NO06G03200.1, NO06G03200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03200.1
Unique NameNO06G03200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length756
Alignment locationchr6:898714..899694 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:898714..899694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G03200.1 vs.
Match: EWM20226.1 (hypothetical protein Naga_100681g5 [Nannochloropsis gaditana])

HSP 1 Score: 141.0 bits (354), Expect = 5.200e-30
Identity = 106/245 (43.27%), Postives = 137/245 (55.92%), Query Frame = 0 
Query:    1 MLWSSATKAGAMMWRGVVASRSGKGCVLRGAFSSATDTGARTSSRGESGKPLK---GDYQPIGVVAAVAGSTAYGVHHLDQMEIKRIESESKSEVARIQEKAATEVARIEGDCARIQGESKSEVARIQEKAATEVARIQEKATMEVACIQEKAATEIARIESDRARIQDKAATEIASIESDRARIQDKAATEIARIESDRKLSELFWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNG 243
            ML S ATKAGAM WR    S  GKG  LRGA  S T TG  T S G S   +K        +G+VAAVAGSTA  VHHLDQ EIK           RIQ+KA  +VAR            ++E+ RIQ+KAATE+ RI +KA  E+A    +A  ++AR+E +R                          +E+AR+E +R+LSE   +AEVERYK+DL+L  T+D++PYQAA+ + + K RGG G
Sbjct:   24 MLCSLATKAGAMAWRRGAQSGRGKGRRLRGASLSTTHTGTGTGSEGGSVTTIKIVTVTVAVLGLVAAVAGSTAVAVHHLDQTEIK-----------RIQDKATADVAR-----------DQTEIKRIQDKAATEIKRIHDKAATEIA----QAKADVARVEGER-------------------------KSEVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAIRENQIK-RGGAG 216
The following BLAST results are available for this feature:
BLAST of NO06G03200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20226.15.200e-3043.27hypothetical protein Naga_100681g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03200NO06G03200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03200.1NO06G03200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03200.1.cds1NO06G03200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03200.1.cds2NO06G03200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03200.1 ID=NO06G03200.1|Name=NO06G03200.1|organism=Nannochloropsis oceanica|type=mRNA|length=756bp
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGATGTGGAGAGGGGT
TGTGGCTTCGCGTTCAGGGAAGGGATGCGTACTGCGAGGGGCATTCTCAT
CGGCTACCGACACGGGGGCACGCACGAGCAGTAGAGGGGAGTCTGGAAAG
CCCTTGAAGGGAGATTACCAGCCCATTGGTGTGGTGGCCGCGGTTGCGGG
CTCTACCGCTTACGGCGTCCACCATCTTGACCAGATGGAGATAAAGCGCA
TCGAGAGTGAGAGCAAGTCGGAGGTTGCTCGTATCCAGGAGAAGGCGGCG
ACGGAGGTTGCTCGTATTGAGGGCGACTGTGCGCGAATCCAGGGTGAGAG
CAAGTCGGAGGTTGCTCGTATCCAGGAGAAGGCGGCGACGGAGGTTGCTC
GTATCCAGGAGAAGGCGACGATGGAGGTTGCTTGTATCCAGGAGAAGGCG
GCGACGGAGATTGCTCGTATCGAAAGCGACCGAGCGCGTATCCAGGACAA
GGCGGCGACGGAGATTGCTAGTATCGAAAGCGACCGAGCGCGTATCCAGG
ACAAGGCGGCGACGGAGATTGCTCGTATCGAAAGCGACCGAAAGTTGTCA
GAGCTTTTCTGGAAGGCCGAGGTAGAGCGGTACAAGCACGACCTCCAACT
TGCGCACACGGAAGACTATGAGCCCTATCAGGCGGCAGTTTCGAAGACAA
GAAATAAAACAAGGGGAGGAAACGGAGTATCCGAGGAGGATGAGAAGAAG
GGCTAG
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protein sequence of NO06G03200.1

