NO06G03600.1, NO06G03600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03600.1
Unique NameNO06G03600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2384
Alignment locationchr6:988011..991201 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:988011..991201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G03600.1 vs.
Match: EWM26364.1 (fumarate hydratase [Nannochloropsis gaditana])

HSP 1 Score: 804.3 bits (2076), Expect = 2.300e-229
Identity = 416/544 (76.47%), Postives = 460/544 (84.56%), Query Frame = 0
Query:    1 MRWLPTPSFLLSTTSSALRFSSPSVLRRPSTLVQQQGLLALGFTRPFLFHLQHHHQQRHSLPELSQRLSPSLNIRAHSTTASTTTMATREEKDSMGLIQVPVDRYWGAQTQRSLKYFNIGHDTMPREVIQALGVIKKAAAKTNASLGLLPLDIALLIDKAADEVIAGKLDDHFPLRIWQTGSGTQSNMNANEVISNRAIEMAGGKMGSKDPVHSNDHVNRSQSSNDVFPTAMHVAAVLYISDFLLPELERLHADLEEKAGKWKGIVKIGRTHLQDAVPMTLGQEFGGYAAAVEVDIKAIRHALQDLYFLAQGGTAVGTGLNTHPDFAVAVAKEISVLTGKPFVSAPNKFHALASHGPMALMSGALKALAGDLFKIANDVRFLASGPRCGLGELNLPENEPGSSIMPGKVNPTQCEALTMVCVQVMGNDAAIGFASSQGAFELNVFKPVIIHNLLQSCRLMHDSARNFREYALEGLSVNEDKLNKYVHESLMTVTALNPHIGYDKAAKIAMKAHHEKSTLREAALALGYLTAEEFDEWLQPEKMV 545
            M W   PS LLST SSALR      LRR       QG L  G T P    L    + R S      R  P L + + ++  + +TMATR+E DSMG+IQVP D+YWGAQTQRSLKYFNIGH+TMPREVIQALG++KKAAAKTNA LGLL  DIA LID+AADEVI+G LD HFPLRIWQTGSGTQSNMNANEVISNRAIEMAGG MGSK PVH+NDHVNRSQSSNDVFPTAMHVAAVLY+SD LLP+L  L   LE+KA  ++G+VKIGRTHLQDAVPMTLGQEFGGYAAA+EVD++ I HALQ+LY LAQGGTAVGTGLNTHP FAV VA EI+ LTGKPFV+APNKF ALASHGP+ L+SGALKA A DLFKIANDVRFLASGPRCGLGELNLPENEPGSSIMPGKVNPTQCEA+TMVC QVMGNDAAIGFA+SQGAFELNVFKPVII NL+QSC L+HDSARNFREYALEGL+VN+D+++KYVHESLMTVTALNPHIGYDKAA+IA KAHHEKSTL+EAALALG LTAE++D W+QPEKMV
Sbjct:    1 MLWSSAPSRLLSTPSSALRPFPFFALRRHFA----QGFLVKGET-PHSSPLCPLGKHRRSHSSRLNRSYPLLRVHSITSFGAGSTMATRDETDSMGVIQVPADKYWGAQTQRSLKYFNIGHETMPREVIQALGIVKKAAAKTNAELGLLTPDIAALIDRAADEVISGALDAHFPLRIWQTGSGTQSNMNANEVISNRAIEMAGGTMGSKLPVHANDHVNRSQSSNDVFPTAMHVAAVLYVSDALLPQLRSLQGALEDKAQAFQGMVKIGRTHLQDAVPMTLGQEFGGYAAALEVDVQGIAHALQELYPLAQGGTAVGTGLNTHPKFAVTVAAEIARLTGKPFVTAPNKFQALASHGPVVLLSGALKAAAADLFKIANDVRFLASGPRCGLGELNLPENEPGSSIMPGKVNPTQCEAMTMVCAQVMGNDAAIGFAASQGAFELNVFKPVIIQNLMQSCHLLHDSARNFREYALEGLTVNQDRIDKYVHESLMTVTALNPHIGYDKAAQIAKKAHHEKSTLKEAALALGILTAEQYDAWVQPEKMV 539          
The following BLAST results are available for this feature:
