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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr7 | genome | chr7:310757..313839 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G00960.1 vs.
Match: EWM27274.1 (lmbr1-like conserved region-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 804.3 bits (2076), Expect = 2.300e-229 Identity = 404/522 (77.39%), Postives = 462/522 (88.51%), Query Frame = 0
Query: 1 MGVSWFLLLCIGLMIVILLIINVYMLVHWSHPDDKNEAYFPKALVIFGLLLAESCVLALPLDVANNSINIGCAQGWVESCGGLNMGLFWKIMYVLVTLLCVVVLPFAIFYYEGNDGLTESKGQAACTAIKYTAVCLFASGLVLGVCFFFIGRFRLPVTEIPASMADLYTHPLATPMNATLNVEEASFAADVTNASFRTSMTFQSSFVVYMVALLSFVGWIFFSVFGGVGLAALPMDLITTFTARPKAMSAEELAHEQLLLQTRVADLIEVGQLVQSERKSRRTAGGNFLTRTRAERNERSTMKSFKQMVYLLEDDFGKFSAAKNMASYNPLWPIAMLLMGVVASLLTIMWVLHVVLYMFFSPPQSQFLNQYFIQFDEWFPLFGVLSVALFVLYLLFCVVAGNFKIGVRFLFVELHPMKINGTYMNSFLFNLILILLCTFPIVEFSTSAFAGYARFSNIYQFFGVQMRYLIFFSYFYTNHVFVGILVGFCILSTGYFLMTPRQKVIKVEDVKQTLRRRRKISK 523
MGVSWFLLLCIG+MIV+LL INVYMLVHWSHPDDKNEAYFPKALVIFGLLLAE+CVLA+PLDVANNS NIGC QGWV+SCGGL+M LFW+IMYVL+T+LCV +LPFAIFYYE +DGLTE KGQA C A+KYTAVCLFAS LV+G+C+FFIGR RLPV E+PAS+ DL H L TP NATL+ E + A + SFRT ++FQS+F+VYM+AL+SFVGW F++FGGVGLAALPMDLIT FT RPK M AEELAHEQLLLQ RVADLIEVG LVQSERK RR+ GGNFL RT AER+ER+T+ FKQMVY+LE D+ KF AAK+M YNPLWPI MLL+G++AS+LT+MWVLHV++YMFF PP SQFLNQYFIQFDEWFPLFGV+SVA+FVLYLLFCVVAGNFK+GVRFL VELHPMKINGTYMNSFLFNLILILLCTFP+VEFSTSAFAGYARFSNIY FFGVQ+RYLIFFS FYTN++FV +L+GFC L+T YF+ TPR K ++ E+VKQ+LRRRRKIS+
Sbjct: 1 MGVSWFLLLCIGVMIVVLLAINVYMLVHWSHPDDKNEAYFPKALVIFGLLLAEACVLAVPLDVANNSSNIGCTQGWVQSCGGLDMSLFWQIMYVLITVLCVAILPFAIFYYEDDDGLTEGKGQAFCGAVKYTAVCLFASALVVGLCYFFIGRVRLPVLEVPASVVDLTVHSLGTPRNATLDSSEIALAGALMKDSFRTKISFQSTFIVYMIALVSFVGWFLFAIFGGVGLAALPMDLITAFTTRPKPMPAEELAHEQLLLQARVADLIEVGHLVQSERKDRRSKGGNFLARTVAERSERNTLLKFKQMVYMLESDYEKFRAAKDMGKYNPLWPIGMLLLGMLASILTVMWVLHVIVYMFFFPPLSQFLNQYFIQFDEWFPLFGVVSVAIFVLYLLFCVVAGNFKLGVRFLCVELHPMKINGTYMNSFLFNLILILLCTFPVVEFSTSAFAGYARFSNIYHFFGVQIRYLIFFSIFYTNNIFVYMLLGFCFLATLYFIKTPRDKPVEAEEVKQSLRRRRKISR 522
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G00960.1 ID=NO07G00960.1|Name=NO07G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=2167bp
