NO06G04360.1, NO06G04360.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G04360.1
Unique Name	NO06G04360.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2315
Alignment location	chr6:1225377..1228199 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:1225377..1228199 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO06G04360.1 vs.
Match: XP_005854768.1 (hypothetical protein NGA_0115702 [Nannochloropsis gaditana CCMP526]; XP_005855416.1 hypothetical protein NGA_0115701 [Nannochloropsis gaditana CCMP526]; EKU20947.1 hypothetical protein NGA_0115701 [Nannochloropsis gaditana CCMP526]; EKU21595.1 hypothetical protein NGA_0115702 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 235.0 bits (598), Expect = 4.300e-58
Identity = 129/246 (52.44%), Postives = 165/246 (67.07%), Query Frame = 0

Query:  169 ALEKDMMCDPAAVDGMMDEMDDIEICATDWARFYDRAMGVSWNGRTVQSQGEMIELFCATPCGPVFDGMLKDFRDACQEGKGRMMEALQEGVQAGEEEGE--EGDAGRWVHVPEFNRLLYRMLGFVGTYGCMQDSDTGMLCAELTVRSLSSSASAR-KPPSYDAASSSGSTKKNESSPETKKPTAAAEEARVKQQKCAYYTSCCFGEMMKTLRLAEQDKVMEGLERDCPGATAAAAASCERSAAGG 412
            A  KD MCDP  VD  +D++D    C   W  FYDR + V++N RT++SQ   I  FC++PCGP+FD  +++FR+ACQEG  RM E   E  +  EEE E  EG+ G W+ VP    L+YRM GF+GT+GC QD+ +G LCAEL VRSLS+SASA    P+  A +  G+ K  ++  E  +  AA  +A  K++KCAYYTSCCFGEMMKTLRL EQ +++EGLER CPGA  AA ASC RSAA G
Sbjct:  166 AKRKDKMCDPTPVDRRVDQLDLEGACVGSWGGFYDRIVSVTFNARTLESQALRISSFCSSPCGPLFDRQVREFRNACQEGLMRMEEQEDEEEEEEEEEMEAGEGEEGTWIPVPSEELLIYRMTGFIGTFGCAQDTVSGRLCAELIVRSLSASASANVGTPTGVAWTKIGNGKHRKADRE--REAAATAQALAKKEKCAYYTSCCFGEMMKTLRLGEQAELVEGLERVCPGAREAANASCSRSAASG 409

The following BLAST results are available for this feature:

BLAST of NO06G04360.1 vs.

BLAST of NO06G04360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005854768.1	4.300e-58	52.44	hypothetical protein NGA_0115702 [Nannochloropsis ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO06G04360	NO06G04360	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO06G04360.1	NO06G04360.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO06G04360.1.cds1	NO06G04360.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G04360.1.cds2	NO06G04360.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G04360.1.cds3	NO06G04360.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G04360.1.cds4	NO06G04360.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr6:1225377..1228199-
coding sequence from alignment at chr6:1225377..1228199-

