NO07G00470.1, NO07G00470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00470.1
Unique NameNO07G00470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1586
Alignment locationchr7:172813..175188 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:172813..175188 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G00470.1 vs.
Match: EWM27301.1 (ATPase, F0 complex, subunit D, mitochondrial [Nannochloropsis gaditana])

HSP 1 Score: 286.2 bits (731), Expect = 7.800e-74
Identity = 144/189 (76.19%), Postives = 168/189 (88.89%), Query Frame = 0 
Query:   13 MASAVRQLVSRQQRLVVR---APVAVTTRAMGSSWDALGRKVEADIEAKTDFNSLKNQWDSIEKDFHTWSKEVAPIDWAKYKSNIEAPGFVDFLKQRYEGIDWAQLNVKLSQAEVAADKAEKETMLKEGSALVSAAEKIIEETKHKMHLATTKRTNKDSLVEDVWEKNPSIKEEVLAEIEDHKWFKDIK 199
            MAS VR +VSRQQ L +R   APV+VT RA+ S+WDALGRKVEAD+EAK DFN+LKNQWD IEKDF+TWSKEVAPIDWAKYK+NIEAPGFVDFLK+RYEGIDW+QLN KLS+ E+AAD A K  +L+EG ALV+AAEK+IEET+ KMHLA TKRTNKDSLV+DVWEKNP+IK+EVL EIE+H+WFKD+K
Sbjct:    1 MASTVRGIVSRQQALWMRTAAAPVSVTRRAL-SNWDALGRKVEADVEAKADFNALKNQWDGIEKDFNTWSKEVAPIDWAKYKNNIEAPGFVDFLKERYEGIDWSQLNTKLSEEEIAADAAGKAALLEEGKALVAAAEKLIEETQAKMHLAATKRTNKDSLVQDVWEKNPAIKQEVLDEIENHQWFKDVK 188
The following BLAST results are available for this feature:
BLAST of NO07G00470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27301.17.800e-7476.19ATPase, F0 complex, subunit D, mitochondrial [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00470NO07G00470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00470.1NO07G00470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00470.1.cds1NO07G00470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00470.1.cds2NO07G00470.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00470.1.cds3NO07G00470.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00470.1.cds4NO07G00470.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00470.1.cds5NO07G00470.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00470.1 ID=NO07G00470.1|Name=NO07G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1586bp
ACGGCAAGTACTTTGTTATACTGTGTTTGTTATTACTGACTGCAAGTGCT
TCGTTTCACTGTATTCGCCCCCTGTCCCTGTGAGGAGGGGAAATCAATCA
CGTCCTAAGCAACACACCCCGAGCTTTTTTGGGTTCAATACCACAGAGGG
AGTGTTTATATAGTTTTTAAAACGTCTTCGTGAAAGGTTTGATAATGAAA
TAGACTCCCATGCGGATTGTGGAACCTTTCGAAAAAAGCTGTTGCTGACG
TTCGGTGGGGTAGTCTCTTTGGGAGGGTGAAAAGGGAAGTTAGGCTCAAC
ATGCCCCCTAATAGAGCAAAGGCACAGCGTGATGCTTGATGAATAAATGG
GTGTGATTCGCCTTCTTTTTAATGGTGTTTTGGCCCCTCCTTTCACAACA
ACACGCGTGCGAAAGCGCTCGAAAAGTGAGCAGCCCAACAGTTGGCGGAG
GATGAGGGAACGAGGACCAAAGCCAAGCCTTTGTTGTCGTCTTGCTCGCA
TGCACGTTCACATCCCTCACGTCTTGGGTCTCTGGCCTCCACGGCACAAC
