NO06G03600.3, NO06G03600.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G03600.3
Unique Name	NO06G03600.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2560
Alignment location	chr6:988011..991201 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:988011..991201 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO06G03600.3 vs.
Match: EWM26364.1 (fumarate hydratase [Nannochloropsis gaditana])

HSP 1 Score: 704.5 bits (1817), Expect = 2.000e-199
Identity = 349/416 (83.89%), Postives = 383/416 (92.07%), Query Frame = 0

Query:   16 LQALGVIKKAAAKTNASLGLLPLDIALLIDKAADEVIAGKLDDHFPLRIWQTGSGTQSNMNANEVISNRAIEMAGGKMGSKDPVHSNDHVNRSQSSNDVFPTAMHVAAVLYISDFLLPELERLHADLEEKAGKWKGIVKIGRTHLQDAVPMTLGQEFGGYAAAVEVDIKAIRHALQDLYFLAQGGTAVGTGLNTHPDFAVAVAKEISVLTGKPFVSAPNKFHALASHGPMALMSGALKALAGDLFKIANDVRFLASGPRCGLGELNLPENEPGSSIMPGKVNPTQCEALTMVCVQVMGNDAAIGFASSQGAFELNVFKPVIIHNLLQSCRLMHDSARNFREYALEGLSVNEDKLNKYVHESLMTVTALNPHIGYDKAAKIAMKAHHEKSTLREAALALGYLTAEEFDEWLQPEKMV 432
            +QALG++KKAAAKTNA LGLL  DIA LID+AADEVI+G LD HFPLRIWQTGSGTQSNMNANEVISNRAIEMAGG MGSK PVH+NDHVNRSQSSNDVFPTAMHVAAVLY+SD LLP+L  L   LE+KA  ++G+VKIGRTHLQDAVPMTLGQEFGGYAAA+EVD++ I HALQ+LY LAQGGTAVGTGLNTHP FAV VA EI+ LTGKPFV+APNKF ALASHGP+ L+SGALKA A DLFKIANDVRFLASGPRCGLGELNLPENEPGSSIMPGKVNPTQCEA+TMVC QVMGNDAAIGFA+SQGAFELNVFKPVII NL+QSC L+HDSARNFREYALEGL+VN+D+++KYVHESLMTVTALNPHIGYDKAA+IA KAHHEKSTL+EAALALG LTAE++D W+QPEKMV
Sbjct:  124 IQALGIVKKAAAKTNAELGLLTPDIAALIDRAADEVISGALDAHFPLRIWQTGSGTQSNMNANEVISNRAIEMAGGTMGSKLPVHANDHVNRSQSSNDVFPTAMHVAAVLYVSDALLPQLRSLQGALEDKAQAFQGMVKIGRTHLQDAVPMTLGQEFGGYAAALEVDVQGIAHALQELYPLAQGGTAVGTGLNTHPKFAVTVAAEIARLTGKPFVTAPNKFQALASHGPVVLLSGALKAAAADLFKIANDVRFLASGPRCGLGELNLPENEPGSSIMPGKVNPTQCEAMTMVCAQVMGNDAAIGFAASQGAFELNVFKPVIIQNLMQSCHLLHDSARNFREYALEGLTVNQDRIDKYVHESLMTVTALNPHIGYDKAAQIAKKAHHEKSTLKEAALALGILTAEQYDAWVQPEKMV 539

The following BLAST results are available for this feature:

BLAST of NO06G03600.3 vs.

BLAST of NO06G03600.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26364.1	2.000e-199	83.89	fumarate hydratase [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO06G03600	NO06G03600	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO06G03600.3	NO06G03600.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO06G03600.3.cds1	NO06G03600.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G03600.3.cds2	NO06G03600.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G03600.3.cds3	NO06G03600.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G03600.3.cds4	NO06G03600.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr6:988011..991201+
coding sequence from alignment at chr6:988011..991201+

