NO06G04360.1, NO06G04360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04360.1
Unique NameNO06G04360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2315
Alignment locationchr6:1225377..1228199 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1225377..1228199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G04360.1 vs.
Match: XP_005854768.1 (hypothetical protein NGA_0115702 [Nannochloropsis gaditana CCMP526]; XP_005855416.1 hypothetical protein NGA_0115701 [Nannochloropsis gaditana CCMP526]; EKU20947.1 hypothetical protein NGA_0115701 [Nannochloropsis gaditana CCMP526]; EKU21595.1 hypothetical protein NGA_0115702 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 235.0 bits (598), Expect = 4.300e-58
Identity = 129/246 (52.44%), Postives = 165/246 (67.07%), Query Frame = 0 
Query:  169 ALEKDMMCDPAAVDGMMDEMDDIEICATDWARFYDRAMGVSWNGRTVQSQGEMIELFCATPCGPVFDGMLKDFRDACQEGKGRMMEALQEGVQAGEEEGE--EGDAGRWVHVPEFNRLLYRMLGFVGTYGCMQDSDTGMLCAELTVRSLSSSASAR-KPPSYDAASSSGSTKKNESSPETKKPTAAAEEARVKQQKCAYYTSCCFGEMMKTLRLAEQDKVMEGLERDCPGATAAAAASCERSAAGG 412
            A  KD MCDP  VD  +D++D    C   W  FYDR + V++N RT++SQ   I  FC++PCGP+FD  +++FR+ACQEG  RM E   E  +  EEE E  EG+ G W+ VP    L+YRM GF+GT+GC QD+ +G LCAEL VRSLS+SASA    P+  A +  G+ K  ++  E  +  AA  +A  K++KCAYYTSCCFGEMMKTLRL EQ +++EGLER CPGA  AA ASC RSAA G
Sbjct:  166 AKRKDKMCDPTPVDRRVDQLDLEGACVGSWGGFYDRIVSVTFNARTLESQALRISSFCSSPCGPLFDRQVREFRNACQEGLMRMEEQEDEEEEEEEEEMEAGEGEEGTWIPVPSEELLIYRMTGFIGTFGCAQDTVSGRLCAELIVRSLSASASANVGTPTGVAWTKIGNGKHRKADRE--REAAATAQALAKKEKCAYYTSCCFGEMMKTLRLGEQAELVEGLERVCPGAREAANASCSRSAASG 409
The following BLAST results are available for this feature:
BLAST of NO06G04360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
2004006008001000120014001600180020002200SequenceXP_005854768.1
Match NameE-valueIdentityDescription
