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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:245311..247226 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G00680.1 vs.
Match: EWM27319.1 (FAD dependent oxidoreductase [Nannochloropsis gaditana]) HSP 1 Score: 698.7 bits (1802), Expect = 1.100e-197 Identity = 357/448 (79.69%), Postives = 393/448 (87.72%), Query Frame = 0
Query: 6 STKLQRRP-RLLPLVLPLLAFLHTGHAFVT--TSLRMMASSSTSASASSMTAGNDNIVIVGGGIMGACTLYYLTQMGLKPTLIERAEIAAAASGKSGGFLARSWHSGSTAKLYGLSFDMHAQLAQELGIESYRKIITLQVQGGPHAGRKKSAMKPSWLDGRADSAFMDDDTAQVTPREFTQKIVAAAVAKGAKVVKGTAVGMVFDK-KEGEERGNELPVVTGVRL-GEKETPVPCSKVVVATGPWAPVAGEWFGIPVPMEGIYSTSITLPNCEAASIQEPYALFCDEDANGCHIEVYPRPDGKIYMCGLGGSDYVSGTRLAPGGDCDRPERIVPKPHRVVAAMKSFSDMSPSMAKGKEPEAAACMRPCSHDGLPILGRIPTARNAYLATALNQWGILGAPAAGLCMAELVVEGMAKSANIDAFSPARFFTSKTRRGKNMKGLEVGEQW 449
ST RRP RLLP+ L L+AFL T T TS MMA+SS +A A+ +GN+NIV+VGGGIMGACTLYYLTQ GLKP LIER+EIAAAASGK+GGFLARSWH+G+TA+LYGLSFDMHAQLA+ELGIESYR+I TLQVQGGP AG+KKS +KPSWL+GRADSAFMDDDTAQVTP+EFT+KIVAAAVA GA+VVKGT VG+ F + ++G + VTGV+L G++E P+PCSKVVVATGPWAPVAGEWFGIPVPMEGIYSTSI LPNCEAASIQEPYALFC ED NGCHIEVYPRPDGKIYMCGLGGSDYV G+RL PGGDCDRPE+I+PKPHRV AAMKSFS MSPSMA GKEP AAACMRPCS DGLPILG+IPTA NAYLATALNQWGILGAPAAGLCMAELV EG AKSANIDAFSPARFFTS+TRRGK MKG+EVGEQW
Sbjct: 6 STLALRRPQRLLPVALSLIAFLDTFRPINTFATSYHMMAASSPAAPAAY--SGNENIVVVGGGIMGACTLYYLTQKGLKPVLIERSEIAAAASGKAGGFLARSWHTGATAELYGLSFDMHAQLAKELGIESYRQIPTLQVQGGPRAGQKKSKVKPSWLNGRADSAFMDDDTAQVTPKEFTEKIVAAAVANGAQVVKGTVVGLAFGEGQDGTAPVASIRTVTGVQLEGQEEEPIPCSKVVVATGPWAPVAGEWFGIPVPMEGIYSTSIVLPNCEAASIQEPYALFCGEDENGCHIEVYPRPDGKIYMCGLGGSDYVGGSRLTPGGDCDRPEKILPKPHRVHAAMKSFSAMSPSMAHGKEPMAAACMRPCSQDGLPILGKIPTATNAYLATALNQWGILGAPAAGLCMAELVAEGKAKSANIDAFSPARFFTSRTRRGKKMKGIEVGEQW 451