mRNA sequence

>NO06G03600.3 ID=NO06G03600.3|Name=NO06G03600.3|organism=Nannochloropsis oceanica|type=mRNA|length=2560bp
AGAAGAGCTATATTTTTAATCATTCAATTATTTTATGAGGGGATGGTGGT
TGGGTTTGGAATGTTGAAGGATGTGAAAGTAAAGTGTACCACTGTGAGGA
ATTGTGAACCAATTCCCATCCCTCGTCCCAAATCTCAAGATATACACTTA
TTTTTTGGGTCGTGGTTTGCGGCCCGAATCGTGACCCATATTGATTTTTC
GTCCCAATATTCCGCGACCCAAATCCCAAGATATACACTCCCTAATTAAA
TAATCCGGCGACGCTAGCGAGTTCGATTATCTAAGTCGAATCTGGTGGGG
ACGCTTGTGCATGTGGGCACAAGCATTCCTTTGTCATTGCTGGGGGCATG
GGGCTCTACAGGAGCCTTTCCAAAATACACAGAACAAATCCATCGATTAA
TCAACGCCTTCAACTCCCGCAACGCAGGCACTTGCACCATCAATACTGCC
TGCAAGGCGTGGTACATAACGTTTTTCAGCCTTCAGCACCACGACATGCG
TTGGTTGCCGACGCCATCCTTCTTGCTGTCCACTACCTCTTCCGCTTTAC
GCTTTTCTTCCCCTTCCGTCTTGCGACGCCCATCCACTCTCGTTCAACAA
CAGGGTCTGCTAGCACTTGGCTTCACCCGTCCCTTCTTGTTTCACCTCCA
GCACCACCACCAGCAGCGGCACTCTTTACCGGAGCTCTCGCAACGTTTGT
CCCCTTCCTTAAATATCCGCGCACATTCGACCACCGCGTCCACCACGACC
ATGGCCACTCGCGAGGAAAAGGACAGCATGGGCCTTATCCAGGTCCCAGT
CGACCGCTATTGGGGTGCACAGACGCAGCGTTCCCTCAAGTACTTCAACA
TTGGGCATGATACCATGCCCCGAGAAGTCATCCAGGTGAGGAGTCTCCAT
GAGACACTCCCTCCGTCCGTCCCTCCCTCCCTCTCTCCACAGTGTTGAAC
AGCTTATATCCTGTGAAATCGTATAAAATTCGCATTGTTTTCTATTGACA
AATAGCTGTGATGGTCGCGCTCACCTGTAGTCTTCTACTCTCCCTCTTTC
CCTCCTTACAGGCCCTGGGTGTTATAAAAAAAGCAGCGGCGAAAACTAAT
GCTTCTCTCGGTCTCCTCCCTCTTGATATTGCCCTCCTGATCGATAAAGC
CGCAGATGAGGTGATTGCTGGAAAGCTCGACGATCATTTCCCTTTGCGGA
TCTGGCAGACGGGCTCAGGGACCCAAAGTAACATGAATGCAAACGAAGTA
ATTTCCAATCGGGCGATTGAGATGGCCGGGGGTAAGATGGGGAGTAAAGA
CCCGGTGCATTCCAATGACCACGTGAACAGGTCGCAGAGTAGCAACGACG
TCTTCCCGACGGCTATGCATGTGGCGGCTGTGTTGTATATATCCGATTTC
CTCCTACCGGAGCTCGAGCGGTTGCACGCCGACTTGGAGGAGAAAGCAGG
GAAGTGGAAGGGGATCGTGAAAATTGGACGCACGCACTTGCAGGACGCCG
TGCCCATGACCCTAGGACAGGAATTCGGCGGGTACGCGGCGGCTGTGGAA
GTGGACATCAAGGCCATCCGGCACGCCCTCCAAGATCTCTATTTCCTTGC
TCAAGGCGGAACAGCCGTAGGCACGGGTCTTAACACCCACCCTGACTTCG
CCGTTGCGGTAGCCAAGGAAATTTCCGTCCTGACCGGCAAGCCCTTCGTT
TCCGCCCCCAATAAATTCCACGCACTCGCCTCGCATGGCCCGATGGCGTT
GATGAGCGGGGCCTTGAAGGCTCTTGCGGGCGACCTCTTCAAGATTGCCA
ACGACGTGCGTTTCCTCGCTTCGGGCCCAAGGTGTGGGCTGGGTGAACTC
AATTTACCGGAGAATGAGCCCGGCTCAAGCATCATGCCCGGCAAGGTTAA
CCCGACGCAATGCGAAGCCTTGACGATGGTCTGTGTCCAGGTAATGGGCA
ACGACGCCGCGATTGGATTTGCGTCAAGCCAGGGGGCGTTTGAATTGAAT
GTTTTCAAGCCGGTGATTATCCATAACCTCTTGCAGTCCTGTCGGCTGAT
GCATGACTCGGCCAGGAACTTCCGAGAGTACGCGTTGGAAGGCCTAAGCG
TGAATGAAGACAAGCTCAACAAGTATGTCCACGAGTCCCTTATGACGGTG
ACGGCTCTCAACCCCCACATCGGGTATGATAAGGCCGCGAAAATTGCCAT
GAAAGCCCACCATGAGAAATCGACACTGAGAGAAGCGGCTTTGGCGCTAG
GCTACCTGACGGCGGAGGAATTTGATGAGTGGTTGCAACCGGAGAAAATG
GTCTAAGAAGGGACGAAGGTGAGGGACGGATGGATGGGGGGACGAGACGT
TAGGGTGGGTTGTGTAGGTATCCCAGTGGGTGGAGACAGGGAAATAAGAG
GTGGTACGTTTGGGGTGGTTAGAGTCAGATGGTGAGGGTGAATAAGCGCG
CGCATGACATAGTCACAACAAGAACAACAGCGTGAGATTACGAAGAAGGC
TGTAAACACATGAAGAGGGACGACAAGTAGAAGCAGCGCTAGACATGTTA
ATATTCTCAA