XP_005854768.14.300e-5852.44hypothetical protein NGA_0115702 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04360NO06G04360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04360.1NO06G04360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04360.1.cds1NO06G04360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04360.1.cds2NO06G04360.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04360.1.cds3NO06G04360.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04360.1.cds4NO06G04360.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04360.1 ID=NO06G04360.1|Name=NO06G04360.1|organism=Nannochloropsis oceanica|type=mRNA|length=2315bp
TATGTTTACAAATTTATACATGTTTCTTTGGGTCTTCTACCATTTCTGTA
TGGGAAATTTTATACTTTACAGCAAGGCATCCTGCGGCATTACTGTCCTT
AAATAGTTGGCATTGTTGCCCATCAGGAGTTCGAAAATGCCATCCCCGAG
CTCGAGACGTCTTTCGTACGGGTCAGGCAATTCATCTCCTTCCTCCTTTG
CTCCTGCCACTGCTGCCAATGATGGTGCTGCGACGGGGCGTCTGGGCAGG
ATCTGCCTTTCCTTGTCAATATCATCACCGTGCCCTGGTGTATGCATCCA
ATTTGCACCCCGTTTATCTCCGCCTTCCAATTGCTGTTGCGTAGCTGCAG
GAAGCACAAGGCACAGCGCGAGTGTTACGGCCAGCACGGATAAGCGCCCT
TGGCATGTCCACATGGCTGCGCTATGGGTGGTTGTACGAGAAGCGTGCTG
GTGGGGTTGTGGCCTGTGGATCGTGCGTTGCGTTGCATGTGTCGATGATG
TCGGTGTAAGTGTGTGAGAAAATTGCCTCGCAAGGGCGGATTGATTCTGC
TGCCGCGGGCTTTCGCCCCTGAAGCCACACGCGGCCTGCTAGGGTGGCCC
GGTGTGCCTGTGTTGTGCGTACATGTGTGTGGTAGGGCCAGAAATCACAA
GTGGCAAGCGCAGGAACAGACACGCGGCACAAGCGGCAGACACACCGTTC
GACTTTGTGTCGTGCCATCGCTGTCGAGTGTCGGTCGAGTGCGTCGTTCG
GCTTAAGTCAAAGAAGAATTGCACCAGCAGGTCGGATCGATTGATTTGGC
TTGTTAAAGCACTGTTTGTGTGTCTTGTCCCTTGCTCTTGCACCAAGGGC
AAGAAAACGTGTGTGGCATTATTGTAGCTATACTTACGAATCCAATCAAT
TTGATGAACTAACCGTCCCTGTTTCCGCTCTACCCTGCACTCAACGCAGG
CGCAGCAGCAAACAACAAAAAAGCCCGCCGGACTGCCAACATGCGGCGGC
AGCCACCCTTCTACTGTAGTCACCTCCTCCTCCTCCACGTGCTCCTCCGC
CCCGCTGTACTTCTTCTCACCTTCATACCCGTGACTGCCGCAAGAGCCAT
CTACACGACAGAGTCGGAGCCAAGGGCAGCAACAGCTGATATCGCTCCAT
TCGATGTATATTTCGAGCAAACCACCGTAGGCCTCCTTCGACGCCTTGCT
CCCGCGGATGATCGAGCTGATCGTCTAGTAACAAAAGCCCAAGCTGCCGT
AGAGTCAGCGCCTGTCTCTGTCCCTAGTGACGCCACCGGCGAGACTCCGC
CTGCCGGTACCGATCTTACTATTCCTGCAAACCAAGTAGCAGCAACAGCA
CCAGCGGCACCGATAGCAAAGCCATTACCCACAGGGCGTGCAGCAGAAGC
AATACCATCAGTCGCAATCGAGGGTGCAGAAGCACCAGAAACAGAAGTCC
CAGCAGACCATCTTTCCCCAAAACAAGACGTTGCGCTCCCAACCGCCCTG
GAGAAGGACATGATGTGCGACCCTGCCGCGGTGGATGGCATGATGGACGA
GATGGACGACATCGAGATCTGTGCGACAGACTGGGCTCGGTTCTATGACC
GCGCTATGGGAGTATCGTGGAACGGTCGGACCGTACAATCGCAGGGGGAG