GAACAGGACGACGATGGGCCAGACAAGCATGTTAATTCATGTCCTCCCGA
CTTTCGTTGGCTATTCCACTACGCAAACCCACACATCCGCACAGGGAATG
CTCACCATCATGTATCGAACATTTCTCTTGAGTTTGTCTATTCCGTGGGC
ATTGATCATGCTGAGAGTCGTGATCCAAGTCGTCCGACAATTTGACTTGC
CCGCCCGTAAGCGCGTCCTTTTTAAGCCCAAACGACACCTGCACCTCTCA
CCCTGCTGCACTGAACCACAGCGTTCGACACCAAACCACAGGTAACACTC
TAGAGCCTGCGCCTAAATCCTTCGGTCTCCCTTCCTGGCCCTTGGTTCCA
CTCTGTGCCCTCGTTAGCAGCATGGGTGTGTCCTGGTTTTTGCTGCTATG
CATCGGCTTGATGATTGTCATCTTGCTCATAATCAACGTGTACATGCTCG
TGCACTGGTCACATCCAGACGACAAGAATGAGGCATACTTTCCCAAGGCC
CTGGTGATTTTCGGCCTTCTGCTCGCCGAATCCTGCGTTCTAGCTCTACC
CCTCGATGTAGCTAATAACAGCATTAACATTGGGTGTGCCCAGGGATGGG
TGGAAAGCTGCGGTGGCCTCAACATGGGCCTGTTTTGGAAAATTATGTAT
GTCCTTGTCACCTTGCTGTGCGTGGTTGTTCTGCCGTTTGCCATCTTTTA
CTATGAGGGCAACGACGGTCTGACGGAGAGCAAAGGCCAGGCAGCCTGCA
CAGCGATCAAGTACACCGCTGTCTGTCTCTTCGCCTCGGGGCTTGTCCTG
GGTGTATGCTTCTTCTTCATCGGACGCTTCCGCCTCCCTGTAACGGAAAT
CCCCGCCAGTATGGCCGACCTCTATACCCACCCTCTCGCTACGCCCATGA
ATGCAACCCTGAATGTGGAAGAAGCCAGCTTTGCAGCTGATGTGACCAAC
GCGAGTTTTAGGACCTCGATGACCTTCCAATCATCCTTTGTTGTCTATAT
GGTTGCCCTCCTCTCCTTCGTGGGTTGGATCTTCTTTTCTGTTTTCGGAG
GGGTGGGCCTGGCGGCGTTGCCCATGGACCTAATCACGACATTTACGGCT
CGGCCGAAGGCAATGTCAGCGGAAGAACTGGCCCATGAGCAACTGTTGTT
GCAGACACGGGTGGCGGATCTGATCGAGGTCGGCCAACTCGTCCAATCCG
AACGAAAAAGCCGTCGCACAGCAGGCGGAAACTTTTTAACGCGCACCCGT
GCAGAGCGCAACGAGCGCAGCACGATGAAGAGCTTCAAACAGATGGTGTA
TTTACTCGAGGACGACTTCGGAAAATTCAGCGCCGCGAAAAATATGGCGA
GCTACAACCCCTTGTGGCCGATTGCAATGCTCCTGATGGGAGTTGTGGCG
TCACTCTTGACGATCATGTGGGTGCTCCATGTGGTGCTCTACATGTTCTT
TTCCCCGCCGCAGTCCCAATTTTTGAACCAGTACTTCATTCAGTTCGATG
AGTGGTTCCCGCTGTTTGGGGTGCTGTCCGTGGCGCTCTTCGTCCTCTAC
CTCCTCTTTTGTGTCGTGGCAGGGAACTTTAAGATTGGAGTGCGGTTCCT
GTTTGTGGAGTTGCACCCAATGAAGATCAATGGCACGTACATGAACTCAT
TCCTCTTCAACCTCATTCTGATCCTGTTGTGTACCTTTCCGATTGTCGAG
TTTTCCACTTCAGCGTTTGCAGGCTACGCGCGCTTCAGTAACATCTATCA
ATTTTTTGGGGTGCAAATGAGGTACTTGATCTTCTTCTCCTATTTCTACA
CCAACCATGTCTTTGTGGGCATCCTCGTAGGATTTTGCATCTTGTCCACG
GGTTATTTTTTAATGACCCCGCGACAGAAAGTGATTAAGGTGGAAGACGT
CAAGCAGACGTTGCGGCGGAGACGCAAGATTTCCAAATAAGTAGAACTAA
AAATTATAAATGATGATTTGGGATGTATTCCTTCATGTATATGTGTGCGG