TGCTTACGAGCAGGTACAGCTCTTGTCAGTCTTGAGCCTGTCTCCTGCCT
TGCCACAGAGCATACATGACGTCGCAGCCACCCACCCAACCAGAGCAAGC
GAGAGCACAAGCAAGCATCTAATTACCAGACCGAAACATGCTTCCTCCTT
CCTCCCTTTATAGACACAGCAGAATGGCCAGTGCTGTCCGACAACTCGTC
AGCCGCCAGCAGCGCCTGGTAGTGCGAGCGCCGGTCGCCGTCACGACCCG
TGCCATGGGGAGCAGCTGGGACGCGCTTGGTCGCAAGGTAGAGGCGGACA
TTGAGGCTAAGACGGATTTTAATTCGCTCAAGAACCAGTGGGACAGCATC
GAGAAGGACTTCCACACCTGGTCTAAGGAGGTCGCTCCCATCGACTGGGC
CAAATACAAGAGCAATATTGAGGCCCCGGGTTTCGTGGATTTTCTAAAGC
AACGCTACGAGGGTATTGATTGGGCTCAGCTCAACGTGAAGTTGAGCCAG
GCAGAGGTTGCGGCGGATAAGGCTGAGAAAGAGACGATGCTGAAGGAGGG
CAGCGCATTGGTGTCTGCCGCGGAGAAGATTATCGAGGAAACGAAGCATA
AGATGCACCTGGCCACTACCAAAAGGACGAACAAGGACTCTCTCGTGGAG
GATGTGTGGGAGAAGAACCCCTCGATCAAGGAGGAGGTGCTGGCCGAGAT
CGAGGATCACAAGTGGTTCAAGGACATTAAATAAACCTCGCCCTCCACCC
CTCTTTCCCTCGGTCTCTGCCCCTCCCTCCCTCCCTCTTTCGTCTTCGTG
TGAGAGACGGAGAGGAGAAGGAGGGAAGGGGGAGGGAAGGAGGGCATGTT
CGTTTTGTGTCATGTTGTGTGTGTACTCATCGTGTAGTAGGTCGAGGGAA
GGGGGAAGGGAGAGGGGGAAGGAGAGGATTTTGAAGAGGGCAGTGGCTTG
AGGGTGGGAGGATGGAATGGAGGGAGGGAGGAAGGGGAGTGCTCGATCAG
ATCAAGGAATAGAAGAAATTGATCCGTGGTTTAATT
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protein sequence of NO07G00470.1

>NO07G00470.1-protein ID=NO07G00470.1-protein|Name=NO07G00470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MLPPSSLYRHSRMASAVRQLVSRQQRLVVRAPVAVTTRAMGSSWDALGRK
VEADIEAKTDFNSLKNQWDSIEKDFHTWSKEVAPIDWAKYKSNIEAPGFV
DFLKQRYEGIDWAQLNVKLSQAEVAADKAEKETMLKEGSALVSAAEKIIE
ETKHKMHLATTKRTNKDSLVEDVWEKNPSIKEEVLAEIEDHKWFKDIK*
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mRNA from alignment at chr7:172813..175188-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00470.1 ID=NO07G00470.1|Name=NO07G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=2376bp|location=Sequence derived from alignment at chr7:172813..175188- (Nannochloropsis oceanica)
ACGGCAAGTACTTTGTTATACTGTGTTTGTTATTACTGACTGCAAGTGCT
TCGTTTCACTGTATTCGCCCCCTGTCCCTGTGAGGAGGGGAAATCAATCA
CGTCCTAAGCAACACACCCCGAGCTTTTTTGGGTTCAATACCACAGAGGG
AGTGTTTATATAGTTTTTAAAACGTCTTCGTGAAAGGTTTGATAATGAAA
TAGACTCCCATGCGGATTGTGGAACCTTTCGAAAAAAGCTGTTGCTGACG
TTCGGTGGGGTAGTCTCTTTGGGAGGGTGAAAAGGGAAGTTAGGCTCAAC
ATGCCCCCTAATAGAGCAAAGGCACAGCGTGATGCTTGATGAATAAATGG
GTGTGATTCGCCTTCTTTTTAATGGTGTTTTGGCCCCTCCTTTCACAACA
ACACGCGTGCGAAAGCGCTCGAAAAGTGAGCAGCCCAACAGTTGGCGGAG
GATGAGGGAACGAGGACCAAAGCCAAGCCTTTGTTGTCGTCTTGCTCGCA
TGCACGTTCACATCCCTCACGTCTTGGGTCTCTGGCCTCCACGGCACAAC
TGCTTACGAGCAGGTACAGCTCTTGTCAGTCTTGAGCCTGTCTCCTGCCT
TGCCACAGAGCATACATGACGTCGCAGCCACCCACCCAACCAGAGCAAGC
GAGAGCACAAGCAAGCATCTAATTACCAGACCGAAACATGCTTCCTCCTT
CCTCCCTTTATAGACACAGCAGAATGGCCAGTGCTGTCCGACAACTCGTC
AGCCGCCAGCAGCGCCTGGTAGTGCGAGCGCCGGTCGCCGTCACGACCCG
