NO07G00690.1, NO07G00690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00690.1
Unique NameNO07G00690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1281
Alignment locationchr7:247227..248507 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:247227..248507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO07G00690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00690NO07G00690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00690.1NO07G00690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00690.1.cds1NO07G00690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00690.1 ID=NO07G00690.1|Name=NO07G00690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1281bp
GGCAAAGGATTAACCAGACCTTACCTATGCATGGATGGGGGAGCGGGCGG
GGAGGCCGATGATTTTCGTAGGAATGGCCTCCATAGGACTCACGGCCGAC
CCTTTATCATAACCACCACTCTCATACAGAGGTCATTAAGTAAATTGCGG
TGCGCTGCGTAGGGCTCTGGCGTGGACGCACGGCTTCGACGAGCATATGT
ATATGTATCGTCATATGTCCGTTGTGCATTGCATGCTTCTTGATTTTTCC
TGGCCAAAAAGAACGTGCCCTTGTCACCCAAACTCCAAGGTTAAAAGGCG
CCCTTATCATTTATTCCACATGTTGCAAAACATTTTCTCTTTGACCTGAA
TAAAAATTAAAGGTTCGCAACCCCAAGCGATAATATAGGCTAACCCCCTA
CACTTTCCATTTCTTTATGTGCACATTTCACCGCCGAATTTAATGCTGCA
GACTGTCTAACCCTTCAGCTTCTCTAATTCCTGCATTTAGAGATACTATC
TAACACCGACAGGCACAATAAAAAATGGCGCGGCCGTCGCCTTTCCGATT
GCTTTCCCTTCTCCTCTGGTTCGTTCTGGCCTCCACCTCCACCGCATCCA
CCTCCACTGCCCAATCTTATCGCAAGAAATCCACCGTAGATGAATGCTTC
GGCAAATTCACGCCGGCGCGCACACCTTTAAAAATTCCCACGGGCTCAGC
CGCAAACCCGCAAGGCCATTCCAGACTCCGCGCTTTCACCCGTGACACTC
TCCATGAACTTGGCCACACTATTCGGGAGCATCCCGCGCAGACCGCAATC
CTCTCTCTCTTAGTCTACATCAAACTTCATCATCCCGAGCTCGCCAAGAA
CCAAAAGCATTTCTTTCAGGTCAATGACATGGAGATGAAGGCGTTGGGTT
TGCTGTGGTTAATTTGTAGTTTGGACGAGTCGTGGTATGTCGAGGCAGCA
AAGTGGCTCAAAGGCGTTTGGACGCAAGCCATGAGCCTGCTGCGAAAGCT
AGTGCATCGACTGGTGGGATGGTGGAAGGGCACGGCGACGAAGGGATGAT
ATGATATTTGTGGTCGGGGTCTGATACGAGGTGACAGGCCGTCTGCCAGG
GCAGGCTTTGCTTTTGGCTGCGCTGCGTCTTATCTTTGTTGTGGAAGCCG
AGTTAGTCTCCGAGGAATACATCAATCGATCCATACGCGCCAGTTTAAAT
TGAGCAGGCGGCTCGTGTAGGCGTTCGGATTTGATTTTTTTTGGGGGGGG
AAACGGAAAAGGGAAAAAAATGGGAGGAAAC
back to top

protein sequence of NO07G00690.1

>NO07G00690.1-protein ID=NO07G00690.1-protein|Name=NO07G00690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MARPSPFRLLSLLLWFVLASTSTASTSTAQSYRKKSTVDECFGKFTPART
PLKIPTGSAANPQGHSRLRAFTRDTLHELGHTIREHPAQTAILSLLVYIK
LHHPELAKNQKHFFQVNDMEMKALGLLWLICSLDESWYVEAAKWLKGVWT
QAMSLLRKLVHRLVGWWKGTATKG*
back to top