>NO06G03200.1-protein ID=NO06G03200.1-protein|Name=NO06G03200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp
MLWSSATKAGAMMWRGVVASRSGKGCVLRGAFSSATDTGARTSSRGESGK
PLKGDYQPIGVVAAVAGSTAYGVHHLDQMEIKRIESESKSEVARIQEKAA
TEVARIEGDCARIQGESKSEVARIQEKAATEVARIQEKATMEVACIQEKA
ATEIARIESDRARIQDKAATEIASIESDRARIQDKAATEIARIESDRKLS
ELFWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEKK
G*
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mRNA from alignment at chr6:898714..899694+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03200.1 ID=NO06G03200.1|Name=NO06G03200.1|organism=Nannochloropsis oceanica|type=mRNA|length=981bp|location=Sequence derived from alignment at chr6:898714..899694+ (Nannochloropsis oceanica)
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGATGTGGAGAGGGGT
TGTGGCTTCGCGTTCAGGTAAGGTGGCATATTGTAATGCATTTTGGAAGG
AGGGCTTGGTGGCTATTGGTAAGGGGTGGGGGTGGGGGGAGGGACGTTTG
GTGCACGCGACCGCATACTGCCCGAGGGATGTTGGTTCGTTTTTATCTGC
ACGTCTATCTCGTTTGAGGTGCAATCTGTGTTGTGCGGACAAGGGCCGGT
GCCAAGGTGCTCATGCACGAGCACATTCATACACGCCGACAGGGAAGGGA
TGCGTACTGCGAGGGGCATTCTCATCGGCTACCGACACGGGGGCACGCAC
GAGCAGTAGAGGGGAGTCTGGAAAGCCCTTGAAGGGAGATTACCAGCCCA
TTGGTGTGGTGGCCGCGGTTGCGGGCTCTACCGCTTACGGCGTCCACCAT
CTTGACCAGATGGAGATAAAGCGCATCGAGAGTGAGAGCAAGTCGGAGGT
TGCTCGTATCCAGGAGAAGGCGGCGACGGAGGTTGCTCGTATTGAGGGCG
ACTGTGCGCGAATCCAGGGTGAGAGCAAGTCGGAGGTTGCTCGTATCCAG
GAGAAGGCGGCGACGGAGGTTGCTCGTATCCAGGAGAAGGCGACGATGGA
GGTTGCTTGTATCCAGGAGAAGGCGGCGACGGAGATTGCTCGTATCGAAA
GCGACCGAGCGCGTATCCAGGACAAGGCGGCGACGGAGATTGCTAGTATC
GAAAGCGACCGAGCGCGTATCCAGGACAAGGCGGCGACGGAGATTGCTCG
TATCGAAAGCGACCGAAAGTTGTCAGAGCTTTTCTGGAAGGCCGAGGTAG
AGCGGTACAAGCACGACCTCCAACTTGCGCACACGGAAGACTATGAGCCC
TATCAGGCGGCAGTTTCGAAGACAAGAAATAAAACAAGGGGAGGAAACGG
AGTATCCGAGGAGGATGAGAAGAAGGGCTAG
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Coding sequence (CDS) from alignment at chr6:898714..899694+

>NO06G03200.1 ID=NO06G03200.1|Name=NO06G03200.1|organism=Nannochloropsis oceanica|type=CDS|length=756bp|location=Sequence derived from alignment at chr6:898714..899694+ (Nannochloropsis oceanica)
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGATGTGGAGAGGGGT
TGTGGCTTCGCGTTCAGGGAAGGGATGCGTACTGCGAGGGGCATTCTCAT
CGGCTACCGACACGGGGGCACGCACGAGCAGTAGAGGGGAGTCTGGAAAG
CCCTTGAAGGGAGATTACCAGCCCATTGGTGTGGTGGCCGCGGTTGCGGG
CTCTACCGCTTACGGCGTCCACCATCTTGACCAGATGGAGATAAAGCGCA
TCGAGAGTGAGAGCAAGTCGGAGGTTGCTCGTATCCAGGAGAAGGCGGCG
ACGGAGGTTGCTCGTATTGAGGGCGACTGTGCGCGAATCCAGGGTGAGAG
CAAGTCGGAGGTTGCTCGTATCCAGGAGAAGGCGGCGACGGAGGTTGCTC
GTATCCAGGAGAAGGCGACGATGGAGGTTGCTTGTATCCAGGAGAAGGCG
GCGACGGAGATTGCTCGTATCGAAAGCGACCGAGCGCGTATCCAGGACAA
GGCGGCGACGGAGATTGCTAGTATCGAAAGCGACCGAGCGCGTATCCAGG
ACAAGGCGGCGACGGAGATTGCTCGTATCGAAAGCGACCGAAAGTTGTCA
GAGCTTTTCTGGAAGGCCGAGGTAGAGCGGTACAAGCACGACCTCCAACT
TGCGCACACGGAAGACTATGAGCCCTATCAGGCGGCAGTTTCGAAGACAA
GAAATAAAACAAGGGGAGGAAACGGAGTATCCGAGGAGGATGAGAAGAAG
GGCTAG
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Synonyms
Publications