NO07G00840.1, NO07G00840.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00840.1
Unique NameNO07G00840.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1045
Alignment locationchr7:280992..282270 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:280992..282270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G00840.1 vs.
Match: EWM27339.1 (Nicotinamide N-methyltransferase, putative [Nannochloropsis gaditana])

HSP 1 Score: 289.3 bits (739), Expect = 1.200e-74
Identity = 145/241 (60.17%), Postives = 178/241 (73.86%), Query Frame = 0 
Query:    8 ERQRHQKE---DECNPSPPPSTTLKHVFLGQALAIETRWDVGIGGGVWTTGLLVCEYFERHAAFFTGVFRGKGIIEIGSGTGLVGLSLASNSQFQPCQVVVTDQKDHLGLIQRNVDVNATKLHAPLLVQEFDWLRKKE---EGENVALLSFSPFDVIVGTDVAYCKELYAPVVHALEQVAGPESLILLGVTRTDTGPLFFQLLHNAGFDYCLMPTAVGDGGEGSCVEAGGFALLSVVRRRG 243
            E+++H+ +   +EC+P+    + + H    Q L +ET+W+VGIGGG+WTTGLL+CEYF R+A FF+ V  GK IIEIGSGTGLV LSLA+N+ F+P ++VVTDQKDHL LI+RN+  N  K+ AP+ VQEF+WL+ KE       V  L   PFDV+VGTDVAYC+ELY PVVHAL +++GP SLILLGVTRTDT P FFQLL   GFDYCL P A    GE SC  AGGFALLSVVRR G
Sbjct:   24 EQEQHEAQRVSNECSPALSSLSCVSHTPSSQELTLETQWNVGIGGGIWTTGLLLCEYFGRNATFFSKVLYGKRIIEIGSGTGLVALSLATNALFKPQEIVVTDQKDHLDLIERNICANIAKMKAPIRVQEFNWLKDKETKNTDSKVKALCALPFDVVVGTDVAYCQELYGPVVHALCRLSGPHSLILLGVTRTDTNPRFFQLLQEEGFDYCLTPVA---DGESSCTVAGGFALLSVVRRVG 261
The following BLAST results are available for this feature:
BLAST of NO07G00840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27339.11.200e-7460.17Nicotinamide N-methyltransferase, putative [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00840NO07G00840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00840.1NO07G00840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00840.1.cds1NO07G00840.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00840.1.cds2NO07G00840.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00840.1 ID=NO07G00840.1|Name=NO07G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1045bp
ACTGTGAATATAAGCTGCTCTTAAGGGTGGTGATGTAGGTCAGCGCGTTA
AATGTACGGTGATTTCTTTCTCTTCTTGTGCGCAACCTGATGCACGCAAG
TCGAGGCTGGAAGAGGAGATCTCTTTTGTCCCACCGTCCAAGGACTCCAC
GCGATCTTATGTCTCTGATCATGACATATAACCCTAATACAATATAAATG
CAGACAGGAGATGGAGGACGGCGTCGTCGATGAGCGGCAAAGGCACCAAA
AGGAGGACGAATGCAACCCATCGCCTCCTCCGTCCACCACCCTGAAGCAT
GTTTTCTTGGGACAGGCGCTAGCGATCGAAACACGATGGGATGTCGGCAT
TGGGGGCGGCGTTTGGACAACAGGTTTGCTGGTCTGTGAGTACTTTGAGC
GGCATGCGGCTTTCTTCACCGGGGTTTTTCGGGGCAAGGGCATCATCGAA
ATCGGCTCTGGTACTGGCCTAGTGGGACTTTCTCTGGCCAGCAATTCCCA
GTTTCAACCGTGCCAAGTAGTGGTAACCGATCAAAAAGACCACCTGGGGC
TCATCCAACGTAACGTGGATGTCAACGCGACCAAGCTCCATGCCCCACTG
CTTGTGCAGGAGTTCGACTGGTTAAGAAAGAAGGAGGAAGGGGAAAACGT
GGCATTGCTCTCCTTTTCCCCTTTTGACGTGATCGTTGGGACAGATGTTG
CATATTGCAAGGAACTCTACGCGCCGGTCGTGCATGCTTTGGAGCAAGTC
GCGGGGCCAGAAAGCTTAATTTTATTGGGCGTCACACGCACAGACACAGG
GCCTTTGTTTTTCCAGTTATTGCACAATGCGGGATTTGATTACTGCCTGA
TGCCCACGGCGGTGGGGGATGGAGGGGAGGGGAGTTGTGTGGAGGCCGGG
GGGTTCGCGTTGTTGAGCGTGGTTAGGCGGCGAGGACGAGGGGAGAAGGA
AGTAGGAAAAGATTACTACAATTGTATGATTTAATGACTCAACAGAATGG
ATAGAAAAAAAGGTGAAAGAAGGAAAGCAAAGTACTGACCCAGCG
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protein sequence of NO07G00840.1