TGCCATGGGGAGCAGCTGGTAAGCCTAGGAAGGGAGGAAACTATGAGAAT
TGGAGGGAGAGGGTGGGGGGAGGAGGATGACGACCAAGAGCAGTGCAGAT
GCTGCCAGGACTAGAGTACTGGTTGGGAGCAGAAGGTTTAGGAGGAAAGG
AAATGAAGAATGCATGAGTGGCAATCCCTACGGATGTCTTAGTTGTGTAT
GTTGCATTCCCGTACTGACGCGTGCCACATCCAACGACGGTCATCATGCC
TTTCACTTTCATTCACATCATATATATAATGCCTTTCACTTCCGTTTACA
TCCTCCCTTCCCTTGTCATCCTCTACATCCAAACAGGGACGCGCTTGGTC
GCAAGGTAGAGGCGGACATTGAGGCTAAGACGGATTTTAATTCGCTCAAG
AACCAGTGGGACAGCATCGAGAAGGACTTCCACACCTGGTCTAAGGAGGT
GAGGGGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAA
GGAAGCGTGGGAAAGAAGGTGAAGATATCAACCTTGTATTTTTAGTTCTG
TTGTCACGTCTCACTCACCCCTCTCCTCTGTCCTTCCCCCTCAGGTCGCT
CCCATCGACTGGGCCAAATACAAGAGCAATATTGAGGCCCCGGGTTTCGT
GGATTTTCTAAAGCAACGCTACGAGGGTATTGATTGGGCTCAGCTCAACG
TGAAGTTGAGCCAGGCAGAGGTTGCGGCGGATAAGGCTGAGAAAGAGACG
ATGGTGCGTGACTTGATTGCAAAGGGGGTCGCTATCGCCCCCCCTTCCTC
CCTCCCCCCTCCCTTCCTTCCTTTCTTTCTTTCTTCCTTCTCTGTCGATT
GCCATCCTTCACTCGTCTTCTATTCGTGAGTGGCCATCCAGACCGACAGC
TCCCATACATACCCACCCTCTTTCCCTCCCTCCCTCCCTCTTTCCCTCCC
TCTCGACAGCTGAAGGAGGGCAGCGCATTGGTGTCTGCCGCGGAGAAGAT
TATCGAGGAAACGAAGCATAAGATGCACCTGGCCACTACCAAAAGGACGA
ACAAGGACTCTCTCGTGGAGGATGTGTGGGAGAAGAACCCCTCGATCAAG
GAGGAGGTGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAT
TGGGAGGTGTTTCTTGTCTATGCCAATCCACGCACTCGCTCACTCCCTCC
CTCCCTCCCTCCCTCCTTTCGTCTAGGTGCTGGCCGAGATCGAGGATCAC
AAGTGGTTCAAGGACATTAAATAAACCTCGCCCTCCACCCCTCTTTCCCT
CGGTCTCTGCCCCTCCCTCCCTCCCTCTTTCGTCTTCGTGTGAGAGACGG
AGAGGAGAAGGAGGGAAGGGGGAGGGAAGGAGGGCATGTTCGTTTTGTGT
CATGTTGTGTGTGTACTCATCGTGTAGTAGGTCGAGGGAAGGGGGAAGGG
AGAGGGGGAAGGAGAGGATTTTGAAGAGGGCAGTGGCTTGAGGGTGGGAG
GATGGAATGGAGGGAGGGAGGAAGGGGAGTGCTCGATCAGATCAAGGAAT
AGAAGAAATTGATCCGTGGTTTAATT
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Coding sequence (CDS) from alignment at chr7:172813..175188-

>NO07G00470.1 ID=NO07G00470.1|Name=NO07G00470.1|organism=Nannochloropsis oceanica|type=CDS|length=597bp|location=Sequence derived from alignment at chr7:172813..175188- (Nannochloropsis oceanica)
ATGCTTCCTCCTTCCTCCCTTTATAGACACAGCAGAATGGCCAGTGCTGT
CCGACAACTCGTCAGCCGCCAGCAGCGCCTGGTAGTGCGAGCGCCGGTCG
CCGTCACGACCCGTGCCATGGGGAGCAGCTGGGACGCGCTTGGTCGCAAG
GTAGAGGCGGACATTGAGGCTAAGACGGATTTTAATTCGCTCAAGAACCA
GTGGGACAGCATCGAGAAGGACTTCCACACCTGGTCTAAGGAGGTCGCTC
CCATCGACTGGGCCAAATACAAGAGCAATATTGAGGCCCCGGGTTTCGTG
GATTTTCTAAAGCAACGCTACGAGGGTATTGATTGGGCTCAGCTCAACGT
GAAGTTGAGCCAGGCAGAGGTTGCGGCGGATAAGGCTGAGAAAGAGACGA
TGCTGAAGGAGGGCAGCGCATTGGTGTCTGCCGCGGAGAAGATTATCGAG
GAAACGAAGCATAAGATGCACCTGGCCACTACCAAAAGGACGAACAAGGA
CTCTCTCGTGGAGGATGTGTGGGAGAAGAACCCCTCGATCAAGGAGGAGG
TGCTGGCCGAGATCGAGGATCACAAGTGGTTCAAGGACATTAAATAA
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Synonyms
Publications