ATTTTTGATGTGGTGGGTTGGTGAGGGAACGAAAAGAGAGACCGTGATGG
TGCCTTGATGTTTGCCTGCGAAACCCGCGGCCATCCACGCAAAGCTTTGA
GTTAAAAGAAGCAAGAAGACGAGAAATTGAAAGGACACGACTCGAAAAGT
AGATGGAAACTAAATGC back to topprotein sequence of NO07G00960.1 >NO07G00960.1-protein ID=NO07G00960.1-protein|Name=NO07G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=523bp
MGVSWFLLLCIGLMIVILLIINVYMLVHWSHPDDKNEAYFPKALVIFGLL
LAESCVLALPLDVANNSINIGCAQGWVESCGGLNMGLFWKIMYVLVTLLC
VVVLPFAIFYYEGNDGLTESKGQAACTAIKYTAVCLFASGLVLGVCFFFI
GRFRLPVTEIPASMADLYTHPLATPMNATLNVEEASFAADVTNASFRTSM
TFQSSFVVYMVALLSFVGWIFFSVFGGVGLAALPMDLITTFTARPKAMSA
EELAHEQLLLQTRVADLIEVGQLVQSERKSRRTAGGNFLTRTRAERNERS
TMKSFKQMVYLLEDDFGKFSAAKNMASYNPLWPIAMLLMGVVASLLTIMW
VLHVVLYMFFSPPQSQFLNQYFIQFDEWFPLFGVLSVALFVLYLLFCVVA
GNFKIGVRFLFVELHPMKINGTYMNSFLFNLILILLCTFPIVEFSTSAFA
GYARFSNIYQFFGVQMRYLIFFSYFYTNHVFVGILVGFCILSTGYFLMTP
RQKVIKVEDVKQTLRRRRKISK* back to topmRNA from alignment at chr7:310757..313839+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G00960.1 ID=NO07G00960.1|Name=NO07G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=3083bp|location=Sequence derived from alignment at chr7:310757..313839+ (Nannochloropsis oceanica)
GAACAGGACGACGATGGGCCAGACAAGCATGTTAATTCATGTCCTCCCGA
CTTTCGTTGGCTATTCCACTACGCAAACCCACACATCCGCACAGGGAATG
CTCACCATCATGTATCGAACATTTCTCTTGAGTTTGTCTATTCCGTGGGC
ATTGATCATGCTGAGAGTCGTGATCCAAGTCGTCCGACAATTTGACTTGC
CCGCCCGTAAGCGCGTCCTTTTTAAGCCCAAACGACACCTGCACCTCTCA
CCCTGCTGCACTGAACCACAGCGTTCGACACCAAACCACAGGTAACACTC
TAGAGCCTGCGCCTAAATCCTTCGGTCTCCCTTCCTGGCCCTTGGTTCCA
CTCTGTGCCCTCGTTAGCAGCATGGGTGTGTCCTGGTTTTTGCTGCTATG
CATCGGCTTGATGATTGTCATCTTGCTCATAATCAACGTGTACATGCTCG
TGCACTGGTCACATCCAGACGACAAGAATGAGGCATACTTTCCCAAGGCC
CTGGTGGTACGTAGATCGATGGAAAGGGTTTGACGGGAAGGCCCATGTCA
TGCCGTGTGTGTCGAGTACAAATGCTGGACTGCCGCGCTCTCCACTTCCC
GCCAGCCGGATGCATTCGTCCGGATGATTTTGTTCATTCTACGTCGTGAT
GAGTCCTGTGCTCATTTTCCACCTCTACATGCTTGTACATTGCGCCATTC
TCTAGCTGTAGTGCTCCCATTTTCCATCCGTCGCCGACAACCATCCCTCC
CGCCCTCATCTCTTCCCTCCTCAACTCCTCACCAAAGATTTTCGGCCTTC
TGCTCGCCGAATCCTGCGTTCTAGCTCTACCCCTCGATGTAGCTAATAAC
AGCATTAACATTGGGTGTGCCCAGGGATGGGTGGAAAGCTGCGGTGGCCT