BLAST of NO06G03600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26364.12.300e-22976.47fumarate hydratase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03600NO06G03600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03600.1NO06G03600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03600.1.cds1NO06G03600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03600.1.cds2NO06G03600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03600.1.cds3NO06G03600.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03600.1.cds4NO06G03600.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03600.1.cds5NO06G03600.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03600.1.cds6NO06G03600.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03600.1 ID=NO06G03600.1|Name=NO06G03600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2384bp
AGAAGAGCTATATTTTTAATCATTCAATTATTTTATGAGGGGATGGTGGT
TGGGTTTGGAATGTTGAAGGATGTGAAAGTAAAGTGTACCACTGTGAGGA
ATTGTGAACCAATTCCCATCCCTCGTCCCAAATCTCAAGATATACACTTA
TTTTTTGGGTCGTGGTTTGCGGCCCGAATCGTGACCCATATTGATTTTTC
GTCCCAATATTCCGCGACCCAAATCCCAAGATATACACTCCCTAATTAAA
TAATCCGGCGACGCTAGCGAGTTCGATTATCTAAGTCGAATCTGGTGGGG
ACGCTTGTGCATGTGGGCACAAGCATTCCTTTGTCATTGCTGGGGGCATG
GGGCTCTACAGGAGCCTTTCCAAAATACACAGAACAAATCCATCGATTAA
TCAACGCCTTCAACTCCCGCAACGCAGGCACTTGCACCATCAATACTGCC
TGCAAGGCGTGGTACATAACGTTTTTCAGCCTTCAGCACCACGACATGCG
TTGGTTGCCGACGCCATCCTTCTTGCTGTCCACTACCTCTTCCGCTTTAC
GCTTTTCTTCCCCTTCCGTCTTGCGACGCCCATCCACTCTCGTTCAACAA
CAGGGTCTGCTAGCACTTGGCTTCACCCGTCCCTTCTTGTTTCACCTCCA
GCACCACCACCAGCAGCGGCACTCTTTACCGGAGCTCTCGCAACGTTTGT
CCCCTTCCTTAAATATCCGCGCACATTCGACCACCGCGTCCACCACGACC
ATGGCCACTCGCGAGGAAAAGGACAGCATGGGCCTTATCCAGGTCCCAGT
CGACCGCTATTGGGGTGCACAGACGCAGCGTTCCCTCAAGTACTTCAACA
TTGGGCATGATACCATGCCCCGAGAAGTCATCCAGGCCCTGGGTGTTATA
AAAAAAGCAGCGGCGAAAACTAATGCTTCTCTCGGTCTCCTCCCTCTTGA
TATTGCCCTCCTGATCGATAAAGCCGCAGATGAGGTGATTGCTGGAAAGC
TCGACGATCATTTCCCTTTGCGGATCTGGCAGACGGGCTCAGGGACCCAA
AGTAACATGAATGCAAACGAAGTAATTTCCAATCGGGCGATTGAGATGGC
CGGGGGTAAGATGGGGAGTAAAGACCCGGTGCATTCCAATGACCACGTGA
ACAGGTCGCAGAGTAGCAACGACGTCTTCCCGACGGCTATGCATGTGGCG
GCTGTGTTGTATATATCCGATTTCCTCCTACCGGAGCTCGAGCGGTTGCA
CGCCGACTTGGAGGAGAAAGCAGGGAAGTGGAAGGGGATCGTGAAAATTG
GACGCACGCACTTGCAGGACGCCGTGCCCATGACCCTAGGACAGGAATTC
GGCGGGTACGCGGCGGCTGTGGAAGTGGACATCAAGGCCATCCGGCACGC
CCTCCAAGATCTCTATTTCCTTGCTCAAGGCGGAACAGCCGTAGGCACGG
GTCTTAACACCCACCCTGACTTCGCCGTTGCGGTAGCCAAGGAAATTTCC
GTCCTGACCGGCAAGCCCTTCGTTTCCGCCCCCAATAAATTCCACGCACT
CGCCTCGCATGGCCCGATGGCGTTGATGAGCGGGGCCTTGAAGGCTCTTG
CGGGCGACCTCTTCAAGATTGCCAACGACGTGCGTTTCCTCGCTTCGGGC