protein sequence of NO06G03600.3

>NO06G03600.3-protein ID=NO06G03600.3-protein|Name=NO06G03600.3|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MVALTCSLLLSLFPSLQALGVIKKAAAKTNASLGLLPLDIALLIDKAADE
VIAGKLDDHFPLRIWQTGSGTQSNMNANEVISNRAIEMAGGKMGSKDPVH
SNDHVNRSQSSNDVFPTAMHVAAVLYISDFLLPELERLHADLEEKAGKWK
GIVKIGRTHLQDAVPMTLGQEFGGYAAAVEVDIKAIRHALQDLYFLAQGG
TAVGTGLNTHPDFAVAVAKEISVLTGKPFVSAPNKFHALASHGPMALMSG
ALKALAGDLFKIANDVRFLASGPRCGLGELNLPENEPGSSIMPGKVNPTQ
CEALTMVCVQVMGNDAAIGFASSQGAFELNVFKPVIIHNLLQSCRLMHDS
ARNFREYALEGLSVNEDKLNKYVHESLMTVTALNPHIGYDKAAKIAMKAH
HEKSTLREAALALGYLTAEEFDEWLQPEKMV*

mRNA from alignment at chr6:988011..991201+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO06G03600.3 ID=NO06G03600.3|Name=NO06G03600.3|organism=Nannochloropsis oceanica|type=mRNA|length=3191bp|location=Sequence derived from alignment at chr6:988011..991201+ (Nannochloropsis oceanica)
AGAAGAGCTATATTTTTAATCATTCAATTATTTTATGAGGGGATGGTGGT
TGGGTTTGGAATGTTGAAGGATGTGAAAGTAAAGTGTACCACTGTGAGGA
ATTGTGAACCAATTCCCATCCCTCGTCCCAAATCTCAAGATATACACTTA
TTTTTTGGGTCGTGGTTTGCGGCCCGAATCGTGACCCATATTGATTTTTC
GTCCCAATATTCCGCGACCCAAATCCCAAGATATACACTCCCTAATTAAA
TAATCCGGCGACGCTAGCGAGTTCGATTATCTAAGTCGAATCTGGTGGGG
ACGCTTGTGCATGTGGGCACAAGCATTCCTTTGTCATTGCTGGGGGCATG
GGGCTCTACAGGAGCCTTTCCAAAATACACAGAACAAATCCATCGATTAA
TCAACGCCTTCAACTCCCGCAACGCAGGCACTTGCACCATCAATACTGCC
TGCAAGGCGTGGTACATAACGTTTTTCAGCCTTCAGCACCACGACATGCG
TTGGTTGCCGACGCCATCCTTCTTGCTGTCCACTACCTCTTCCGCTTTAC
GCTTTTCTTCCCCTTCCGTCTTGCGACGCCCATCCACTCTCGTTCAACAA
CAGGGTCTGCTAGCACTTGGCTTCACCCGTCCCTTCTTGTTTCACCTCCA
GCACCACCACCAGCAGCGGCACTCTTTACCGGAGCTCTCGCAACGTTTGT
CCCCTTCCTTAAATATCCGCGCACATTCGACCACCGCGTCCACCACGACC
ATGGCCACTCGCGAGGAAAAGGACAGGTACGTGCGCACACTTTTCTGGAC
AGAGGACGAAAAGGCATCTTCTTCCTTCGGCCGCCCTCTTGTCGGTAGCT
CGGCCACATCTTGCTTATGTAAATATGGGAATGTGCATAGCACAAGCTGG
GTATTGTGCTTGGTCATATCGCGGCACTTATGGTCTTATCAGATGCATCC
TCAATCTACCCCACTCCCTACTCTCCCACATCTCTCATATCACTCAGCAT
GGGCCTTATCCAGGTCCCAGTCGACCGCTATTGGGGTGCACAGACGCAGC
GTTCCCTCAAGTACTTCAACATTGGGCATGATACCATGCCCCGAGAAGTC
ATCCAGGTGAGGAGTCTCCATGAGACACTCCCTCCGTCCGTCCCTCCCTC