mRNA from alignment at chr7:247227..248507+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00690.1 ID=NO07G00690.1|Name=NO07G00690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1281bp|location=Sequence derived from alignment at chr7:247227..248507+ (Nannochloropsis oceanica)
GGCAAAGGATTAACCAGACCTTACCTATGCATGGATGGGGGAGCGGGCGG
GGAGGCCGATGATTTTCGTAGGAATGGCCTCCATAGGACTCACGGCCGAC
CCTTTATCATAACCACCACTCTCATACAGAGGTCATTAAGTAAATTGCGG
TGCGCTGCGTAGGGCTCTGGCGTGGACGCACGGCTTCGACGAGCATATGT
ATATGTATCGTCATATGTCCGTTGTGCATTGCATGCTTCTTGATTTTTCC
TGGCCAAAAAGAACGTGCCCTTGTCACCCAAACTCCAAGGTTAAAAGGCG
CCCTTATCATTTATTCCACATGTTGCAAAACATTTTCTCTTTGACCTGAA
TAAAAATTAAAGGTTCGCAACCCCAAGCGATAATATAGGCTAACCCCCTA
CACTTTCCATTTCTTTATGTGCACATTTCACCGCCGAATTTAATGCTGCA
GACTGTCTAACCCTTCAGCTTCTCTAATTCCTGCATTTAGAGATACTATC
TAACACCGACAGGCACAATAAAAAATGGCGCGGCCGTCGCCTTTCCGATT
GCTTTCCCTTCTCCTCTGGTTCGTTCTGGCCTCCACCTCCACCGCATCCA
CCTCCACTGCCCAATCTTATCGCAAGAAATCCACCGTAGATGAATGCTTC
GGCAAATTCACGCCGGCGCGCACACCTTTAAAAATTCCCACGGGCTCAGC
CGCAAACCCGCAAGGCCATTCCAGACTCCGCGCTTTCACCCGTGACACTC
TCCATGAACTTGGCCACACTATTCGGGAGCATCCCGCGCAGACCGCAATC
CTCTCTCTCTTAGTCTACATCAAACTTCATCATCCCGAGCTCGCCAAGAA
CCAAAAGCATTTCTTTCAGGTCAATGACATGGAGATGAAGGCGTTGGGTT
TGCTGTGGTTAATTTGTAGTTTGGACGAGTCGTGGTATGTCGAGGCAGCA
AAGTGGCTCAAAGGCGTTTGGACGCAAGCCATGAGCCTGCTGCGAAAGCT
AGTGCATCGACTGGTGGGATGGTGGAAGGGCACGGCGACGAAGGGATGAT
ATGATATTTGTGGTCGGGGTCTGATACGAGGTGACAGGCCGTCTGCCAGG
GCAGGCTTTGCTTTTGGCTGCGCTGCGTCTTATCTTTGTTGTGGAAGCCG
AGTTAGTCTCCGAGGAATACATCAATCGATCCATACGCGCCAGTTTAAAT
TGAGCAGGCGGCTCGTGTAGGCGTTCGGATTTGATTTTTTTTGGGGGGGG
AAACGGAAAAGGGAAAAAAATGGGAGGAAAC
back to top

Coding sequence (CDS) from alignment at chr7:247227..248507+

>NO07G00690.1 ID=NO07G00690.1|Name=NO07G00690.1|organism=Nannochloropsis oceanica|type=CDS|length=525bp|location=Sequence derived from alignment at chr7:247227..248507+ (Nannochloropsis oceanica)
ATGGCGCGGCCGTCGCCTTTCCGATTGCTTTCCCTTCTCCTCTGGTTCGT
TCTGGCCTCCACCTCCACCGCATCCACCTCCACTGCCCAATCTTATCGCA
AGAAATCCACCGTAGATGAATGCTTCGGCAAATTCACGCCGGCGCGCACA
CCTTTAAAAATTCCCACGGGCTCAGCCGCAAACCCGCAAGGCCATTCCAG
ACTCCGCGCTTTCACCCGTGACACTCTCCATGAACTTGGCCACACTATTC
GGGAGCATCCCGCGCAGACCGCAATCCTCTCTCTCTTAGTCTACATCAAA
CTTCATCATCCCGAGCTCGCCAAGAACCAAAAGCATTTCTTTCAGGTCAA
TGACATGGAGATGAAGGCGTTGGGTTTGCTGTGGTTAATTTGTAGTTTGG
ACGAGTCGTGGTATGTCGAGGCAGCAAAGTGGCTCAAAGGCGTTTGGACG
CAAGCCATGAGCCTGCTGCGAAAGCTAGTGCATCGACTGGTGGGATGGTG
GAAGGGCACGGCGACGAAGGGATGA
back to top
Synonyms
Publications