CCAAGGTGTGGGCTGGGTGAACTCAATTTACCGGAGAATGAGCCCGGCTC
AAGCATCATGCCCGGCAAGGTTAACCCGACGCAATGCGAAGCCTTGACGA
TGGTCTGTGTCCAGGTAATGGGCAACGACGCCGCGATTGGATTTGCGTCA
AGCCAGGGGGCGTTTGAATTGAATGTTTTCAAGCCGGTGATTATCCATAA
CCTCTTGCAGTCCTGTCGGCTGATGCATGACTCGGCCAGGAACTTCCGAG
AGTACGCGTTGGAAGGCCTAAGCGTGAATGAAGACAAGCTCAACAAGTAT
GTCCACGAGTCCCTTATGACGGTGACGGCTCTCAACCCCCACATCGGGTA
TGATAAGGCCGCGAAAATTGCCATGAAAGCCCACCATGAGAAATCGACAC
TGAGAGAAGCGGCTTTGGCGCTAGGCTACCTGACGGCGGAGGAATTTGAT
GAGTGGTTGCAACCGGAGAAAATGGTCTAAGAAGGGACGAAGGTGAGGGA
CGGATGGATGGGGGGACGAGACGTTAGGGTGGGTTGTGTAGGTATCCCAG
TGGGTGGAGACAGGGAAATAAGAGGTGGTACGTTTGGGGTGGTTAGAGTC
AGATGGTGAGGGTGAATAAGCGCGCGCATGACATAGTCACAACAAGAACA
ACAGCGTGAGATTACGAAGAAGGCTGTAAACACATGAAGAGGGACGACAA
GTAGAAGCAGCGCTAGACATGTTAATATTCTCAA
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protein sequence of NO06G03600.1

>NO06G03600.1-protein ID=NO06G03600.1-protein|Name=NO06G03600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=545bp
MRWLPTPSFLLSTTSSALRFSSPSVLRRPSTLVQQQGLLALGFTRPFLFH
LQHHHQQRHSLPELSQRLSPSLNIRAHSTTASTTTMATREEKDSMGLIQV
PVDRYWGAQTQRSLKYFNIGHDTMPREVIQALGVIKKAAAKTNASLGLLP
LDIALLIDKAADEVIAGKLDDHFPLRIWQTGSGTQSNMNANEVISNRAIE
MAGGKMGSKDPVHSNDHVNRSQSSNDVFPTAMHVAAVLYISDFLLPELER
LHADLEEKAGKWKGIVKIGRTHLQDAVPMTLGQEFGGYAAAVEVDIKAIR
HALQDLYFLAQGGTAVGTGLNTHPDFAVAVAKEISVLTGKPFVSAPNKFH
ALASHGPMALMSGALKALAGDLFKIANDVRFLASGPRCGLGELNLPENEP
GSSIMPGKVNPTQCEALTMVCVQVMGNDAAIGFASSQGAFELNVFKPVII
HNLLQSCRLMHDSARNFREYALEGLSVNEDKLNKYVHESLMTVTALNPHI
GYDKAAKIAMKAHHEKSTLREAALALGYLTAEEFDEWLQPEKMV*
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mRNA from alignment at chr6:988011..991201+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03600.1 ID=NO06G03600.1|Name=NO06G03600.1|organism=Nannochloropsis oceanica|type=mRNA|length=3191bp|location=Sequence derived from alignment at chr6:988011..991201+ (Nannochloropsis oceanica)
AGAAGAGCTATATTTTTAATCATTCAATTATTTTATGAGGGGATGGTGGT TGGGTTTGGAATGTTGAAGGATGTGAAAGTAAAGTGTACCACTGTGAGGA ATTGTGAACCAATTCCCATCCCTCGTCCCAAATCTCAAGATATACACTTA TTTTTTGGGTCGTGGTTTGCGGCCCGAATCGTGACCCATATTGATTTTTC GTCCCAATATTCCGCGACCCAAATCCCAAGATATACACTCCCTAATTAAA TAATCCGGCGACGCTAGCGAGTTCGATTATCTAAGTCGAATCTGGTGGGG ACGCTTGTGCATGTGGGCACAAGCATTCCTTTGTCATTGCTGGGGGCATG GGGCTCTACAGGAGCCTTTCCAAAATACACAGAACAAATCCATCGATTAA TCAACGCCTTCAACTCCCGCAACGCAGGCACTTGCACCATCAATACTGCC TGCAAGGCGTGGTACATAACGTTTTTCAGCCTTCAGCACCACGACATGCG