NO06G03540.1, NO06G03540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03540.1
Unique NameNO06G03540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length531
Alignment locationchr6:974550..975346 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:974550..975346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO06G03540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03540NO06G03540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03540.1NO06G03540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03540.1.cds1NO06G03540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03540.1.cds2NO06G03540.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03540.1 ID=NO06G03540.1|Name=NO06G03540.1|organism=Nannochloropsis oceanica|type=mRNA|length=531bp
ATGAGTGAGAGCACACTTAGGGCCACCAGCATCAGCAGGAATGGCTCTAC
CACCCGGCAAAACGACGCAGGACAACCAGCCCAAGCCCAACTGCCTGCCC
CATCCTGCTTTACGGATACGACAACCACTACCCCCAGCAGCAGCAACAGC
AGTAACGCCACAATTCCCTCCCCCGCCATCATGGACGTACATCCAACTAA
AAATCGTGCGCAACTTCGGACAGAGAACGAGGACTACATGAGACGGCATC
CCGAGGTGAAAAGCATCATGAGACTTTATATGTCAGAAGTCCTTAAAAGT
CGGCCTGTTGATGAAGTGGGTCCGTGGAGCTCCGCATTCTTCACACAGCC
TACACTCCGAGAAAAGGTTGAGGAGGAGCAACAGCGGCAGCAGCAGCAAT
CTACAGTACCAGGAATACCGTCTACTTTGCTGTCTTCCACAAAACCGATG
ACAACAATTCCTCAATCGCCGCCCTCTTCCTTTTCCTCGCCCTCTTCGTC
AATATCGCCACAGCCACAACCACACGCATAG
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protein sequence of NO06G03540.1

>NO06G03540.1-protein ID=NO06G03540.1-protein|Name=NO06G03540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MSESTLRATSISRNGSTTRQNDAGQPAQAQLPAPSCFTDTTTTTPSSSNS
SNATIPSPAIMDVHPTKNRAQLRTENEDYMRRHPEVKSIMRLYMSEVLKS
RPVDEVGPWSSAFFTQPTLREKVEEEQQRQQQQSTVPGIPSTLLSSTKPM
TTIPQSPPSSFSSPSSSISPQPQPHA*
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mRNA from alignment at chr6:974550..975346+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03540.1 ID=NO06G03540.1|Name=NO06G03540.1|organism=Nannochloropsis oceanica|type=mRNA|length=797bp|location=Sequence derived from alignment at chr6:974550..975346+ (Nannochloropsis oceanica)
ATGAGTGAGAGCACACTTAGGGCCACCAGCATCAGCAGGAATGGCTCTAC
CACCCGGCAAAACGACGCAGGACAACCAGCCCAAGCCCAACTGCCTGCCC
CATCCTGCTTTACGGATACGACAACCACTACCCCCAGCAGCAGCAACAGC
AGTAACGCCACAATTCCCTCCCCCGCCATCATGGACGTACATCCAACTAA
AAATCGTGCGCAACTTCGGACAGAGAACGAGGACTACATGAGACGGCATC
CCGAGGTGAAAAGCATCATGAGACTTTATATGTCAGAAGGTACGTTTATG
CCGGTAGATTAGTGTAGAAGTCTCGTGCTCTGGAGGGACACACCTCCACT
CACTCCAATTGCTCGAAGAGAACAATTATGACAAAGCACCTGTGGCAAGT
GTACGCTCCTCCCTCCTCCTGAAACGTCAGCGGGTGCGAAAGCAACTTTT
GTACATGATCTCATAAGTTTTCCCATACCTCTTTCCTTTCGTTTAAAAAC
CACATTTGTTACTGTTCGATACATGTTAATTGTCATTCTCGTAACATCAT
TACAGTCCTTAAAAGTCGGCCTGTTGATGAAGTGGGTCCGTGGAGCTCCG
CATTCTTCACACAGCCTACACTCCGAGAAAAGGTTGAGGAGGAGCAACAG
CGGCAGCAGCAGCAATCTACAGTACCAGGAATACCGTCTACTTTGCTGTC
TTCCACAAAACCGATGACAACAATTCCTCAATCGCCGCCCTCTTCCTTTT
CCTCGCCCTCTTCGTCAATATCGCCACAGCCACAACCACACGCATAG
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Coding sequence (CDS) from alignment at chr6:974550..975346+

>NO06G03540.1 ID=NO06G03540.1|Name=NO06G03540.1|organism=Nannochloropsis oceanica|type=CDS|length=531bp|location=Sequence derived from alignment at chr6:974550..975346+ (Nannochloropsis oceanica)
ATGAGTGAGAGCACACTTAGGGCCACCAGCATCAGCAGGAATGGCTCTAC
CACCCGGCAAAACGACGCAGGACAACCAGCCCAAGCCCAACTGCCTGCCC
CATCCTGCTTTACGGATACGACAACCACTACCCCCAGCAGCAGCAACAGC
AGTAACGCCACAATTCCCTCCCCCGCCATCATGGACGTACATCCAACTAA
AAATCGTGCGCAACTTCGGACAGAGAACGAGGACTACATGAGACGGCATC
CCGAGGTGAAAAGCATCATGAGACTTTATATGTCAGAAGTCCTTAAAAGT
CGGCCTGTTGATGAAGTGGGTCCGTGGAGCTCCGCATTCTTCACACAGCC
TACACTCCGAGAAAAGGTTGAGGAGGAGCAACAGCGGCAGCAGCAGCAAT
CTACAGTACCAGGAATACCGTCTACTTTGCTGTCTTCCACAAAACCGATG
ACAACAATTCCTCAATCGCCGCCCTCTTCCTTTTCCTCGCCCTCTTCGTC
AATATCGCCACAGCCACAACCACACGCATAG
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Synonyms
Publications