NO07G00680.2, NO07G00680.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00680.2
Unique NameNO07G00680.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1721
Alignment locationchr7:245311..247226 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:245311..247226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G00680.2 vs.
Match: EWM27319.1 (FAD dependent oxidoreductase [Nannochloropsis gaditana])

HSP 1 Score: 610.5 bits (1573), Expect = 3.800e-171
Identity = 313/399 (78.45%), Postives = 347/399 (86.97%), Query Frame = 0 
Query:    6 STKLQRRP-RLLPLVLPLLAFLHTGHAFVT--TSLRMMASSSTSASASSMTAGNDNIVIVGGGIMGACTLYYLTQMGLKPTLIERAEIAAAASGKSGGFLARSWHSGSTAKLYGLSFDMHAQLAQELGIESYRKIITLQVQGGPHAGRKKSAMKPSWLDGRADSAFMDDDTAQVTPREFTQKIVAAAVAKGAKVVKGTAVGMVFDK-KEGEERGNELPVVTGVRL-GEKETPVPCSKVVVATGPWAPVAGEWFGIPVPMEGIYSTSITLPNCEAASIQEPYALFCDEDANGCHIEVYPRPDGKIYMCGLGGSDYVSGTRLAPGGDCDRPERIVPKPHRVVAAMKSFSDMSPSMAKGKEPEAAACMRPCSHDGLPILGRIPTARNAYLATALNQWGILGA 400
            ST   RRP RLLP+ L L+AFL T     T  TS  MMA+SS +A A+   +GN+NIV+VGGGIMGACTLYYLTQ GLKP LIER+EIAAAASGK+GGFLARSWH+G+TA+LYGLSFDMHAQLA+ELGIESYR+I TLQVQGGP AG+KKS +KPSWL+GRADSAFMDDDTAQVTP+EFT+KIVAAAVA GA+VVKGT VG+ F + ++G      +  VTGV+L G++E P+PCSKVVVATGPWAPVAGEWFGIPVPMEGIYSTSI LPNCEAASIQEPYALFC ED NGCHIEVYPRPDGKIYMCGLGGSDYV G+RL PGGDCDRPE+I+PKPHRV AAMKSFS MSPSMA GKEP AAACMRPCS DGLPILG+IPTA NAYLATALNQWGILGA
Sbjct:    6 STLALRRPQRLLPVALSLIAFLDTFRPINTFATSYHMMAASSPAAPAAY--SGNENIVVVGGGIMGACTLYYLTQKGLKPVLIERSEIAAAASGKAGGFLARSWHTGATAELYGLSFDMHAQLAKELGIESYRQIPTLQVQGGPRAGQKKSKVKPSWLNGRADSAFMDDDTAQVTPKEFTEKIVAAAVANGAQVVKGTVVGLAFGEGQDGTAPVASIRTVTGVQLEGQEEEPIPCSKVVVATGPWAPVAGEWFGIPVPMEGIYSTSIVLPNCEAASIQEPYALFCGEDENGCHIEVYPRPDGKIYMCGLGGSDYVGGSRLTPGGDCDRPEKILPKPHRVHAAMKSFSAMSPSMAHGKEPMAAACMRPCSQDGLPILGKIPTATNAYLATALNQWGILGA 402
The following BLAST results are available for this feature:
BLAST of NO07G00680.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27319.13.800e-17178.45FAD dependent oxidoreductase [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00680NO07G00680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00680.2NO07G00680.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00680.2.cds1NO07G00680.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00680.2.cds2NO07G00680.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00680.2 ID=NO07G00680.2|Name=NO07G00680.2|organism=Nannochloropsis oceanica|type=mRNA|length=1721bp