TTGGTTGCCGACGCCATCCTTCTTGCTGTCCACTACCTCTTCCGCTTTAC GCTTTTCTTCCCCTTCCGTCTTGCGACGCCCATCCACTCTCGTTCAACAA CAGGGTCTGCTAGCACTTGGCTTCACCCGTCCCTTCTTGTTTCACCTCCA GCACCACCACCAGCAGCGGCACTCTTTACCGGAGCTCTCGCAACGTTTGT CCCCTTCCTTAAATATCCGCGCACATTCGACCACCGCGTCCACCACGACC ATGGCCACTCGCGAGGAAAAGGACAGGTACGTGCGCACACTTTTCTGGAC AGAGGACGAAAAGGCATCTTCTTCCTTCGGCCGCCCTCTTGTCGGTAGCT CGGCCACATCTTGCTTATGTAAATATGGGAATGTGCATAGCACAAGCTGG GTATTGTGCTTGGTCATATCGCGGCACTTATGGTCTTATCAGATGCATCC TCAATCTACCCCACTCCCTACTCTCCCACATCTCTCATATCACTCAGCAT GGGCCTTATCCAGGTCCCAGTCGACCGCTATTGGGGTGCACAGACGCAGC GTTCCCTCAAGTACTTCAACATTGGGCATGATACCATGCCCCGAGAAGTC ATCCAGGTGAGGAGTCTCCATGAGACACTCCCTCCGTCCGTCCCTCCCTC CCTCTCTCCACAGTGTTGAACAGCTTATATCCTGTGAAATCGTATAAAAT TCGCATTGTTTTCTATTGACAAATAGCTGTGATGGTCGCGCTCACCTGTA GTCTTCTACTCTCCCTCTTTCCCTCCTTACAGGCCCTGGGTGTTATAAAA AAAGCAGCGGCGAAAACTAATGCTTCTCTCGGTCTCCTCCCTCTTGATAT TGCCCTCCTGATCGATAAAGCCGCAGATGAGGTGATTGCTGGAAAGCTCG ACGATCATTTCCCTTTGCGGATCTGGCAGACGGGCTCAGGGACCCAAAGT AACATGAATGCAAACGAAGTAATTTCCAATCGGGCGATTGAGATGGCCGG GGGTAAGATGGGGAGTAAAGACCCGGTGCATTCCAATGACCACGTGAACA GGTCGCAGAGTAGCAACGACGTCTTCCCGACGGCTATGCATGTGGCGGCT GTGTTGTATATATCCGATTTCCTCCTACCGGAGCTCGAGCGGTTGCACGC CGACTTGGAGGAGAAAGTGAGCAAAGAGGAGAGGGAGGGAGGGAAAGGCT GTACAAGAGTGATTGAGGGTAGCTTTCACTGATCAAGTCTAGAAAGGAAG GGTTCCGTTCGCTCACATAGACCTATACCACGTGCATTAATAAGGCAGGG AAGTGGAAGGGGATCGTGAAAATTGGACGCACGCACTTGCAGGACGCCGT GCCCATGACCCTAGGACAGGAATTCGGCGGGTACGCGGCGGCTGTGGAAG GTAATATTGACATTTTGCGGAGATTCTTCGAGTCGTGGGCTCATACGTCT TCCTTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC CCCTCCGCTCAGTGGACATCAAGGCCATCCGGCACGCCCTCCAAGATCTC TATTTCCTTGCTCAAGGCGGAACAGCCGTAGGCACGGGTCTTAACACCCA CCCTGACTTCGCCGTTGCGGTAGCCAAGGAAATTTCCGTCCTGACCGGCA AGCCCTTCGTTTCCGCCCCCAATAAATTCCACGCACTCGCCTCGCATGGC CCGATGGCGTTGATGAGCGGGGCCTTGAAGGCTCTTGCGGGCGACCTCTT CAAGATTGCCAACGACGTGCGTTTCCTCGCTTCGGGCCCAAGGTGTGGGC TGGGTGAACTCAATTTACCGGAGAATGAGCCCGGCTCAAGCATCATGCCC GGCAAGGTTAACCCGACGCAATGCGAAGCCTTGACGATGGTCTGTGTCCA GGTAATGGGCAACGACGCCGCGATTGGATTTGCGTCAAGCCAGGGGGCGT TTGAATTGAATGTTTTCAAGCCGGTGATTATCCATAACCTCTTGCAGTCC TGTCGGCTGATGCATGACTCGGCCAGGTAGGGAGGGGGAGAGGAGGAAGG CAGGGAGGCAGGGAGGGAGGGAGGCAGGGAGGGAGGGAGGGATTGGAAAG ACATGTGAGGGGCGCACTGGATGTCGTCGTATATGCATTTATCCCATTAC CCTCCCCCTCTTCCTCCTTCCCTCTCCCTCCCATTTTTTGTCTCAGGAAC TTCCGAGAGTACGCGTTGGAAGGCCTAAGCGTGAATGAAGACAAGCTCAA CAAGTATGTCCACGAGTCCCTTATGACGGTGACGGCTCTCAACCCCCACA TCGGGTATGATAAGGCCGCGAAAATTGCCATGAAAGCCCACCATGAGAAA TCGACACTGAGAGAAGCGGCTTTGGCGCTAGGCTACCTGACGGCGGAGGA ATTTGATGAGTGGTTGCAACCGGAGAAAATGGTCTAAGAAGGGACGAAGG TGAGGGACGGATGGATGGGGGGACGAGACGTTAGGGTGGGTTGTGTAGGT ATCCCAGTGGGTGGAGACAGGGAAATAAGAGGTGGTACGTTTGGGGTGGT TAGAGTCAGATGGTGAGGGTGAATAAGCGCGCGCATGACATAGTCACAAC AAGAACAACAGCGTGAGATTACGAAGAAGGCTGTAAACACATGAAGAGGG ACGACAAGTAGAAGCAGCGCTAGACATGTTAATATTCTCAA
