCTCGGGGAGGAAGGTA
GAAAAAACACCACGGCCCAGCTGAAACTCAGGGAAATCGGTGCGGAGAGC
ACGAGGTTATATATTCAGTCGCTGGTCCCATCGAAGCAGTTGTGTTATTT
ACATCGAGTTTTGGATGCCTATAGTCGAGTATATGCCCAGGCTGTGTTCA
GTTGA
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protein sequence of NO07G01060.1

>NO07G01060.1-protein ID=NO07G01060.1-protein|Name=NO07G01060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp
MVSITPPPAYEGLPTSVHVHSSPHRPSRKSLWQDWRWILLIAISSLGAMI
VVHHVGARVDKHLATRRFTARLQAQAPSAEAYCPEYTPILQQALAPYEIV
GRTVSSVAMKEVDDFVRAGDGMRMHISAKNGKVATTPKVNRVDKYRTGNL
LENIQLAQQLFGKFPFDFEFWYNAGDCPALPRELFRSNEGVLLPPLGYAT
TTGHYDVSIPYSTQAIWKEDEDLSTLSELVHKHPWAGKAKRGVWRGSTTG
AVRVEESNVWDLPRAVLVNVSLHNPKLLDARFTACKHCESRVSSLLEKAG
YGYAPFFTFPEQFKYQALIDVDGNSWSSRFAQLLSINSVVFKQETKYVEF
FRPLVKPYRHYIPVKGDLTDLASKLDKMLGEEGRKNTTAQLKLREIGAES
TRLYIQSLVPSKQLCYLHRVLDAYSRVYAQAVFS*
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mRNA from alignment at chr7:341262..342566+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01060.1 ID=NO07G01060.1|Name=NO07G01060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1305bp|location=Sequence derived from alignment at chr7:341262..342566+ (Nannochloropsis oceanica)
ATGGTCAGCATCACCCCCCCACCCGCCTACGAGGGCCTGCCCACCTCCGT
GCACGTCCACAGCAGTCCACATCGCCCTTCACGAAAAAGCCTTTGGCAAG
ACTGGCGATGGATCCTCCTCATCGCAATATCTTCCCTGGGCGCGATGATT
GTTGTGCACCATGTAGGGGCGCGTGTTGACAAACACCTGGCAACGCGCCG
GTTTACCGCTCGCTTGCAAGCCCAAGCACCGAGTGCCGAGGCGTACTGCC
CCGAGTACACCCCCATCCTTCAACAAGCCCTCGCTCCGTACGAAATTGTG
GGTCGGACTGTGTCCAGTGTAGCAATGAAAGAGGTGGATGACTTTGTCCG
GGCTGGGGACGGAATGCGCATGCATATCTCAGCTAAAAATGGCAAGGTCG
CCACTACTCCCAAAGTCAATCGTGTAGATAAGTACCGCACAGGCAACCTG
CTGGAGAATATTCAATTAGCCCAACAACTCTTTGGGAAGTTCCCGTTTGA
TTTTGAGTTCTGGTATAATGCGGGCGACTGTCCTGCGTTGCCTCGTGAGC
TATTCCGTTCGAATGAAGGCGTCCTGCTGCCGCCCTTGGGTTATGCAACT
ACCACGGGGCATTATGACGTTTCAATTCCATATTCGACGCAGGCGATATG
GAAGGAAGACGAGGACCTGTCGACGTTGTCGGAGTTGGTGCACAAGCACC
CGTGGGCTGGCAAGGCGAAGCGGGGTGTGTGGAGGGGAAGTACGACCGGA
GCAGTTCGAGTGGAGGAGTCGAATGTGTGGGACTTACCCCGCGCGGTGTT
GGTAAATGTATCCCTGCATAATCCCAAACTGCTCGATGCGCGTTTCACGG
CGTGCAAGCATTGTGAGTCGCGTGTGTCGTCTTTATTAGAAAAGGCTGGG