ATGATCGAGCTCTTCTGCGCCACGCCCTGCGGACCCGTGTTCGACGGCAT
GCTCAAGGACTTCCGCGATGCCTGCCAGGAGGGGAAAGGGAGGATGATGG
AGGCACTGCAGGAAGGGGTGCAGGCGGGGGAGGAGGAGGGAGAGGAGGGG
GACGCGGGGAGGTGGGTGCACGTGCCGGAATTCAACCGGCTTCTCTATCG
CATGCTCGGTTTCGTCGGCACATATGGCTGTATGCAGGACAGTGACACAG
GCATGCTCTGCGCCGAGCTCACTGTTCGCTCCCTCTCCTCCTCCGCCAGC
GCTCGCAAACCTCCTTCGTATGACGCTGCCTCCTCCAGCGGCTCCACGAA
AAAGAATGAAAGCAGCCCCGAAACCAAGAAGCCAACTGCCGCTGCGGAGG
AGGCCCGAGTCAAGCAGCAGAAATGCGCCTACTACACCTCATGTTGCTTT
GGGGAGATGATGAAGACCTTGCGGCTGGCCGAGCAGGATAAGGTAATGGA
GGGCCTGGAACGGGACTGTCCAGGGGCTACGGCTGCTGCGGCTGCATCCT
GTGAGAGGAGTGCGGCGGGAGGGAGATGAGGGGAAGGGAGGGAGATGAGG
GGAAGGGAGGGAGGGAGGAGGAAGGGAGGGAGATGAGGGGAAGGGAGGGA
GATGAGGGGAAGGGA
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protein sequence of NO06G04360.1

>NO06G04360.1-protein ID=NO06G04360.1-protein|Name=NO06G04360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MRRQPPFYCSHLLLLHVLLRPAVLLLTFIPVTAARAIYTTESEPRAATAD
IAPFDVYFEQTTVGLLRRLAPADDRADRLVTKAQAAVESAPVSVPSDATG
ETPPAGTDLTIPANQVAATAPAAPIAKPLPTGRAAEAIPSVAIEGAEAPE
TEVPADHLSPKQDVALPTALEKDMMCDPAAVDGMMDEMDDIEICATDWAR
FYDRAMGVSWNGRTVQSQGEMIELFCATPCGPVFDGMLKDFRDACQEGKG
RMMEALQEGVQAGEEEGEEGDAGRWVHVPEFNRLLYRMLGFVGTYGCMQD
SDTGMLCAELTVRSLSSSASARKPPSYDAASSSGSTKKNESSPETKKPTA
AAEEARVKQQKCAYYTSCCFGEMMKTLRLAEQDKVMEGLERDCPGATAAA
AASCERSAAGGR*
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mRNA from alignment at chr6:1225377..1228199-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04360.1 ID=NO06G04360.1|Name=NO06G04360.1|organism=Nannochloropsis oceanica|type=mRNA|length=2823bp|location=Sequence derived from alignment at chr6:1225377..1228199- (Nannochloropsis oceanica)
TATGTTTACAAATTTATACATGTTTCTTTGGGTCTTCTACCATTTCTGTA
TGGGAAATTTTATACTTTACAGCAAGGCATCCTGCGGCATTACTGTCCTT
AAATAGTTGGCATTGTTGCCCATCAGGAGTTCGAAAATGCCATCCCCGAG
CTCGAGACGTCTTTCGTACGGGTCAGGCAATTCATCTCCTTCCTCCTTTG
CTCCTGCCACTGCTGCCAATGATGGTGCTGCGACGGGGCGTCTGGGCAGG
ATCTGCCTTTCCTTGTCAATATCATCACCGTGCCCTGGTGTATGCATCCA
ATTTGCACCCCGTTTATCTCCGCCTTCCAATTGCTGTTGCGTAGCTGCAG
GAAGCACAAGGCACAGCGCGAGTGTTACGGCCAGCACGGATAAGCGCCCT