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G00680.1 ID=NO07G00680.1|Name=NO07G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1431bp CCACTGACCAATCCCAGTCTTGGCACATCACAGCGTATGTTCTCTTCGCC CTCCACAAAGCTGCAACGACGTCCACGTCTGCTGCCATTGGTACTGCCGC TGCTGGCTTTCCTACACACTGGCCACGCCTTTGTTACGACATCCCTGCGC ATGATGGCGTCCTCGTCCACCTCCGCTTCGGCTTCCTCCATGACCGCGGG CAATGATAACATTGTGATTGTGGGTGGTGGTATCATGGGCGCTTGCACCT TGTACTACCTGACGCAAATGGGCTTAAAGCCCACGTTAATTGAACGAGCC GAGATTGCGGCGGCTGCAAGCGGGAAGTCAGGGGGGTTTCTCGCCCGCTC CTGGCATAGTGGCTCGACAGCCAAGCTGTATGGACTCAGTTTCGACATGC ATGCACAGCTCGCCCAAGAACTTGGCATTGAAAGCTACCGTAAAATTATC ACGTTGCAAGTGCAAGGCGGTCCACACGCTGGGCGGAAAAAGTCGGCAAT GAAGCCCAGTTGGTTGGACGGAAGGGCTGACAGTGCGTTCATGGACGACG ATACCGCCCAAGTGACCCCCAGAGAATTCACCCAGAAAATTGTCGCTGCG GCGGTGGCCAAAGGGGCCAAGGTCGTAAAGGGAACGGCCGTTGGCATGGT GTTTGACAAGAAGGAAGGGGAGGAGCGGGGAAACGAGCTGCCTGTTGTTA CAGGCGTGCGGTTGGGCGAGAAGGAGACACCGGTGCCTTGTAGCAAGGTG GTGGTAGCCACGGGGCCGTGGGCTCCGGTGGCGGGGGAATGGTTTGGAAT TCCTGTGCCGATGGAAGGTATCTACAGTACCAGCATCACCCTCCCCAACT GCGAGGCCGCAAGCATCCAGGAGCCTTACGCGCTTTTCTGTGACGAAGAT GCCAATGGCTGCCACATAGAAGTATATCCGCGGCCGGACGGAAAAATATA CATGTGTGGGTTGGGAGGTAGCGACTATGTGAGTGGCACGCGCTTGGCCC CTGGGGGGGACTGTGACCGACCTGAGAGAATCGTACCGAAGCCTCACAGG GTGGTGGCGGCGATGAAGTCTTTCTCGGACATGTCGCCGAGCATGGCCAA AGGAAAGGAGCCAGAAGCGGCTGCGTGCATGCGGCCATGTAGCCACGATG GGTTGCCCATTCTGGGACGGATTCCAACGGCCAGAAATGCATACCTGGCG ACTGCGTTGAATCAGTGGGGGATCCTCGGCGCACCAGCTGCGGGGTTGTG CATGGCGGAGTTGGTGGTGGAGGGCATGGCCAAAAGCGCTAACATCGATG CCTTCTCGCCCGCCCGCTTCTTTACGTCAAAAACACGCCGTGGCAAGAAT ATGAAGGGGCTGGAGGTAGGAGAGCAATGGTAATAGAGAGGTTTCAATGA AAGAATTAATGTAAATTGAGAATTGATGGTA back to topprotein sequence of NO07G00680.1 >NO07G00680.1-protein ID=NO07G00680.1-protein|Name=NO07G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=449bp MFSSPSTKLQRRPRLLPLVLPLLAFLHTGHAFVTTSLRMMASSSTSASAS SMTAGNDNIVIVGGGIMGACTLYYLTQMGLKPTLIERAEIAAAASGKSGG FLARSWHSGSTAKLYGLSFDMHAQLAQELGIESYRKIITLQVQGGPHAGR KKSAMKPSWLDGRADSAFMDDDTAQVTPREFTQKIVAAAVAKGAKVVKGT AVGMVFDKKEGEERGNELPVVTGVRLGEKETPVPCSKVVVATGPWAPVAG EWFGIPVPMEGIYSTSITLPNCEAASIQEPYALFCDEDANGCHIEVYPRP DGKIYMCGLGGSDYVSGTRLAPGGDCDRPERIVPKPHRVVAAMKSFSDMS PSMAKGKEPEAAACMRPCSHDGLPILGRIPTARNAYLATALNQWGILGAP AAGLCMAELVVEGMAKSANIDAFSPARFFTSKTRRGKNMKGLEVGEQW* back