NO06G04430.2, NO06G04430.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04430.2
Unique NameNO06G04430.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1089
Alignment locationchr6:1245171..1247128 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1245171..1247128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO06G04430.2 vs.
Match: EWM26442.1 (coproporphyrinogen iii oxidase [Nannochloropsis gaditana])

HSP 1 Score: 396.0 bits (1016), Expect = 1.200e-106
Identity = 208/312 (66.67%), Postives = 238/312 (76.28%), Query Frame = 0 
Query:   20 LLLLLLPSLHAFVASPAPSSSSSPAFSSAVKSTHRDINPHAGLSPATVLDS------LVFSSPSPTFDAFAAFIQEMQKDIITTLEDEDGTGATFQVDKWTRDGGLSHGATCVLEGGAFIEKGAVSVSIIKGVLSKERAAAMSSRGRDLGGNTEGGVQYAAAALSLVLHSANPHLPTFRSDVRYFECQGRGWFGGGADLTPYYLHDGDIAAFHALYRGLCDAFDPTKALFPRYKKWCDSYFYLPGRQEHRGVGGIFFDDLEGMEGGMEEGAEGKEEEKEEEERGGEGRKEGRVEKARRFTEAVARSFMPSYL 326
            +L+ + P    F+  P+ SSSS  +  + +K  HRD+NPH+  S ++   S      L  SSP+ TFD FA+FI  +Q++II T+E EDGT   F  D+W RDGG SHGATCVLEGGAFIEKGAVS+SII+G LS ERAA+MS+RGRDLG  ++G V YAAAALSLVLHSANPHLPTFRSDVRYFECQG+GWFGGGADLTPYYLHDGDI AFHALYRGLCDAFD  KALFP+YKKWCDSYF+LPGRQEHRG GGIFFDDLE +EGG EE           EE G EG     VE+AR FTEAVARSFMPSYL
Sbjct:   92 ILVCMAPYARPFLL-PSTSSSSPSSLVAPLKGAHRDLNPHSTASSSSRTPSTSHGSNLSSSSPTSTFDTFASFITAIQREIIQTIETEDGTDVKFLCDEWERDGGRSHGATCVLEGGAFIEKGAVSISIIQGKLSAERAASMSARGRDLGDCSQGDVPYAAAALSLVLHSANPHLPTFRSDVRYFECQGKGWFGGGADLTPYYLHDGDIVAFHALYRGLCDAFDEKKALFPKYKKWCDSYFFLPGRQEHRGTGGIFFDDLEALEGGGEEAG---------EEAGEEG-----VERARMFTEAVARSFMPSYL 388
The following BLAST results are available for this feature:
BLAST of NO06G04430.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26442.11.200e-10666.67coproporphyrinogen iii oxidase [Nannochloropsis ga... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04430NO06G04430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04430.2NO06G04430.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04430.2.cds1NO06G04430.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04430.2.cds2NO06G04430.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04430.2.cds3NO06G04430.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04430.2.cds4NO06G04430.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04430.2.cds5NO06G04430.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04430.2 ID=NO06G04430.2|Name=NO06G04430.2|organism=Nannochloropsis oceanica|type=mRNA|length=1089bp
AAAACAATCTCTAGGACAATGGGGCCGTCAAGAACAGTAGGGGCCAGACT
TTCAAGTAGATGGCGTTTTCATCATCTCCTTCTCCTCCTCCTGCCCTCTC
TTCACGCCTTCGTAGCCTCCCCTGCTCCCTCCTCCTCCTCCTCTCCTGCT
TTTTCCTCGGCAGTCAAAAGTACACACCGAGACATCAACCCGCATGCAGG
TCTGTCCCCCGCCACCGTCCTTGACTCCCTTGTCTTCTCCTCCCCGTCCC
CGACGTTTGATGCCTTCGCCGCATTCATTCAAGAGATGCAAAAGGACATT
ATCACTACGCTTGAGGACGAAGACGGCACTGGTGCCACCTTCCAAGTCGA
CAAGTGGACGCGTGACGGGGGATTAAGTCATGGAGCCACCTGCGTATTGG
AAGGCGGGGCGTTCATCGAAAAAGGCGCTGTCAGTGTCTCCATTATCAAG
GGCGTCCTTTCCAAGGAGAGGGCCGCCGCTATGAGCTCCAGAGGGCGAGA
CCTCGGCGGCAACACGGAGGGAGGGGTGCAGTACGCCGCCGCCGCCTTGT
CCCTCGTCCTCCATTCGGCCAACCCCCATCTGCCAACGTTTAGGAGCGAT
GTCCGTTATTTTGAGTGCCAGGGCAGGGGCTGGTTCGGCGGCGGGGCGGA
CCTGACTCCCTACTATCTCCACGACGGGGATATCGCCGCCTTCCACGCCC
TCTATCGCGGCCTCTGTGATGCCTTCGACCCCACCAAGGCCCTCTTTCCC
AGGTACAAGAAGTGGTGCGACTCCTACTTCTACCTACCCGGAAGACAAGA
ACACCGAGGTGTCGGCGGAATCTTCTTCGATGACCTGGAGGGGATGGAGG
GAGGGATGGAGGAAGGAGCGGAGGGGAAGGAGGAGGAAAAGGAGGAGGAG
GAGAGAGGGGGGGAAGGACGGAAGGAGGGAAGGGTGGAGAAGGCGAGGAG
ATTTACGGAGGCGGTGGCCCGTAGTTTCATGCCCAGCTATTTATCGCGTG
AGTGTGCTGTGCTGGTTATATTGGTTTGAGTTGGGGTGGAATATGAAAAC
CGTCGCCCTCCCTCCCTTCCTCCCTGCCTCCTTCCCTTT
back to top