CCACTGACCAATCCCAGTCTTGGCACATCACAGCGTATGTTCTCTTCGCC
CTCCACAAAGCTGCAACGACGTCCACGTCTGCTGCCATTGGTACTGCCGC
TGCTGGCTTTCCTACACACTGGCCACGCCTTTGTTACGACATCCCTGCGC
ATGATGGCGTCCTCGTCCACCTCCGCTTCGGCTTCCTCCATGACCGCGGG
CAATGATAACATTGTGATTGTGGGTGGTGGTATCATGGGCGCTTGCACCT
TGTACTACCTGACGCAAATGGGCTTAAAGCCCACGTTAATTGAACGAGCC
GAGATTGCGGCGGCTGCAAGCGGGAAGTCAGGGGGGTTTCTCGCCCGCTC
CTGGCATAGTGGCTCGACAGCCAAGCTGTATGGACTCAGTTTCGACATGC
ATGCACAGCTCGCCCAAGAACTTGGCATTGAAAGCTACCGTAAAATTATC
ACGTTGCAAGTGCAAGGCGGTCCACACGCTGGGCGGAAAAAGTCGGCAAT
GAAGCCCAGTTGGTTGGACGGAAGGGCTGACAGTGCGTTCATGGACGACG
ATACCGCCCAAGTGACCCCCAGAGAATTCACCCAGAAAATTGTCGCTGCG
GCGGTGGCCAAAGGGGCCAAGGTCGTAAAGGGAACGGCCGTTGGCATGGT
GTTTGACAAGAAGGAAGGGGAGGAGCGGGGAAACGAGCTGCCTGTTGTTA
CAGGCGTGCGGTTGGGCGAGAAGGAGACACCGGTGCCTTGTAGCAAGGTG
GTGGTAGCCACGGGGCCGTGGGCTCCGGTGGCGGGGGAATGGTTTGGAAT
TCCTGTGCCGATGGAAGGTATCTACAGTACCAGCATCACCCTCCCCAACT
GCGAGGCCGCAAGCATCCAGGAGCCTTACGCGCTTTTCTGTGACGAAGAT
GCCAATGGCTGCCACATAGAAGTATATCCGCGGCCGGACGGAAAAATATA
CATGTGTGGGTTGGGAGGTAGCGACTATGTGAGTGGCACGCGCTTGGCCC
CTGGGGGGGACTGTGACCGACCTGAGAGAATCGTACCGAAGCCTCACAGG
GTGGTGGCGGCGATGAAGTCTTTCTCGGACATGTCGCCGAGCATGGCCAA
AGGAAAGGAGCCAGAAGCGGCTGCGTGCATGCGGCCATGTAGCCACGATG
GGTTGCCCATTCTGGGACGGATTCCAACGGCCAGAAATGCATACCTGGCG
ACTGCGTTGAATCAGTGGGGGATCCTCGGTGCGTCTTATTTTCCGATTGT
GGGGGAAGGGGAAGAGGAGAAAAGAGGAGATTTATTTTTTCCGTAATTGT
TTTTGTGCTTCTGTATGATCGTCATATTGTCATTGTGTATGTGTGTGGTT
TCGTGTTCCTCTCCCCGCTTGTACATCCATATTTCTTTTTTCTGATTCCT
CGTGTCCTGTCTTTTCTACTTTATCACACAACCAAATGGTGATCTTGCTC
AGTCCCTCATGCCCGCCGTATTTATTATAATCCACCTTTTAAATTCCTCT
TTCGTGAAAAATATGCAGGCGCACCAGCTGCGGGGTTGTGCATGGCGGAG
TTGGTGGTGGAGGGCATGGCCAAAAGCGCTAACATCGATGCCTTCTCGCC
CGCCCGCTTCTTTACGTCAAAAACACGCCGTGGCAAGAATATGAAGGGGC
TGGAGGTAGGAGAGCAATGGTAATAGAGAGGTTTCAATGAAAGAATTAAT
GTAAATTGAGAATTGATGGTA
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protein sequence of NO07G00680.2

>NO07G00680.2-protein ID=NO07G00680.2-protein|Name=NO07G00680.2|organism=Nannochloropsis oceanica|type=polypeptide|length=420bp