>NO07G00840.1-protein ID=NO07G00840.1-protein|Name=NO07G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MEDGVVDERQRHQKEDECNPSPPPSTTLKHVFLGQALAIETRWDVGIGGG
VWTTGLLVCEYFERHAAFFTGVFRGKGIIEIGSGTGLVGLSLASNSQFQP
CQVVVTDQKDHLGLIQRNVDVNATKLHAPLLVQEFDWLRKKEEGENVALL
SFSPFDVIVGTDVAYCKELYAPVVHALEQVAGPESLILLGVTRTDTGPLF
FQLLHNAGFDYCLMPTAVGDGGEGSCVEAGGFALLSVVRRRGRGEKEVGK
DYYNCMI*
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mRNA from alignment at chr7:280992..282270-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00840.1 ID=NO07G00840.1|Name=NO07G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1279bp|location=Sequence derived from alignment at chr7:280992..282270- (Nannochloropsis oceanica)
ACTGTGAATATAAGCTGCTCTTAAGGGTGGTGATGTAGGTCAGCGCGTTA
AATGTACGGTGATTTCTTTCTCTTCTTGTGCGCAACCTGATGCACGCAAG
TCGAGGCTGGAAGAGGAGATCTCTTTTGTCCCACCGTCCAAGGACTCCAC
GCGATCTTATGTCTCTGATCATGACATATAACCCTAATACAATATAAATG
CAGACAGGAGATGGAGGACGGCGTCGTCGATGAGCGGCAAAGGCACCAAA
AGGAGGACGAATGCAACCCATCGCCTCCTCCGTCCACCACCCTGAAGCAT
GTTTTCTTGGGACAGGCGCTAGCGATCGAAACACGATGGGATGTCGGCAT
TGGGGGCGGCGTTTGGACAACAGGTTTGCTGGTCTGTGAGTACTTTGAGC
GGCATGCGGCTTTCTTCACCGGGGTTTTTCGGGGCAAGGGCATCATGTGA
GTAGTCTTGTATGAGGAGATCGACATTCCTGCGTGAGGTTGAGAATGAGA
AACACGGCAGGCACAAGAGAAATCATGGACGGAACAAAGGAGGGTGATTA
AGGAAGGATGTTGTTGAGTTGATTCACGAGAGTCATGTGTGCTCTCCTGT
CGTGCCAATACAACTTTTTTCTCTCAATGTACCCTTCCTCACACACTCAC
TTCTCCCCTTCCTAAACTCACACCCCACAGCGAAATCGGCTCTGGTACTG
GCCTAGTGGGACTTTCTCTGGCCAGCAATTCCCAGTTTCAACCGTGCCAA
GTAGTGGTAACCGATCAAAAAGACCACCTGGGGCTCATCCAACGTAACGT
GGATGTCAACGCGACCAAGCTCCATGCCCCACTGCTTGTGCAGGAGTTCG
ACTGGTTAAGAAAGAAGGAGGAAGGGGAAAACGTGGCATTGCTCTCCTTT
TCCCCTTTTGACGTGATCGTTGGGACAGATGTTGCATATTGCAAGGAACT
CTACGCGCCGGTCGTGCATGCTTTGGAGCAAGTCGCGGGGCCAGAAAGCT
TAATTTTATTGGGCGTCACACGCACAGACACAGGGCCTTTGTTTTTCCAG
TTATTGCACAATGCGGGATTTGATTACTGCCTGATGCCCACGGCGGTGGG
GGATGGAGGGGAGGGGAGTTGTGTGGAGGCCGGGGGGTTCGCGTTGTTGA
GCGTGGTTAGGCGGCGAGGACGAGGGGAGAAGGAAGTAGGAAAAGATTAC
TACAATTGTATGATTTAATGACTCAACAGAATGGATAGAAAAAAAGGTGA
AAGAAGGAAAGCAAAGTACTGACCCAGCG
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Coding sequence (CDS) from alignment at chr7:280992..282270-

>NO07G00840.1 ID=NO07G00840.1|Name=NO07G00840.1|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at chr7:280992..282270- (Nannochloropsis oceanica)
ATGGAGGACGGCGTCGTCGATGAGCGGCAAAGGCACCAAAAGGAGGACGA
ATGCAACCCATCGCCTCCTCCGTCCACCACCCTGAAGCATGTTTTCTTGG
GACAGGCGCTAGCGATCGAAACACGATGGGATGTCGGCATTGGGGGCGGC
GTTTGGACAACAGGTTTGCTGGTCTGTGAGTACTTTGAGCGGCATGCGGC
TTTCTTCACCGGGGTTTTTCGGGGCAAGGGCATCATCGAAATCGGCTCTG
GTACTGGCCTAGTGGGACTTTCTCTGGCCAGCAATTCCCAGTTTCAACCG
TGCCAAGTAGTGGTAACCGATCAAAAAGACCACCTGGGGCTCATCCAACG
TAACGTGGATGTCAACGCGACCAAGCTCCATGCCCCACTGCTTGTGCAGG
AGTTCGACTGGTTAAGAAAGAAGGAGGAAGGGGAAAACGTGGCATTGCTC
TCCTTTTCCCCTTTTGACGTGATCGTTGGGACAGATGTTGCATATTGCAA
GGAACTCTACGCGCCGGTCGTGCATGCTTTGGAGCAAGTCGCGGGGCCAG
AAAGCTTAATTTTATTGGGCGTCACACGCACAGACACAGGGCCTTTGTTT
TTCCAGTTATTGCACAATGCGGGATTTGATTACTGCCTGATGCCCACGGC
GGTGGGGGATGGAGGGGAGGGGAGTTGTGTGGAGGCCGGGGGGTTCGCGT
TGTTGAGCGTGGTTAGGCGGCGAGGACGAGGGGAGAAGGAAGTAGGAAAA
GATTACTACAATTGTATGATTTAA
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Synonyms
Publications