mRNA sequence

>NO06G04360.1 ID=NO06G04360.1|Name=NO06G04360.1|organism=Nannochloropsis oceanica|type=mRNA|length=2315bp
TATGTTTACAAATTTATACATGTTTCTTTGGGTCTTCTACCATTTCTGTA
TGGGAAATTTTATACTTTACAGCAAGGCATCCTGCGGCATTACTGTCCTT
AAATAGTTGGCATTGTTGCCCATCAGGAGTTCGAAAATGCCATCCCCGAG
CTCGAGACGTCTTTCGTACGGGTCAGGCAATTCATCTCCTTCCTCCTTTG
CTCCTGCCACTGCTGCCAATGATGGTGCTGCGACGGGGCGTCTGGGCAGG
ATCTGCCTTTCCTTGTCAATATCATCACCGTGCCCTGGTGTATGCATCCA
ATTTGCACCCCGTTTATCTCCGCCTTCCAATTGCTGTTGCGTAGCTGCAG
GAAGCACAAGGCACAGCGCGAGTGTTACGGCCAGCACGGATAAGCGCCCT
TGGCATGTCCACATGGCTGCGCTATGGGTGGTTGTACGAGAAGCGTGCTG
GTGGGGTTGTGGCCTGTGGATCGTGCGTTGCGTTGCATGTGTCGATGATG
TCGGTGTAAGTGTGTGAGAAAATTGCCTCGCAAGGGCGGATTGATTCTGC
TGCCGCGGGCTTTCGCCCCTGAAGCCACACGCGGCCTGCTAGGGTGGCCC
GGTGTGCCTGTGTTGTGCGTACATGTGTGTGGTAGGGCCAGAAATCACAA
GTGGCAAGCGCAGGAACAGACACGCGGCACAAGCGGCAGACACACCGTTC
GACTTTGTGTCGTGCCATCGCTGTCGAGTGTCGGTCGAGTGCGTCGTTCG
GCTTAAGTCAAAGAAGAATTGCACCAGCAGGTCGGATCGATTGATTTGGC
TTGTTAAAGCACTGTTTGTGTGTCTTGTCCCTTGCTCTTGCACCAAGGGC
AAGAAAACGTGTGTGGCATTATTGTAGCTATACTTACGAATCCAATCAAT
TTGATGAACTAACCGTCCCTGTTTCCGCTCTACCCTGCACTCAACGCAGG
CGCAGCAGCAAACAACAAAAAAGCCCGCCGGACTGCCAACATGCGGCGGC
AGCCACCCTTCTACTGTAGTCACCTCCTCCTCCTCCACGTGCTCCTCCGC
CCCGCTGTACTTCTTCTCACCTTCATACCCGTGACTGCCGCAAGAGCCAT
CTACACGACAGAGTCGGAGCCAAGGGCAGCAACAGCTGATATCGCTCCAT
TCGATGTATATTTCGAGCAAACCACCGTAGGCCTCCTTCGACGCCTTGCT
CCCGCGGATGATCGAGCTGATCGTCTAGTAACAAAAGCCCAAGCTGCCGT
AGAGTCAGCGCCTGTCTCTGTCCCTAGTGACGCCACCGGCGAGACTCCGC
CTGCCGGTACCGATCTTACTATTCCTGCAAACCAAGTAGCAGCAACAGCA
CCAGCGGCACCGATAGCAAAGCCATTACCCACAGGGCGTGCAGCAGAAGC
AATACCATCAGTCGCAATCGAGGGTGCAGAAGCACCAGAAACAGAAGTCC
CAGCAGACCATCTTTCCCCAAAACAAGACGTTGCGCTCCCAACCGCCCTG
GAGAAGGACATGATGTGCGACCCTGCCGCGGTGGATGGCATGATGGACGA
GATGGACGACATCGAGATCTGTGCGACAGACTGGGCTCGGTTCTATGACC
GCGCTATGGGAGTATCGTGGAACGGTCGGACCGTACAATCGCAGGGGGAG
ATGATCGAGCTCTTCTGCGCCACGCCCTGCGGACCCGTGTTCGACGGCAT
GCTCAAGGACTTCCGCGATGCCTGCCAGGAGGGGAAAGGGAGGATGATGG
AGGCACTGCAGGAAGGGGTGCAGGCGGGGGAGGAGGAGGGAGAGGAGGGG
GACGCGGGGAGGTGGGTGCACGTGCCGGAATTCAACCGGCTTCTCTATCG
CATGCTCGGTTTCGTCGGCACATATGGCTGTATGCAGGACAGTGACACAG
GCATGCTCTGCGCCGAGCTCACTGTTCGCTCCCTCTCCTCCTCCGCCAGC
GCTCGCAAACCTCCTTCGTATGACGCTGCCTCCTCCAGCGGCTCCACGAA
AAAGAATGAAAGCAGCCCCGAAACCAAGAAGCCAACTGCCGCTGCGGAGG
AGGCCCGAGTCAAGCAGCAGAAATGCGCCTACTACACCTCATGTTGCTTT
GGGGAGATGATGAAGACCTTGCGGCTGGCCGAGCAGGATAAGGTAATGGA
GGGCCTGGAACGGGACTGTCCAGGGGCTACGGCTGCTGCGGCTGCATCCT
GTGAGAGGAGTGCGGCGGGAGGGAGATGAGGGGAAGGGAGGGAGATGAGG
GGAAGGGAGGGAGGGAGGAGGAAGGGAGGGAGATGAGGGGAAGGGAGGGA
GATGAGGGGAAGGGA