MFSSPSTKLQRRPRLLPLVLPLLAFLHTGHAFVTTSLRMMASSSTSASAS
SMTAGNDNIVIVGGGIMGACTLYYLTQMGLKPTLIERAEIAAAASGKSGG
FLARSWHSGSTAKLYGLSFDMHAQLAQELGIESYRKIITLQVQGGPHAGR
KKSAMKPSWLDGRADSAFMDDDTAQVTPREFTQKIVAAAVAKGAKVVKGT
AVGMVFDKKEGEERGNELPVVTGVRLGEKETPVPCSKVVVATGPWAPVAG
EWFGIPVPMEGIYSTSITLPNCEAASIQEPYALFCDEDANGCHIEVYPRP
DGKIYMCGLGGSDYVSGTRLAPGGDCDRPERIVPKPHRVVAAMKSFSDMS
PSMAKGKEPEAAACMRPCSHDGLPILGRIPTARNAYLATALNQWGILGAS
YFPIVGEGEEEKRGDLFFP*
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mRNA from alignment at chr7:245311..247226-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00680.2 ID=NO07G00680.2|Name=NO07G00680.2|organism=Nannochloropsis oceanica|type=mRNA|length=1916bp|location=Sequence derived from alignment at chr7:245311..247226- (Nannochloropsis oceanica)
CCACTGACCAATCCCAGTCTTGGCACATCACAGCGTATGTTCTCTTCGCC
CTCCACAAAGCTGCAACGACGTCCACGTCTGCTGCCATTGGTACTGCCGC
TGCTGGCTTTCCTACACACTGGCCACGCCTTTGTTACGACATCCCTGCGC
ATGATGGCGTCCTCGTCCACCTCCGCTTCGGCTTCCTCCATGACCGCGGG
CAATGATAACATTGTGATTGTGGGTGGTGGTATCATGGGCGCTTGCACCT
TGTACTACCTGACGCAAATGGGCTTAAAGCCCACGTTAATTGAACGAGCC
GAGATTGCGGCGGCTGCAAGCGGGAAGTCAGGGGGGTTTCTCGCCCGCTC
CTGGCATAGTGGCTCGACAGCCAAGCTGTATGGACTCAGTTTCGACATGC
ATGCACAGCTCGCCCAAGAACTTGGCATTGAAAGCTACCGTAAAATTATC
ACGTTGCAAGTGCAAGGCGGTCCACACGCTGGGCGGAAAAAGTCGGCAAT
GAAGCCCAGTTGGTTGGACGGAAGGGCTGACAGTGCGTTCATGGACGACG
ATACCGCCCAAGTGACCCCCAGAGAATTCACCCAGAAAATTGTCGCTGCG
GCGGTGGCCAAAGGGGCCAAGGTCGTAAAGGGAACGGCCGTTGGCATGGT
GTTTGACAAGAAGGAAGGGGAGGAGCGGGGAAACGAGCTGCCTGTTGTTA
CAGGCGTGCGGTTGGGCGAGAAGGAGACACCGGTGCCTTGTAGCAAGGTG
GTGGTAGCCACGGGGCCGTGGGCTCCGGTGGCGGGGGAATGGTTTGGAAT
TCCTGTGCCGATGGAAGGTAAGGCGGTTGGCGTTAGGCTTCAGGATGTGA
GGTGGGAGTGAAAAAGGAGAGGAGGAAAATAGGGAGGGAAAATTAGAACT
CGCAGGCGCCCAAGTTTAGGCAGTCCCGCTACTATTGGGTGTATTAATCC
CTCTGTCAATTCCTCTCGTCTTCCTCATTCTTTCGTCCCCATTCCTCTCT
ACAATAACACAGGTATCTACAGTACCAGCATCACCCTCCCCAACTGCGAG
GCCGCAAGCATCCAGGAGCCTTACGCGCTTTTCTGTGACGAAGATGCCAA
TGGCTGCCACATAGAAGTATATCCGCGGCCGGACGGAAAAATATACATGT
GTGGGTTGGGAGGTAGCGACTATGTGAGTGGCACGCGCTTGGCCCCTGGG
GGGGACTGTGACCGACCTGAGAGAATCGTACCGAAGCCTCACAGGGTGGT
GGCGGCGATGAAGTCTTTCTCGGACATGTCGCCGAGCATGGCCAAAGGAA
AGGAGCCAGAAGCGGCTGCGTGCATGCGGCCATGTAGCCACGATGGGTTG
CCCATTCTGGGACGGATTCCAACGGCCAGAAATGCATACCTGGCGACTGC