TGGCATGTCCACATGGCTGCGCTATGGGTGGTTGTACGAGAAGCGTGCTG
GTGGGGTTGTGGCCTGTGGATCGTGCGTTGCGTTGCATGTGTCGATGATG
TCGGTGTAAGTGTGTGAGAAAATTGCCTCGCAAGGGCGGATTGATTCTGC
TGCCGCGGGCTTTCGCCCCTGAAGCCACACGCGGCCTGCTAGGGTGGCCC
GGTGTGCCTGTGTTGTGCGTACATGTGTGTGGTAGGGCCAGAAATCACAA
GTGGCAAGCGCAGGAACAGACACGCGGCACAAGCGGCAGACACACCGTTC
GACTTTGTGTCGTGCCATCGCTGTCGAGTGTCGGTCGAGTGCGTCGTTCG
GCTTAAGTCAAAGAAGAATTGCACCAGCAGGTCGGATCGATTGATTTGGC
TTGTTAAAGCACTGTTTGTGTGTCTTGTCCCTTGCTCTTGCACCAAGGGC
AAGAAAACGTGTGTGGCATTATTGTAGCTATACTTACGAATCCAATCAAT
TTGATGAACTAACCGTCCCTGTTTCCGCTCTACCCTGCACTCAACGCAGG
CGCAGCAGCAAACAACAAAAAAGCCCGCCGGACTGCCAACATGCGGCGGC
AGCCACCCTTCTACTGTAGTCACCTCCTCCTCCTCCACGTGCTCCTCCGC
CCCGCTGTACTTCTTCTCACCTTCATACCCGTGACTGCCGCAAGAGCCAT
CTACACGACAGAGTCGGAGCCAAGGGCAGCAACAGCTGATATCGCTCCAT
TCGATGTATATTTCGAGCAAACCACCGTAGGCCTCCTTCGACGCCTTGCT
CCCGCGGATGATCGAGCTGATCGTCTAGTAACAAAAGCCCAAGCTGCCGT
AGAGTCAGCGCCTGTCTCTGTCCCTAGTGACGCCACCGGCGAGACTCCGC
CTGCCGGTACCGATCTTACTATTCCTGCAAACCAAGTAGCAGCAACAGCA
CCAGCGGCACCGATAGCAAAGCCATTACCCACAGGGCGTGCAGCAGAAGC
AATACCATCAGTCGCAATCGAGGGTGCAGAAGCACCAGAAACAGAAGTCC
CAGCAGACCATCTTTCCCCAAAACAAGACGTTGCGCTCCCAACCGCCCTG
GAGAAGGACATGATGTGCGACCCTGCCGCGGTGGATGGCATGATGGACGA
GATGGACGACATCGAGATCTGTGCGACAGACTGGGCTCGGTTCTATGACC
GCGCTATGGGAGTATCGTGGAACGGTCGGACCGTACAATCGCAGGGGGAG
ATGATCGAGCTCTTCTGCGCCACGCCCTGCGGACCCGTGTTCGACGGCAT
GCTCAAGGACTTCCGCGATGCCTGCCAGGAGGGGAAAGGGAGGATGATGG
AGGCACTGCAGGAAGGGGTGCAGGCGGGGGAGGAGGAGGGAGAGGAGGGG
GACGCGGGGAGGTGGGTGCACGTGCCGGAATTCAACCGGCTTCTCTATCG
CATGCTCGGTGAGGCAATTGGGAGGGAGGGAGGGAAGGGAGGAGAGGTGT
GCACGCATCTGTGCGCACCCCCCGGTGTGCTGCGGGGCCATCTCCTCGCT
TGGCCTAGTCATCTCAATCCCTCCTTTCAGCCAACTTTCATCTCCTCATC
TGCCCTCCCTCCCTCCGTCGCCCCCCACCCAAGGTTTCGTCGGCACATAT
GGCTGTATGCAGGACAGTGACACAGGCATGCTCTGCGCCGAGCTCACTGT
TCGCTCCCTCTCCTCCTCCGCCAGCGCTCGCAAACCTCCTTCGTATGGTA
CATATCACATTCCCCTCCCTCCCTCCCTCCCTCCACCCTCCCTCCCTCCC
TCCTTCCTCACGAACTTCATTCGTCTCCTTCGTATACTCACCCACGCGGG
CATTGCCTGACCCTGGACACTCATCGCGCCTTCCCTACCCCCCGCCCTCC
TCCCCTCCTCCCACCCTCCTCTCTCACTTTATCCCAGACGCTGCCTCCTC
CAGCGGCTCCACGAAAAAGAATGAAAGCAGCCCCGAAACCAAGAAGCCAA