CCTCTCTCCACAGTGTTGAACAGCTTATATCCTGTGAAATCGTATAAAAT
TCGCATTGTTTTCTATTGACAAATAGCTGTGATGGTCGCGCTCACCTGTA
GTCTTCTACTCTCCCTCTTTCCCTCCTTACAGGCCCTGGGTGTTATAAAA
AAAGCAGCGGCGAAAACTAATGCTTCTCTCGGTCTCCTCCCTCTTGATAT
TGCCCTCCTGATCGATAAAGCCGCAGATGAGGTGATTGCTGGAAAGCTCG
ACGATCATTTCCCTTTGCGGATCTGGCAGACGGGCTCAGGGACCCAAAGT
AACATGAATGCAAACGAAGTAATTTCCAATCGGGCGATTGAGATGGCCGG
GGGTAAGATGGGGAGTAAAGACCCGGTGCATTCCAATGACCACGTGAACA
GGTCGCAGAGTAGCAACGACGTCTTCCCGACGGCTATGCATGTGGCGGCT
GTGTTGTATATATCCGATTTCCTCCTACCGGAGCTCGAGCGGTTGCACGC
CGACTTGGAGGAGAAAGTGAGCAAAGAGGAGAGGGAGGGAGGGAAAGGCT
GTACAAGAGTGATTGAGGGTAGCTTTCACTGATCAAGTCTAGAAAGGAAG
GGTTCCGTTCGCTCACATAGACCTATACCACGTGCATTAATAAGGCAGGG
AAGTGGAAGGGGATCGTGAAAATTGGACGCACGCACTTGCAGGACGCCGT
GCCCATGACCCTAGGACAGGAATTCGGCGGGTACGCGGCGGCTGTGGAAG
GTAATATTGACATTTTGCGGAGATTCTTCGAGTCGTGGGCTCATACGTCT
TCCTTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCCTCCGCTCAGTGGACATCAAGGCCATCCGGCACGCCCTCCAAGATCTC
TATTTCCTTGCTCAAGGCGGAACAGCCGTAGGCACGGGTCTTAACACCCA
CCCTGACTTCGCCGTTGCGGTAGCCAAGGAAATTTCCGTCCTGACCGGCA
AGCCCTTCGTTTCCGCCCCCAATAAATTCCACGCACTCGCCTCGCATGGC
CCGATGGCGTTGATGAGCGGGGCCTTGAAGGCTCTTGCGGGCGACCTCTT
CAAGATTGCCAACGACGTGCGTTTCCTCGCTTCGGGCCCAAGGTGTGGGC
TGGGTGAACTCAATTTACCGGAGAATGAGCCCGGCTCAAGCATCATGCCC
GGCAAGGTTAACCCGACGCAATGCGAAGCCTTGACGATGGTCTGTGTCCA
GGTAATGGGCAACGACGCCGCGATTGGATTTGCGTCAAGCCAGGGGGCGT
TTGAATTGAATGTTTTCAAGCCGGTGATTATCCATAACCTCTTGCAGTCC
TGTCGGCTGATGCATGACTCGGCCAGGTAGGGAGGGGGAGAGGAGGAAGG
CAGGGAGGCAGGGAGGGAGGGAGGCAGGGAGGGAGGGAGGGATTGGAAAG
ACATGTGAGGGGCGCACTGGATGTCGTCGTATATGCATTTATCCCATTAC
CCTCCCCCTCTTCCTCCTTCCCTCTCCCTCCCATTTTTTGTCTCAGGAAC
TTCCGAGAGTACGCGTTGGAAGGCCTAAGCGTGAATGAAGACAAGCTCAA
CAAGTATGTCCACGAGTCCCTTATGACGGTGACGGCTCTCAACCCCCACA
TCGGGTATGATAAGGCCGCGAAAATTGCCATGAAAGCCCACCATGAGAAA
TCGACACTGAGAGAAGCGGCTTTGGCGCTAGGCTACCTGACGGCGGAGGA
ATTTGATGAGTGGTTGCAACCGGAGAAAATGGTCTAAGAAGGGACGAAGG
TGAGGGACGGATGGATGGGGGGACGAGACGTTAGGGTGGGTTGTGTAGGT
ATCCCAGTGGGTGGAGACAGGGAAATAAGAGGTGGTACGTTTGGGGTGGT
TAGAGTCAGATGGTGAGGGTGAATAAGCGCGCGCATGACATAGTCACAAC
AAGAACAACAGCGTGAGATTACGAAGAAGGCTGTAAACACATGAAGAGGG
ACGACAAGTAGAAGCAGCGCTAGACATGTTAATATTCTCAA