GTTGAATCAGTGGGGGATCCTCGGTGCGTCTTATTTTCCGATTGTGGGGG
AAGGGGAAGAGGAGAAAAGAGGAGATTTATTTTTTCCGTAATTGTTTTTG
TGCTTCTGTATGATCGTCATATTGTCATTGTGTATGTGTGTGGTTTCGTG
TTCCTCTCCCCGCTTGTACATCCATATTTCTTTTTTCTGATTCCTCGTGT
CCTGTCTTTTCTACTTTATCACACAACCAAATGGTGATCTTGCTCAGTCC
CTCATGCCCGCCGTATTTATTATAATCCACCTTTTAAATTCCTCTTTCGT
GAAAAATATGCAGGCGCACCAGCTGCGGGGTTGTGCATGGCGGAGTTGGT
GGTGGAGGGCATGGCCAAAAGCGCTAACATCGATGCCTTCTCGCCCGCCC
GCTTCTTTACGTCAAAAACACGCCGTGGCAAGAATATGAAGGGGCTGGAG
GTAGGAGAGCAATGGTAATAGAGAGGTTTCAATGAAAGAATTAATGTAAA
TTGAGAATTGATGGTA
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Coding sequence (CDS) from alignment at chr7:245311..247226-

>NO07G00680.2 ID=NO07G00680.2|Name=NO07G00680.2|organism=Nannochloropsis oceanica|type=CDS|length=1260bp|location=Sequence derived from alignment at chr7:245311..247226- (Nannochloropsis oceanica)
ATGTTCTCTTCGCCCTCCACAAAGCTGCAACGACGTCCACGTCTGCTGCC
ATTGGTACTGCCGCTGCTGGCTTTCCTACACACTGGCCACGCCTTTGTTA
CGACATCCCTGCGCATGATGGCGTCCTCGTCCACCTCCGCTTCGGCTTCC
TCCATGACCGCGGGCAATGATAACATTGTGATTGTGGGTGGTGGTATCAT
GGGCGCTTGCACCTTGTACTACCTGACGCAAATGGGCTTAAAGCCCACGT
TAATTGAACGAGCCGAGATTGCGGCGGCTGCAAGCGGGAAGTCAGGGGGG
TTTCTCGCCCGCTCCTGGCATAGTGGCTCGACAGCCAAGCTGTATGGACT
CAGTTTCGACATGCATGCACAGCTCGCCCAAGAACTTGGCATTGAAAGCT
ACCGTAAAATTATCACGTTGCAAGTGCAAGGCGGTCCACACGCTGGGCGG
AAAAAGTCGGCAATGAAGCCCAGTTGGTTGGACGGAAGGGCTGACAGTGC
GTTCATGGACGACGATACCGCCCAAGTGACCCCCAGAGAATTCACCCAGA
AAATTGTCGCTGCGGCGGTGGCCAAAGGGGCCAAGGTCGTAAAGGGAACG
GCCGTTGGCATGGTGTTTGACAAGAAGGAAGGGGAGGAGCGGGGAAACGA
GCTGCCTGTTGTTACAGGCGTGCGGTTGGGCGAGAAGGAGACACCGGTGC
CTTGTAGCAAGGTGGTGGTAGCCACGGGGCCGTGGGCTCCGGTGGCGGGG
GAATGGTTTGGAATTCCTGTGCCGATGGAAGGTATCTACAGTACCAGCAT
CACCCTCCCCAACTGCGAGGCCGCAAGCATCCAGGAGCCTTACGCGCTTT
TCTGTGACGAAGATGCCAATGGCTGCCACATAGAAGTATATCCGCGGCCG
GACGGAAAAATATACATGTGTGGGTTGGGAGGTAGCGACTATGTGAGTGG
CACGCGCTTGGCCCCTGGGGGGGACTGTGACCGACCTGAGAGAATCGTAC
CGAAGCCTCACAGGGTGGTGGCGGCGATGAAGTCTTTCTCGGACATGTCG
CCGAGCATGGCCAAAGGAAAGGAGCCAGAAGCGGCTGCGTGCATGCGGCC
ATGTAGCCACGATGGGTTGCCCATTCTGGGACGGATTCCAACGGCCAGAA
ATGCATACCTGGCGACTGCGTTGAATCAGTGGGGGATCCTCGGTGCGTCT
TATTTTCCGATTGTGGGGGAAGGGGAAGAGGAGAAAAGAGGAGATTTATT
TTTTCCGTAA
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Synonyms
Publications