to topmRNA from alignment at chr7:245311..247226- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G00680.1 ID=NO07G00680.1|Name=NO07G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1916bp|location=Sequence derived from alignment at chr7:245311..247226- (Nannochloropsis oceanica) CCACTGACCAATCCCAGTCTTGGCACATCACAGCGTATGTTCTCTTCGCC
CTCCACAAAGCTGCAACGACGTCCACGTCTGCTGCCATTGGTACTGCCGC
TGCTGGCTTTCCTACACACTGGCCACGCCTTTGTTACGACATCCCTGCGC
ATGATGGCGTCCTCGTCCACCTCCGCTTCGGCTTCCTCCATGACCGCGGG
CAATGATAACATTGTGATTGTGGGTGGTGGTATCATGGGCGCTTGCACCT
TGTACTACCTGACGCAAATGGGCTTAAAGCCCACGTTAATTGAACGAGCC
GAGATTGCGGCGGCTGCAAGCGGGAAGTCAGGGGGGTTTCTCGCCCGCTC
CTGGCATAGTGGCTCGACAGCCAAGCTGTATGGACTCAGTTTCGACATGC
ATGCACAGCTCGCCCAAGAACTTGGCATTGAAAGCTACCGTAAAATTATC
ACGTTGCAAGTGCAAGGCGGTCCACACGCTGGGCGGAAAAAGTCGGCAAT
GAAGCCCAGTTGGTTGGACGGAAGGGCTGACAGTGCGTTCATGGACGACG
ATACCGCCCAAGTGACCCCCAGAGAATTCACCCAGAAAATTGTCGCTGCG
GCGGTGGCCAAAGGGGCCAAGGTCGTAAAGGGAACGGCCGTTGGCATGGT
GTTTGACAAGAAGGAAGGGGAGGAGCGGGGAAACGAGCTGCCTGTTGTTA
CAGGCGTGCGGTTGGGCGAGAAGGAGACACCGGTGCCTTGTAGCAAGGTG
GTGGTAGCCACGGGGCCGTGGGCTCCGGTGGCGGGGGAATGGTTTGGAAT
TCCTGTGCCGATGGAAGGTAAGGCGGTTGGCGTTAGGCTTCAGGATGTGA
GGTGGGAGTGAAAAAGGAGAGGAGGAAAATAGGGAGGGAAAATTAGAACT
CGCAGGCGCCCAAGTTTAGGCAGTCCCGCTACTATTGGGTGTATTAATCC
CTCTGTCAATTCCTCTCGTCTTCCTCATTCTTTCGTCCCCATTCCTCTCT
ACAATAACACAGGTATCTACAGTACCAGCATCACCCTCCCCAACTGCGAG
GCCGCAAGCATCCAGGAGCCTTACGCGCTTTTCTGTGACGAAGATGCCAA
TGGCTGCCACATAGAAGTATATCCGCGGCCGGACGGAAAAATATACATGT
GTGGGTTGGGAGGTAGCGACTATGTGAGTGGCACGCGCTTGGCCCCTGGG
GGGGACTGTGACCGACCTGAGAGAATCGTACCGAAGCCTCACAGGGTGGT
GGCGGCGATGAAGTCTTTCTCGGACATGTCGCCGAGCATGGCCAAAGGAA
AGGAGCCAGAAGCGGCTGCGTGCATGCGGCCATGTAGCCACGATGGGTTG
CCCATTCTGGGACGGATTCCAACGGCCAGAAATGCATACCTGGCGACTGC
GTTGAATCAGTGGGGGATCCTCGGTGCGTCTTATTTTCCGATTGTGGGGG
AAGGGGAAGAGGAGAAAAGAGGAGATTTATTTTTTCCGTAATTGTTTTTG
TGCTTCTGTATGATCGTCATATTGTCATTGTGTATGTGTGTGGTTTCGTG
TTCCTCTCCCCGCTTGTACATCCATATTTCTTTTTTCTGATTCCTCGTGT
CCTGTCTTTTCTACTTTATCACACAACCAAATGGTGATCTTGCTCAGTCC