CTGCCGCTGCGGAGGAGGCCCGAGTCAAGCAGCAGAAATGCGCCTACTAC
ACCTCATGTTGCTTTGGGGAGATGATGAAGACCTTGCGGCTGGCCGAGCA
GGTAGGTAGGTGGGGAGAAAGGGAGGAAGGGAGGGAGGGAGGGAGGGGAG
GGGTGTGGTTCAAGAAGGCTGTCGAGGATACGTGACGGTTACTCACTCGG
ATACATTTCATTTGTTTATCTATCTCTTTTTGTGGGTGTTACAGGATAAG
GTAATGGAGGGCCTGGAACGGGACTGTCCAGGGGCTACGGCTGCTGCGGC
TGCATCCTGTGAGAGGAGTGCGGCGGGAGGGAGATGAGGGGAAGGGAGGG
AGATGAGGGGAAGGGAGGGAGGGAGGAGGAAGGGAGGGAGATGAGGGGAA
GGGAGGGAGATGAGGGGAAGGGA
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Coding sequence (CDS) from alignment at chr6:1225377..1228199-

>NO06G04360.1 ID=NO06G04360.1|Name=NO06G04360.1|organism=Nannochloropsis oceanica|type=CDS|length=1239bp|location=Sequence derived from alignment at chr6:1225377..1228199- (Nannochloropsis oceanica)
ATGCGGCGGCAGCCACCCTTCTACTGTAGTCACCTCCTCCTCCTCCACGT
GCTCCTCCGCCCCGCTGTACTTCTTCTCACCTTCATACCCGTGACTGCCG
CAAGAGCCATCTACACGACAGAGTCGGAGCCAAGGGCAGCAACAGCTGAT
ATCGCTCCATTCGATGTATATTTCGAGCAAACCACCGTAGGCCTCCTTCG
ACGCCTTGCTCCCGCGGATGATCGAGCTGATCGTCTAGTAACAAAAGCCC
AAGCTGCCGTAGAGTCAGCGCCTGTCTCTGTCCCTAGTGACGCCACCGGC
GAGACTCCGCCTGCCGGTACCGATCTTACTATTCCTGCAAACCAAGTAGC
AGCAACAGCACCAGCGGCACCGATAGCAAAGCCATTACCCACAGGGCGTG
CAGCAGAAGCAATACCATCAGTCGCAATCGAGGGTGCAGAAGCACCAGAA
ACAGAAGTCCCAGCAGACCATCTTTCCCCAAAACAAGACGTTGCGCTCCC
AACCGCCCTGGAGAAGGACATGATGTGCGACCCTGCCGCGGTGGATGGCA
TGATGGACGAGATGGACGACATCGAGATCTGTGCGACAGACTGGGCTCGG
TTCTATGACCGCGCTATGGGAGTATCGTGGAACGGTCGGACCGTACAATC
GCAGGGGGAGATGATCGAGCTCTTCTGCGCCACGCCCTGCGGACCCGTGT
TCGACGGCATGCTCAAGGACTTCCGCGATGCCTGCCAGGAGGGGAAAGGG
AGGATGATGGAGGCACTGCAGGAAGGGGTGCAGGCGGGGGAGGAGGAGGG
AGAGGAGGGGGACGCGGGGAGGTGGGTGCACGTGCCGGAATTCAACCGGC
TTCTCTATCGCATGCTCGGTTTCGTCGGCACATATGGCTGTATGCAGGAC
AGTGACACAGGCATGCTCTGCGCCGAGCTCACTGTTCGCTCCCTCTCCTC
CTCCGCCAGCGCTCGCAAACCTCCTTCGTATGACGCTGCCTCCTCCAGCG
GCTCCACGAAAAAGAATGAAAGCAGCCCCGAAACCAAGAAGCCAACTGCC
GCTGCGGAGGAGGCCCGAGTCAAGCAGCAGAAATGCGCCTACTACACCTC
ATGTTGCTTTGGGGAGATGATGAAGACCTTGCGGCTGGCCGAGCAGGATA
AGGTAATGGAGGGCCTGGAACGGGACTGTCCAGGGGCTACGGCTGCTGCG
GCTGCATCCTGTGAGAGGAGTGCGGCGGGAGGGAGATGA
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Synonyms
Publications