Coding sequence (CDS) from alignment at chr6:988011..991201+

>NO06G03600.3 ID=NO06G03600.3|Name=NO06G03600.3|organism=Nannochloropsis oceanica|type=CDS|length=1296bp|location=Sequence derived from alignment at chr6:988011..991201+ (Nannochloropsis oceanica)
ATGGTCGCGCTCACCTGTAGTCTTCTACTCTCCCTCTTTCCCTCCTTACA
GGCCCTGGGTGTTATAAAAAAAGCAGCGGCGAAAACTAATGCTTCTCTCG
GTCTCCTCCCTCTTGATATTGCCCTCCTGATCGATAAAGCCGCAGATGAG
GTGATTGCTGGAAAGCTCGACGATCATTTCCCTTTGCGGATCTGGCAGAC
GGGCTCAGGGACCCAAAGTAACATGAATGCAAACGAAGTAATTTCCAATC
GGGCGATTGAGATGGCCGGGGGTAAGATGGGGAGTAAAGACCCGGTGCAT
TCCAATGACCACGTGAACAGGTCGCAGAGTAGCAACGACGTCTTCCCGAC
GGCTATGCATGTGGCGGCTGTGTTGTATATATCCGATTTCCTCCTACCGG
AGCTCGAGCGGTTGCACGCCGACTTGGAGGAGAAAGCAGGGAAGTGGAAG
GGGATCGTGAAAATTGGACGCACGCACTTGCAGGACGCCGTGCCCATGAC
CCTAGGACAGGAATTCGGCGGGTACGCGGCGGCTGTGGAAGTGGACATCA
AGGCCATCCGGCACGCCCTCCAAGATCTCTATTTCCTTGCTCAAGGCGGA
ACAGCCGTAGGCACGGGTCTTAACACCCACCCTGACTTCGCCGTTGCGGT
AGCCAAGGAAATTTCCGTCCTGACCGGCAAGCCCTTCGTTTCCGCCCCCA
ATAAATTCCACGCACTCGCCTCGCATGGCCCGATGGCGTTGATGAGCGGG
GCCTTGAAGGCTCTTGCGGGCGACCTCTTCAAGATTGCCAACGACGTGCG
TTTCCTCGCTTCGGGCCCAAGGTGTGGGCTGGGTGAACTCAATTTACCGG
AGAATGAGCCCGGCTCAAGCATCATGCCCGGCAAGGTTAACCCGACGCAA
TGCGAAGCCTTGACGATGGTCTGTGTCCAGGTAATGGGCAACGACGCCGC
GATTGGATTTGCGTCAAGCCAGGGGGCGTTTGAATTGAATGTTTTCAAGC
CGGTGATTATCCATAACCTCTTGCAGTCCTGTCGGCTGATGCATGACTCG
GCCAGGAACTTCCGAGAGTACGCGTTGGAAGGCCTAAGCGTGAATGAAGA
CAAGCTCAACAAGTATGTCCACGAGTCCCTTATGACGGTGACGGCTCTCA
ACCCCCACATCGGGTATGATAAGGCCGCGAAAATTGCCATGAAAGCCCAC
CATGAGAAATCGACACTGAGAGAAGCGGCTTTGGCGCTAGGCTACCTGAC
GGCGGAGGAATTTGATGAGTGGTTGCAACCGGAGAAAATGGTCTAA

Synonyms

Publications