CAACATGGGCCTGTTTTGGAAAATTATGTATGTCCTTGTCACCTTGCTGT
GCGTGGTTGTTCTGCCGTTTGCCATCTTTTACTATGAGGTATGCGTTTTT
TGAAGAGAGAGAGGAAGAGAGAGAGTGTGCGTGTGTGTAGGGAAAGGAGA
GAGGGACGGAGGTAGGGAGAGCGGTGGTGGACATGTCGCCTTTCGTGGGC
TTTCATTGGTTTCCCCCCTTCGAGCAGAAGACGATGTGCGTCTCCTTTCC
CCCCCTCTTCTTCCATGTTTGTCCGACATAGAAATCAAAGTAAATTCACT
TTTTAAAATACATTCAATCACCTTATCCCTTCAGGGCAACGACGGTCTGA
CGGAGAGCAAAGGCCAGGCAGCCTGCACAGCGATCAAGTACACCGCTGTC
TGTCTCTTCGCCTCGGGGCTTGTCCTGGGTGTATGCTTCTTCTTCGTACG
TACCTTCCACTGTATAGCTTTTTTTTCGCAAACGACATTCTATCCTGCCC
TCTTGCTCTCGCATACGCACTCTCTGCCCATGATCTTAAAAAGTAGCCTC
GTAGCTCATCCCCCCTCCCTTCCTCCCTCCCTCCCTTCCTTCCTTCCTCC
TTCCAGATCGGACGCTTCCGCCTCCCTGTAACGGAAATCCCCGCCAGTAT
GGCCGACCTCTATACCCACCCTCTCGCTACGCCCATGAATGCAACCCTGA
ATGTGGAAGAAGCCAGCTTTGCAGCTGATGTGACCAACGCGAGTTTTAGG
ACCTCGATGACCTTCCAATCATCCTTTGTTGTCTATATGGTTGCCCTCCT
CTCCTTCGTGGGTTGGATCTTCTTTTCTGTTTTCGGAGGGGTGGGCCTGG
CGGCGTTGCCCATGGACCTAATCACGACATTTACGGCTCGGCCGAAGGCA
ATGTCAGCGGAAGAACTGGCCCATGAGCAACTGTTGTTGCAGACACGGGT
GGCGGATCTGATCGAGGTGAAGACGGGGGGAGGGAGAGAGGGAGGGAGGG
ATTGAGAGGAGGGACGAGGAAGGTTTACATGGTGCTCGGAAAATACTGAC
ACAATTTGAGGGTGCTTTTCATGTGCCCTGCTAACAGTCTCCCTCGTCCT
CGTCTCGCCTTCCATTCTCTCACACACGCAAACACGTAGACTCAACTCAC
CCATACCATCCCTTTTCCCCTCCCTCCCTCCTTCCCTCCCTCAGGTCGGC
CAACTCGTCCAATCCGAACGAAAAAGCCGTCGCACAGCAGGCGGAAACTT
TTTAACGCGCACCCGTGCAGAGCGCAACGAGCGCAGCACGATGAAGAGCT
TCAAACAGATGGTGTATTTACTCGAGGACGACTTCGGAAAATTCAGCGCC
GCGAAAAATATGGCGAGCTACAACCCCTTGTGGCCGATTGCAATGCTCCT
GATGGGAGTTGTGGCGTCACTCTTGACGATCATGTGGGTGCTCCATGTGG
TGCTCTACATGTTCTTTTCCCCGCCGCAGTCCCAATTTTTGAACCAGTAC
TTCATTCAGTTCGATGAGTGGTTCCCGCTGTTTGGGGTGCTGTCCGTGGC
GCTCTTCGTCCTCTACCTCCTCTTTTGTGTCGTGGCAGGGAACTTTAAGA
TTGGAGTGCGGTTCCTGTTTGTGGAGTTGCACCCAATGAAGATCAATGGC
ACGTACATGAACTCATTCCTCTTCAACCTCATTCTGATCCTGTTGTGTAC
CTTTCCGATTGTCGAGTTTTCCACTTCAGCGTTTGCAGGCTACGCGCGCT
TCAGTAACATCTATCAATTTTTTGGGGTGCAAATGAGGTACTTGATCTTC
TTCTCCTATTTCTACACCAACCATGTCTTTGTGGGCATCCTCGTAGGATT
TTGCATCTTGTCCACGGGTTATTTTTTAATGACCCCGCGACAGAAAGTGA
TTAAGGTGGAAGACGTCAAGCAGACGTTGCGGCGGAGACGCAAGATTTCC
AAATAAGTAGAACTAAAAATTATAAATGATGATTTGGGATGTATTCCTTC
ATGTATATGTGTGCGGATTTTTGATGTGGTGGGTTGGTGAGGGAACGAAA