protein sequence of NO06G04360.1

>NO06G04360.1-protein ID=NO06G04360.1-protein|Name=NO06G04360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MRRQPPFYCSHLLLLHVLLRPAVLLLTFIPVTAARAIYTTESEPRAATAD
IAPFDVYFEQTTVGLLRRLAPADDRADRLVTKAQAAVESAPVSVPSDATG
ETPPAGTDLTIPANQVAATAPAAPIAKPLPTGRAAEAIPSVAIEGAEAPE
TEVPADHLSPKQDVALPTALEKDMMCDPAAVDGMMDEMDDIEICATDWAR
FYDRAMGVSWNGRTVQSQGEMIELFCATPCGPVFDGMLKDFRDACQEGKG
RMMEALQEGVQAGEEEGEEGDAGRWVHVPEFNRLLYRMLGFVGTYGCMQD
SDTGMLCAELTVRSLSSSASARKPPSYDAASSSGSTKKNESSPETKKPTA
AAEEARVKQQKCAYYTSCCFGEMMKTLRLAEQDKVMEGLERDCPGATAAA
AASCERSAAGGR*

mRNA from alignment at chr6:1225377..1228199-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO06G04360.1 ID=NO06G04360.1|Name=NO06G04360.1|organism=Nannochloropsis oceanica|type=mRNA|length=2823bp|location=Sequence derived from alignment at chr6:1225377..1228199- (Nannochloropsis oceanica)
TATGTTTACAAATTTATACATGTTTCTTTGGGTCTTCTACCATTTCTGTA
TGGGAAATTTTATACTTTACAGCAAGGCATCCTGCGGCATTACTGTCCTT
AAATAGTTGGCATTGTTGCCCATCAGGAGTTCGAAAATGCCATCCCCGAG
CTCGAGACGTCTTTCGTACGGGTCAGGCAATTCATCTCCTTCCTCCTTTG
CTCCTGCCACTGCTGCCAATGATGGTGCTGCGACGGGGCGTCTGGGCAGG
ATCTGCCTTTCCTTGTCAATATCATCACCGTGCCCTGGTGTATGCATCCA
ATTTGCACCCCGTTTATCTCCGCCTTCCAATTGCTGTTGCGTAGCTGCAG
GAAGCACAAGGCACAGCGCGAGTGTTACGGCCAGCACGGATAAGCGCCCT
TGGCATGTCCACATGGCTGCGCTATGGGTGGTTGTACGAGAAGCGTGCTG
GTGGGGTTGTGGCCTGTGGATCGTGCGTTGCGTTGCATGTGTCGATGATG
TCGGTGTAAGTGTGTGAGAAAATTGCCTCGCAAGGGCGGATTGATTCTGC
TGCCGCGGGCTTTCGCCCCTGAAGCCACACGCGGCCTGCTAGGGTGGCCC
GGTGTGCCTGTGTTGTGCGTACATGTGTGTGGTAGGGCCAGAAATCACAA
GTGGCAAGCGCAGGAACAGACACGCGGCACAAGCGGCAGACACACCGTTC
GACTTTGTGTCGTGCCATCGCTGTCGAGTGTCGGTCGAGTGCGTCGTTCG
GCTTAAGTCAAAGAAGAATTGCACCAGCAGGTCGGATCGATTGATTTGGC
TTGTTAAAGCACTGTTTGTGTGTCTTGTCCCTTGCTCTTGCACCAAGGGC
AAGAAAACGTGTGTGGCATTATTGTAGCTATACTTACGAATCCAATCAAT
TTGATGAACTAACCGTCCCTGTTTCCGCTCTACCCTGCACTCAACGCAGG
CGCAGCAGCAAACAACAAAAAAGCCCGCCGGACTGCCAACATGCGGCGGC