CTCATGCCCGCCGTATTTATTATAATCCACCTTTTAAATTCCTCTTTCGT
GAAAAATATGCAGGCGCACCAGCTGCGGGGTTGTGCATGGCGGAGTTGGT
GGTGGAGGGCATGGCCAAAAGCGCTAACATCGATGCCTTCTCGCCCGCCC
GCTTCTTTACGTCAAAAACACGCCGTGGCAAGAATATGAAGGGGCTGGAG
GTAGGAGAGCAATGGTAATAGAGAGGTTTCAATGAAAGAATTAATGTAAA
TTGAGAATTGATGGTA back to topCoding sequence (CDS) from alignment at chr7:245311..247226- >NO07G00680.1 ID=NO07G00680.1|Name=NO07G00680.1|organism=Nannochloropsis oceanica|type=CDS|length=1347bp|location=Sequence derived from alignment at chr7:245311..247226- (Nannochloropsis oceanica) ATGTTCTCTTCGCCCTCCACAAAGCTGCAACGACGTCCACGTCTGCTGCC ATTGGTACTGCCGCTGCTGGCTTTCCTACACACTGGCCACGCCTTTGTTA CGACATCCCTGCGCATGATGGCGTCCTCGTCCACCTCCGCTTCGGCTTCC TCCATGACCGCGGGCAATGATAACATTGTGATTGTGGGTGGTGGTATCAT GGGCGCTTGCACCTTGTACTACCTGACGCAAATGGGCTTAAAGCCCACGT TAATTGAACGAGCCGAGATTGCGGCGGCTGCAAGCGGGAAGTCAGGGGGG TTTCTCGCCCGCTCCTGGCATAGTGGCTCGACAGCCAAGCTGTATGGACT CAGTTTCGACATGCATGCACAGCTCGCCCAAGAACTTGGCATTGAAAGCT ACCGTAAAATTATCACGTTGCAAGTGCAAGGCGGTCCACACGCTGGGCGG AAAAAGTCGGCAATGAAGCCCAGTTGGTTGGACGGAAGGGCTGACAGTGC GTTCATGGACGACGATACCGCCCAAGTGACCCCCAGAGAATTCACCCAGA AAATTGTCGCTGCGGCGGTGGCCAAAGGGGCCAAGGTCGTAAAGGGAACG GCCGTTGGCATGGTGTTTGACAAGAAGGAAGGGGAGGAGCGGGGAAACGA GCTGCCTGTTGTTACAGGCGTGCGGTTGGGCGAGAAGGAGACACCGGTGC CTTGTAGCAAGGTGGTGGTAGCCACGGGGCCGTGGGCTCCGGTGGCGGGG GAATGGTTTGGAATTCCTGTGCCGATGGAAGGTATCTACAGTACCAGCAT CACCCTCCCCAACTGCGAGGCCGCAAGCATCCAGGAGCCTTACGCGCTTT TCTGTGACGAAGATGCCAATGGCTGCCACATAGAAGTATATCCGCGGCCG GACGGAAAAATATACATGTGTGGGTTGGGAGGTAGCGACTATGTGAGTGG CACGCGCTTGGCCCCTGGGGGGGACTGTGACCGACCTGAGAGAATCGTAC CGAAGCCTCACAGGGTGGTGGCGGCGATGAAGTCTTTCTCGGACATGTCG CCGAGCATGGCCAAAGGAAAGGAGCCAGAAGCGGCTGCGTGCATGCGGCC ATGTAGCCACGATGGGTTGCCCATTCTGGGACGGATTCCAACGGCCAGAA ATGCATACCTGGCGACTGCGTTGAATCAGTGGGGGATCCTCGGCGCACCA GCTGCGGGGTTGTGCATGGCGGAGTTGGTGGTGGAGGGCATGGCCAAAAG CGCTAACATCGATGCCTTCTCGCCCGCCCGCTTCTTTACGTCAAAAACAC GCCGTGGCAAGAATATGAAGGGGCTGGAGGTAGGAGAGCAATGGTAA back to top
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