AGAGAGACCGTGATGGTGCCTTGATGTTTGCCTGCGAAACCCGCGGCCAT
CCACGCAAAGCTTTGAGTTAAAAGAAGCAAGAAGACGAGAAATTGAAAGG
ACACGACTCGAAAAGTAGATGGAAACTAAATGC back to topCoding sequence (CDS) from alignment at chr7:310757..313839+ >NO07G00960.1 ID=NO07G00960.1|Name=NO07G00960.1|organism=Nannochloropsis oceanica|type=CDS|length=1569bp|location=Sequence derived from alignment at chr7:310757..313839+ (Nannochloropsis oceanica)
ATGGGTGTGTCCTGGTTTTTGCTGCTATGCATCGGCTTGATGATTGTCAT
CTTGCTCATAATCAACGTGTACATGCTCGTGCACTGGTCACATCCAGACG
ACAAGAATGAGGCATACTTTCCCAAGGCCCTGGTGATTTTCGGCCTTCTG
CTCGCCGAATCCTGCGTTCTAGCTCTACCCCTCGATGTAGCTAATAACAG
CATTAACATTGGGTGTGCCCAGGGATGGGTGGAAAGCTGCGGTGGCCTCA
ACATGGGCCTGTTTTGGAAAATTATGTATGTCCTTGTCACCTTGCTGTGC
GTGGTTGTTCTGCCGTTTGCCATCTTTTACTATGAGGGCAACGACGGTCT
GACGGAGAGCAAAGGCCAGGCAGCCTGCACAGCGATCAAGTACACCGCTG
TCTGTCTCTTCGCCTCGGGGCTTGTCCTGGGTGTATGCTTCTTCTTCATC
GGACGCTTCCGCCTCCCTGTAACGGAAATCCCCGCCAGTATGGCCGACCT
CTATACCCACCCTCTCGCTACGCCCATGAATGCAACCCTGAATGTGGAAG
AAGCCAGCTTTGCAGCTGATGTGACCAACGCGAGTTTTAGGACCTCGATG
ACCTTCCAATCATCCTTTGTTGTCTATATGGTTGCCCTCCTCTCCTTCGT
GGGTTGGATCTTCTTTTCTGTTTTCGGAGGGGTGGGCCTGGCGGCGTTGC
CCATGGACCTAATCACGACATTTACGGCTCGGCCGAAGGCAATGTCAGCG
GAAGAACTGGCCCATGAGCAACTGTTGTTGCAGACACGGGTGGCGGATCT
GATCGAGGTCGGCCAACTCGTCCAATCCGAACGAAAAAGCCGTCGCACAG
CAGGCGGAAACTTTTTAACGCGCACCCGTGCAGAGCGCAACGAGCGCAGC
ACGATGAAGAGCTTCAAACAGATGGTGTATTTACTCGAGGACGACTTCGG
AAAATTCAGCGCCGCGAAAAATATGGCGAGCTACAACCCCTTGTGGCCGA
TTGCAATGCTCCTGATGGGAGTTGTGGCGTCACTCTTGACGATCATGTGG
GTGCTCCATGTGGTGCTCTACATGTTCTTTTCCCCGCCGCAGTCCCAATT
TTTGAACCAGTACTTCATTCAGTTCGATGAGTGGTTCCCGCTGTTTGGGG
TGCTGTCCGTGGCGCTCTTCGTCCTCTACCTCCTCTTTTGTGTCGTGGCA
GGGAACTTTAAGATTGGAGTGCGGTTCCTGTTTGTGGAGTTGCACCCAAT
GAAGATCAATGGCACGTACATGAACTCATTCCTCTTCAACCTCATTCTGA
TCCTGTTGTGTACCTTTCCGATTGTCGAGTTTTCCACTTCAGCGTTTGCA
GGCTACGCGCGCTTCAGTAACATCTATCAATTTTTTGGGGTGCAAATGAG
GTACTTGATCTTCTTCTCCTATTTCTACACCAACCATGTCTTTGTGGGCA
TCCTCGTAGGATTTTGCATCTTGTCCACGGGTTATTTTTTAATGACCCCG
CGACAGAAAGTGATTAAGGTGGAAGACGTCAAGCAGACGTTGCGGCGGAG
ACGCAAGATTTCCAAATAA back to top
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