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Coding sequence (CDS) from alignment at chr6:988011..991201+

>NO06G03600.1 ID=NO06G03600.1|Name=NO06G03600.1|organism=Nannochloropsis oceanica|type=CDS|length=1635bp|location=Sequence derived from alignment at chr6:988011..991201+ (Nannochloropsis oceanica)
ATGCGTTGGTTGCCGACGCCATCCTTCTTGCTGTCCACTACCTCTTCCGC
TTTACGCTTTTCTTCCCCTTCCGTCTTGCGACGCCCATCCACTCTCGTTC
AACAACAGGGTCTGCTAGCACTTGGCTTCACCCGTCCCTTCTTGTTTCAC
CTCCAGCACCACCACCAGCAGCGGCACTCTTTACCGGAGCTCTCGCAACG
TTTGTCCCCTTCCTTAAATATCCGCGCACATTCGACCACCGCGTCCACCA
CGACCATGGCCACTCGCGAGGAAAAGGACAGCATGGGCCTTATCCAGGTC
CCAGTCGACCGCTATTGGGGTGCACAGACGCAGCGTTCCCTCAAGTACTT
CAACATTGGGCATGATACCATGCCCCGAGAAGTCATCCAGGCCCTGGGTG
TTATAAAAAAAGCAGCGGCGAAAACTAATGCTTCTCTCGGTCTCCTCCCT
CTTGATATTGCCCTCCTGATCGATAAAGCCGCAGATGAGGTGATTGCTGG
AAAGCTCGACGATCATTTCCCTTTGCGGATCTGGCAGACGGGCTCAGGGA
CCCAAAGTAACATGAATGCAAACGAAGTAATTTCCAATCGGGCGATTGAG
ATGGCCGGGGGTAAGATGGGGAGTAAAGACCCGGTGCATTCCAATGACCA
CGTGAACAGGTCGCAGAGTAGCAACGACGTCTTCCCGACGGCTATGCATG
TGGCGGCTGTGTTGTATATATCCGATTTCCTCCTACCGGAGCTCGAGCGG
TTGCACGCCGACTTGGAGGAGAAAGCAGGGAAGTGGAAGGGGATCGTGAA
AATTGGACGCACGCACTTGCAGGACGCCGTGCCCATGACCCTAGGACAGG
AATTCGGCGGGTACGCGGCGGCTGTGGAAGTGGACATCAAGGCCATCCGG
CACGCCCTCCAAGATCTCTATTTCCTTGCTCAAGGCGGAACAGCCGTAGG
CACGGGTCTTAACACCCACCCTGACTTCGCCGTTGCGGTAGCCAAGGAAA
TTTCCGTCCTGACCGGCAAGCCCTTCGTTTCCGCCCCCAATAAATTCCAC
GCACTCGCCTCGCATGGCCCGATGGCGTTGATGAGCGGGGCCTTGAAGGC
TCTTGCGGGCGACCTCTTCAAGATTGCCAACGACGTGCGTTTCCTCGCTT
CGGGCCCAAGGTGTGGGCTGGGTGAACTCAATTTACCGGAGAATGAGCCC
GGCTCAAGCATCATGCCCGGCAAGGTTAACCCGACGCAATGCGAAGCCTT
GACGATGGTCTGTGTCCAGGTAATGGGCAACGACGCCGCGATTGGATTTG
CGTCAAGCCAGGGGGCGTTTGAATTGAATGTTTTCAAGCCGGTGATTATC
CATAACCTCTTGCAGTCCTGTCGGCTGATGCATGACTCGGCCAGGAACTT
CCGAGAGTACGCGTTGGAAGGCCTAAGCGTGAATGAAGACAAGCTCAACA
AGTATGTCCACGAGTCCCTTATGACGGTGACGGCTCTCAACCCCCACATC
GGGTATGATAAGGCCGCGAAAATTGCCATGAAAGCCCACCATGAGAAATC
GACACTGAGAGAAGCGGCTTTGGCGCTAGGCTACCTGACGGCGGAGGAAT
TTGATGAGTGGTTGCAACCGGAGAAAATGGTCTAA
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Synonyms
Publications