AGCCACCCTTCTACTGTAGTCACCTCCTCCTCCTCCACGTGCTCCTCCGC
CCCGCTGTACTTCTTCTCACCTTCATACCCGTGACTGCCGCAAGAGCCAT
CTACACGACAGAGTCGGAGCCAAGGGCAGCAACAGCTGATATCGCTCCAT
TCGATGTATATTTCGAGCAAACCACCGTAGGCCTCCTTCGACGCCTTGCT
CCCGCGGATGATCGAGCTGATCGTCTAGTAACAAAAGCCCAAGCTGCCGT
AGAGTCAGCGCCTGTCTCTGTCCCTAGTGACGCCACCGGCGAGACTCCGC
CTGCCGGTACCGATCTTACTATTCCTGCAAACCAAGTAGCAGCAACAGCA
CCAGCGGCACCGATAGCAAAGCCATTACCCACAGGGCGTGCAGCAGAAGC
AATACCATCAGTCGCAATCGAGGGTGCAGAAGCACCAGAAACAGAAGTCC
CAGCAGACCATCTTTCCCCAAAACAAGACGTTGCGCTCCCAACCGCCCTG
GAGAAGGACATGATGTGCGACCCTGCCGCGGTGGATGGCATGATGGACGA
GATGGACGACATCGAGATCTGTGCGACAGACTGGGCTCGGTTCTATGACC
GCGCTATGGGAGTATCGTGGAACGGTCGGACCGTACAATCGCAGGGGGAG
ATGATCGAGCTCTTCTGCGCCACGCCCTGCGGACCCGTGTTCGACGGCAT
GCTCAAGGACTTCCGCGATGCCTGCCAGGAGGGGAAAGGGAGGATGATGG
AGGCACTGCAGGAAGGGGTGCAGGCGGGGGAGGAGGAGGGAGAGGAGGGG
GACGCGGGGAGGTGGGTGCACGTGCCGGAATTCAACCGGCTTCTCTATCG
CATGCTCGGTGAGGCAATTGGGAGGGAGGGAGGGAAGGGAGGAGAGGTGT
GCACGCATCTGTGCGCACCCCCCGGTGTGCTGCGGGGCCATCTCCTCGCT
TGGCCTAGTCATCTCAATCCCTCCTTTCAGCCAACTTTCATCTCCTCATC
TGCCCTCCCTCCCTCCGTCGCCCCCCACCCAAGGTTTCGTCGGCACATAT
GGCTGTATGCAGGACAGTGACACAGGCATGCTCTGCGCCGAGCTCACTGT
TCGCTCCCTCTCCTCCTCCGCCAGCGCTCGCAAACCTCCTTCGTATGGTA
CATATCACATTCCCCTCCCTCCCTCCCTCCCTCCACCCTCCCTCCCTCCC
TCCTTCCTCACGAACTTCATTCGTCTCCTTCGTATACTCACCCACGCGGG
CATTGCCTGACCCTGGACACTCATCGCGCCTTCCCTACCCCCCGCCCTCC
TCCCCTCCTCCCACCCTCCTCTCTCACTTTATCCCAGACGCTGCCTCCTC
CAGCGGCTCCACGAAAAAGAATGAAAGCAGCCCCGAAACCAAGAAGCCAA
CTGCCGCTGCGGAGGAGGCCCGAGTCAAGCAGCAGAAATGCGCCTACTAC
ACCTCATGTTGCTTTGGGGAGATGATGAAGACCTTGCGGCTGGCCGAGCA
GGTAGGTAGGTGGGGAGAAAGGGAGGAAGGGAGGGAGGGAGGGAGGGGAG
GGGTGTGGTTCAAGAAGGCTGTCGAGGATACGTGACGGTTACTCACTCGG
ATACATTTCATTTGTTTATCTATCTCTTTTTGTGGGTGTTACAGGATAAG
GTAATGGAGGGCCTGGAACGGGACTGTCCAGGGGCTACGGCTGCTGCGGC
TGCATCCTGTGAGAGGAGTGCGGCGGGAGGGAGATGAGGGGAAGGGAGGG
AGATGAGGGGAAGGGAGGGAGGGAGGAGGAAGGGAGGGAGATGAGGGGAA
GGGAGGGAGATGAGGGGAAGGGA