protein sequence of NO06G04430.2

>NO06G04430.2-protein ID=NO06G04430.2-protein|Name=NO06G04430.2|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MGPSRTVGARLSSRWRFHHLLLLLLPSLHAFVASPAPSSSSSPAFSSAVK
STHRDINPHAGLSPATVLDSLVFSSPSPTFDAFAAFIQEMQKDIITTLED
EDGTGATFQVDKWTRDGGLSHGATCVLEGGAFIEKGAVSVSIIKGVLSKE
RAAAMSSRGRDLGGNTEGGVQYAAAALSLVLHSANPHLPTFRSDVRYFEC
QGRGWFGGGADLTPYYLHDGDIAAFHALYRGLCDAFDPTKALFPRYKKWC
DSYFYLPGRQEHRGVGGIFFDDLEGMEGGMEEGAEGKEEEKEEEERGGEG
RKEGRVEKARRFTEAVARSFMPSYLSRECAVLVILV*
back to top

mRNA from alignment at chr6:1245171..1247128-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04430.2 ID=NO06G04430.2|Name=NO06G04430.2|organism=Nannochloropsis oceanica|type=mRNA|length=1958bp|location=Sequence derived from alignment at chr6:1245171..1247128- (Nannochloropsis oceanica)
AAAACAATCTCTAGGACAATGGGGCCGTCAAGAACAGTAGGGGCCAGACT
TTCAAGTAGATGGCGTTTTCATCATCTCCTTCTCCTCCTCCTGCCCTCTC
TTCACGCCTTCGTAGCCTCCCCTGCTCCCTCCTCCTCCTCCTCTCCTGCT
TTTTCCTCGGCAGTCAAAAGTACACACCGAGACATCAACCCGCATGCAGG
TCTGTCCCCCGCCACCGTCCTTGACTCCCTTGTCTTCTCCTCCCCGTCCC
CGACGTTTGATGCCTTCGCCGCATTCATTCAAGAGATGCAAAAGGACATT
ATCACTACGCTTGAGGTAGGCTGATTGCAGGGGAACGAGACAGGGCGCGG
ATAACGACGACAGTGAAAGGCACACCAATAGGGGTCGCATGGAACTTGCG
AAAGAAGGAGGAGAAGAAGAAGAAGAAGTAGAAGAAGAGGATAGAGGAAT
ACGGAAAGGCCTCGAATAGAGATTAATATCATGAGATGAGGGTGGGGAGG
TTGCAGGGGCGCTCCCGTGGATGGCGGTGTGTGTTATTGGAGTGGCATAT
GTAATCTTTTCTTGGCACAAGCACTCACACCACCTGACTTCCGTCTTCCC
CTCTCCCTCTCTCTTCCATCCGCAGGACGAAGACGGCACTGGTGCCACCT
TCCAAGTCGACAAGTGGACGCGTGACGGGGGATTAAGTCATGGAGCCACC
TGCGTATTGGAAGGCGGGGCGTTCATCGAAAAAGGCGCTGTCAGTGTCTC
CATTATCAAGGGCGTCCTTTCCAAGGAGAGGGCCGCCGCTATGAGCTCCA
GGTGCGTGCTTCCTCCTCTCCTCCCTTCATACCTCCTTCCCTCTCTTTTC
CCTTCAGATATCTCTCTAAACACATCACGATTTCTCTCTGTCTCTGTCTG
TGTGTCTCTCTGTCACTCTATCTGTCGGTCTCCTTCCCTCTCTCCCTCTT
TCTCACCCATCCAACCAATCCCCCTTTCCGTTCTTTCTCCTCCCCCCTCA
TCTTCTCCTTCACTAAAGAGGGCGAGACCTCGGCGGCAACACGGAGGGAG
GGGTGCAGTACGCCGCCGCCGCCTTGTCCCTCGTCCTCCATTCGGCCAAC
CCCCATCTGCCAACGTTTAGGAGCGATGTCCGTTATTTTGAGTGCCAGGT
GGGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGCCGGG
TAAGAAAACACAGGCGCCCAGAAAAGGAATCACTCGATTACTATCTTCTG
GCCCGTGGATTAACACCCCTCCCCCCTCCTTCCATCCTTCCCTCCCAACC
TCTCTCTTTATCAACGCAGGGCAGGGGCTGGTTCGGCGGCGGGGCGGACC
TGACTCCCTACTATCTCCACGACGGGGATATCGCCGCCTTCCACGCCCTC
TATCGCGGCCTCTGTGATGCCTTCGACCCCACCAAGGTCAGCCCCTCGCT
CCCTCCCTCCCTCCTCCCCTTCCTTCCCTGGCCCTCTCCTTCCGTCTCTC
TCATTCATTTCCCCAAGTGACAAGGAATGCGACGCCGTCTTCTACCTATT
CAGCCTCCCCCCCCTCCCTCCCCCCTCCCTCCCCCCCTCCCTCCCCCCCT
CCCTCAGGCCCTCTTTCCCAGGTACAAGAAGTGGTGCGACTCCTACTTCT
ACCTACCCGGAAGACAAGAACACCGAGGTGTCGGCGGAATCTTCTTCGAT
GACCTGGAGGGGATGGAGGGAGGGATGGAGGAAGGAGCGGAGGGGAAGGA
GGAGGAAAAGGAGGAGGAGGAGAGAGGGGGGGAAGGACGGAAGGAGGGAA
GGGTGGAGAAGGCGAGGAGATTTACGGAGGCGGTGGCCCGTAGTTTCATG
CCCAGCTATTTATCGCGTGAGTGTGCTGTGCTGGTTATATTGGTTTGAGT
TGGGGTGGAATATGAAAACCGTCGCCCTCCCTCCCTTCCTCCCTGCCTCC
TTCCCTTT
back to top