TATGGATATGCCCCTTTCTTTACCTTTCCCGAGCAGTTTAAGTACCAAGC
GTTGATTGACGTGGACGGTAATTCGTGGTCGAGCCGGTTTGCACAACTTC
TGAGTATAAATTCTGTTGTTTTCAAACAAGAGACCAAATATGTTGAGTTT
TTCCGGCCCTTGGTGAAGCCGTACCGGCACTATATCCCCGTGAAAGGCGA
CTTGACAGATCTGGCTTCGAAGCTTGATAAAATGCTCGGGGAGGAAGGTA
GAAAAAACACCACGGCCCAGCTGAAACTCAGGGAAATCGGTGCGGAGAGC
ACGAGGTTATATATTCAGTCGCTGGTCCCATCGAAGCAGTTGTGTTATTT
ACATCGAGTTTTGGATGCCTATAGTCGAGTATATGCCCAGGCTGTGTTCA
GTTGA
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Coding sequence (CDS) from alignment at chr7:341262..342566+

>NO07G01060.1 ID=NO07G01060.1|Name=NO07G01060.1|organism=Nannochloropsis oceanica|type=CDS|length=1305bp|location=Sequence derived from alignment at chr7:341262..342566+ (Nannochloropsis oceanica)
ATGGTCAGCATCACCCCCCCACCCGCCTACGAGGGCCTGCCCACCTCCGT
GCACGTCCACAGCAGTCCACATCGCCCTTCACGAAAAAGCCTTTGGCAAG
ACTGGCGATGGATCCTCCTCATCGCAATATCTTCCCTGGGCGCGATGATT
GTTGTGCACCATGTAGGGGCGCGTGTTGACAAACACCTGGCAACGCGCCG
GTTTACCGCTCGCTTGCAAGCCCAAGCACCGAGTGCCGAGGCGTACTGCC
CCGAGTACACCCCCATCCTTCAACAAGCCCTCGCTCCGTACGAAATTGTG
GGTCGGACTGTGTCCAGTGTAGCAATGAAAGAGGTGGATGACTTTGTCCG
GGCTGGGGACGGAATGCGCATGCATATCTCAGCTAAAAATGGCAAGGTCG
CCACTACTCCCAAAGTCAATCGTGTAGATAAGTACCGCACAGGCAACCTG
CTGGAGAATATTCAATTAGCCCAACAACTCTTTGGGAAGTTCCCGTTTGA
TTTTGAGTTCTGGTATAATGCGGGCGACTGTCCTGCGTTGCCTCGTGAGC
TATTCCGTTCGAATGAAGGCGTCCTGCTGCCGCCCTTGGGTTATGCAACT
ACCACGGGGCATTATGACGTTTCAATTCCATATTCGACGCAGGCGATATG
GAAGGAAGACGAGGACCTGTCGACGTTGTCGGAGTTGGTGCACAAGCACC
CGTGGGCTGGCAAGGCGAAGCGGGGTGTGTGGAGGGGAAGTACGACCGGA
GCAGTTCGAGTGGAGGAGTCGAATGTGTGGGACTTACCCCGCGCGGTGTT
GGTAAATGTATCCCTGCATAATCCCAAACTGCTCGATGCGCGTTTCACGG
CGTGCAAGCATTGTGAGTCGCGTGTGTCGTCTTTATTAGAAAAGGCTGGG
TATGGATATGCCCCTTTCTTTACCTTTCCCGAGCAGTTTAAGTACCAAGC
GTTGATTGACGTGGACGGTAATTCGTGGTCGAGCCGGTTTGCACAACTTC
TGAGTATAAATTCTGTTGTTTTCAAACAAGAGACCAAATATGTTGAGTTT
TTCCGGCCCTTGGTGAAGCCGTACCGGCACTATATCCCCGTGAAAGGCGA
CTTGACAGATCTGGCTTCGAAGCTTGATAAAATGCTCGGGGAGGAAGGTA
GAAAAAACACCACGGCCCAGCTGAAACTCAGGGAAATCGGTGCGGAGAGC
ACGAGGTTATATATTCAGTCGCTGGTCCCATCGAAGCAGTTGTGTTATTT
ACATCGAGTTTTGGATGCCTATAGTCGAGTATATGCCCAGGCTGTGTTCA
GTTGA
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Synonyms
Publications