Coding sequence (CDS) from alignment at chr6:1225377..1228199-

>NO06G04360.1 ID=NO06G04360.1|Name=NO06G04360.1|organism=Nannochloropsis oceanica|type=CDS|length=1239bp|location=Sequence derived from alignment at chr6:1225377..1228199- (Nannochloropsis oceanica)
ATGCGGCGGCAGCCACCCTTCTACTGTAGTCACCTCCTCCTCCTCCACGT
GCTCCTCCGCCCCGCTGTACTTCTTCTCACCTTCATACCCGTGACTGCCG
CAAGAGCCATCTACACGACAGAGTCGGAGCCAAGGGCAGCAACAGCTGAT
ATCGCTCCATTCGATGTATATTTCGAGCAAACCACCGTAGGCCTCCTTCG
ACGCCTTGCTCCCGCGGATGATCGAGCTGATCGTCTAGTAACAAAAGCCC
AAGCTGCCGTAGAGTCAGCGCCTGTCTCTGTCCCTAGTGACGCCACCGGC
GAGACTCCGCCTGCCGGTACCGATCTTACTATTCCTGCAAACCAAGTAGC
AGCAACAGCACCAGCGGCACCGATAGCAAAGCCATTACCCACAGGGCGTG
CAGCAGAAGCAATACCATCAGTCGCAATCGAGGGTGCAGAAGCACCAGAA
ACAGAAGTCCCAGCAGACCATCTTTCCCCAAAACAAGACGTTGCGCTCCC
AACCGCCCTGGAGAAGGACATGATGTGCGACCCTGCCGCGGTGGATGGCA
TGATGGACGAGATGGACGACATCGAGATCTGTGCGACAGACTGGGCTCGG
TTCTATGACCGCGCTATGGGAGTATCGTGGAACGGTCGGACCGTACAATC
GCAGGGGGAGATGATCGAGCTCTTCTGCGCCACGCCCTGCGGACCCGTGT
TCGACGGCATGCTCAAGGACTTCCGCGATGCCTGCCAGGAGGGGAAAGGG
AGGATGATGGAGGCACTGCAGGAAGGGGTGCAGGCGGGGGAGGAGGAGGG
AGAGGAGGGGGACGCGGGGAGGTGGGTGCACGTGCCGGAATTCAACCGGC
TTCTCTATCGCATGCTCGGTTTCGTCGGCACATATGGCTGTATGCAGGAC
AGTGACACAGGCATGCTCTGCGCCGAGCTCACTGTTCGCTCCCTCTCCTC
CTCCGCCAGCGCTCGCAAACCTCCTTCGTATGACGCTGCCTCCTCCAGCG
GCTCCACGAAAAAGAATGAAAGCAGCCCCGAAACCAAGAAGCCAACTGCC
GCTGCGGAGGAGGCCCGAGTCAAGCAGCAGAAATGCGCCTACTACACCTC
ATGTTGCTTTGGGGAGATGATGAAGACCTTGCGGCTGGCCGAGCAGGATA
AGGTAATGGAGGGCCTGGAACGGGACTGTCCAGGGGCTACGGCTGCTGCG
GCTGCATCCTGTGAGAGGAGTGCGGCGGGAGGGAGATGA

Synonyms

Publications