Coding sequence (CDS) from alignment at chr6:1245171..1247128-

>NO06G04430.2 ID=NO06G04430.2|Name=NO06G04430.2|organism=Nannochloropsis oceanica|type=CDS|length=1011bp|location=Sequence derived from alignment at chr6:1245171..1247128- (Nannochloropsis oceanica)
ATGGGGCCGTCAAGAACAGTAGGGGCCAGACTTTCAAGTAGATGGCGTTT
TCATCATCTCCTTCTCCTCCTCCTGCCCTCTCTTCACGCCTTCGTAGCCT
CCCCTGCTCCCTCCTCCTCCTCCTCTCCTGCTTTTTCCTCGGCAGTCAAA
AGTACACACCGAGACATCAACCCGCATGCAGGTCTGTCCCCCGCCACCGT
CCTTGACTCCCTTGTCTTCTCCTCCCCGTCCCCGACGTTTGATGCCTTCG
CCGCATTCATTCAAGAGATGCAAAAGGACATTATCACTACGCTTGAGGAC
GAAGACGGCACTGGTGCCACCTTCCAAGTCGACAAGTGGACGCGTGACGG
GGGATTAAGTCATGGAGCCACCTGCGTATTGGAAGGCGGGGCGTTCATCG
AAAAAGGCGCTGTCAGTGTCTCCATTATCAAGGGCGTCCTTTCCAAGGAG
AGGGCCGCCGCTATGAGCTCCAGAGGGCGAGACCTCGGCGGCAACACGGA
GGGAGGGGTGCAGTACGCCGCCGCCGCCTTGTCCCTCGTCCTCCATTCGG
CCAACCCCCATCTGCCAACGTTTAGGAGCGATGTCCGTTATTTTGAGTGC
CAGGGCAGGGGCTGGTTCGGCGGCGGGGCGGACCTGACTCCCTACTATCT
CCACGACGGGGATATCGCCGCCTTCCACGCCCTCTATCGCGGCCTCTGTG
ATGCCTTCGACCCCACCAAGGCCCTCTTTCCCAGGTACAAGAAGTGGTGC
GACTCCTACTTCTACCTACCCGGAAGACAAGAACACCGAGGTGTCGGCGG
AATCTTCTTCGATGACCTGGAGGGGATGGAGGGAGGGATGGAGGAAGGAG
CGGAGGGGAAGGAGGAGGAAAAGGAGGAGGAGGAGAGAGGGGGGGAAGGA
CGGAAGGAGGGAAGGGTGGAGAAGGCGAGGAGATTTACGGAGGCGGTGGC
CCGTAGTTTCATGCCCAGCTATTTATCGCGTGAGTGTGCTGTGCTGGTTA
TATTGGTTTGA
back to top
Synonyms
Publications