NO06G03140.1, NO06G03140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03140.1
Unique NameNO06G03140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length600
Alignment locationchr6:887885..888663 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:887885..888663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO06G03140.1 vs.
Match: EWM20060.1 (hypothetical protein Naga_101993g1 [Nannochloropsis gaditana])

HSP 1 Score: 148.7 bits (374), Expect = 2.000e-32
Identity = 96/202 (47.52%), Postives = 123/202 (60.89%), Query Frame = 0 
Query:    1 MLWSSATKAGAMVWRGVVASRSGKVAYCNAFWKEGLVAIGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQME----IKRIESESKSEVARIQEKAATEVARIEGDCARIQGESKSEIARIESDRKLSELFWKAEVERYKHDLHLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEKK 199
            ML     KAGAM  RG                   L   GKGRVLRG FSS   TG  TSS  E GK     +Q IG V  VAG+TA  V   DQ E    IK IES++ +E+AR+++KAA E+A+ + D AR++ ++ +EIAR+E  R +SE+FWKAEVER+K ++ LA T+DYEPYQAA+   R KTRGG   SEE E++
Sbjct:   79 MLRRFTAKAGAMARRGST-----------------LPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYIESKAAAEIARVEDKAAAEIAQAKADVARVEDKAAAEIARVEDKRTMSEMFWKAEVERFKREVQLAFTQDYEPYQAALVDKR-KTRGGTSGSEEKEEE 262
The following BLAST results are available for this feature:
BLAST of NO06G03140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20060.12.000e-3247.52hypothetical protein Naga_101993g1 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03140NO06G03140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03140.1NO06G03140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03140.1.cds1NO06G03140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03140.1.cds2NO06G03140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03140.1 ID=NO06G03140.1|Name=NO06G03140.1|organism=Nannochloropsis oceanica|type=mRNA|length=600bp
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGGTGTGGAGAGGGGT
TGTGGCTTCGCGTTCAGGTAAGGTGGCATATTGTAATGCATTTTGGAAGG
AGGGCTTGGTGGCTATTGGGAAGGGACGCGTACTGCGAGGGGCGTTCTCC
TCGGCTACCGACACGGGGGCGCGCACGAGCAGTAGAGGGGAGTCTGGAAA
GCCCTTGAAGGGAGATTACCAGCCCATTGGTGTGGTGGCTGCGGTTGCGG
GCTCTACCGCTTACGGCGTCCACCATCTTGACCAGATGGAGATAAAGCGC
ATCGAGAGTGAGAGCAAGTCGGAGGTTGCTCGTATCCAGGAGAAGGCGGC
GACGGAGGTTGCTCGTATTGAGGGCGACTGTGCGCGAATCCAGGGTGAGA
GCAAGTCGGAGATTGCTCGTATCGAAAGCGACCGAAAGTTGTCAGAGCTT
TTCTGGAAGGCCGAGGTAGAGCGGTACAAGCACGACCTCCACCTTGCGCA
CACGGAAGACTATGAGCCCTATCAGGCGGCAGTTTCGAAGACAAGAAATA
AAACAAGGGGAGGAAACGGAGTATCCGAGGAGGATGAGAAGAAGGGCTAG
back to top

protein sequence of NO06G03140.1

>NO06G03140.1-protein ID=NO06G03140.1-protein|Name=NO06G03140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MLWSSATKAGAMVWRGVVASRSGKVAYCNAFWKEGLVAIGKGRVLRGAFS
SATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQMEIKR
IESESKSEVARIQEKAATEVARIEGDCARIQGESKSEIARIESDRKLSEL
FWKAEVERYKHDLHLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEKKG*
back to top

mRNA from alignment at chr6:887885..888663+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03140.1 ID=NO06G03140.1|Name=NO06G03140.1|organism=Nannochloropsis oceanica|type=mRNA|length=779bp|location=Sequence derived from alignment at chr6:887885..888663+ (Nannochloropsis oceanica)
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGGTGTGGAGAGGGGT
TGTGGCTTCGCGTTCAGGTAAGGTGGCATATTGTAATGCATTTTGGAAGG
AGGGCTTGGTGGCTATTGGTAAGGGGTGTTGGGAGGGGGGGGGGGGGAAC
GTTTGGTGCATGCGACCGCATACTGCCCGAGGGATGTTGGTTCGTTTTTA
TCTGCACGTCTATCTCGTTTGAGGTGCAATCTGTGTTGTGCGGACAAGGG
CCGGTGCCAAGGTGCTCATGCACGAGCGCATTCATACACGCCGACAGGGA
AGGGACGCGTACTGCGAGGGGCGTTCTCCTCGGCTACCGACACGGGGGCG
CGCACGAGCAGTAGAGGGGAGTCTGGAAAGCCCTTGAAGGGAGATTACCA
GCCCATTGGTGTGGTGGCTGCGGTTGCGGGCTCTACCGCTTACGGCGTCC
ACCATCTTGACCAGATGGAGATAAAGCGCATCGAGAGTGAGAGCAAGTCG
GAGGTTGCTCGTATCCAGGAGAAGGCGGCGACGGAGGTTGCTCGTATTGA
GGGCGACTGTGCGCGAATCCAGGGTGAGAGCAAGTCGGAGATTGCTCGTA
TCGAAAGCGACCGAAAGTTGTCAGAGCTTTTCTGGAAGGCCGAGGTAGAG
CGGTACAAGCACGACCTCCACCTTGCGCACACGGAAGACTATGAGCCCTA
TCAGGCGGCAGTTTCGAAGACAAGAAATAAAACAAGGGGAGGAAACGGAG
TATCCGAGGAGGATGAGAAGAAGGGCTAG
back to top

Coding sequence (CDS) from alignment at chr6:887885..888663+

>NO06G03140.1 ID=NO06G03140.1|Name=NO06G03140.1|organism=Nannochloropsis oceanica|type=CDS|length=600bp|location=Sequence derived from alignment at chr6:887885..888663+ (Nannochloropsis oceanica)
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGGTGTGGAGAGGGGT
TGTGGCTTCGCGTTCAGGTAAGGTGGCATATTGTAATGCATTTTGGAAGG
AGGGCTTGGTGGCTATTGGGAAGGGACGCGTACTGCGAGGGGCGTTCTCC
TCGGCTACCGACACGGGGGCGCGCACGAGCAGTAGAGGGGAGTCTGGAAA
GCCCTTGAAGGGAGATTACCAGCCCATTGGTGTGGTGGCTGCGGTTGCGG
GCTCTACCGCTTACGGCGTCCACCATCTTGACCAGATGGAGATAAAGCGC
ATCGAGAGTGAGAGCAAGTCGGAGGTTGCTCGTATCCAGGAGAAGGCGGC
GACGGAGGTTGCTCGTATTGAGGGCGACTGTGCGCGAATCCAGGGTGAGA
GCAAGTCGGAGATTGCTCGTATCGAAAGCGACCGAAAGTTGTCAGAGCTT
TTCTGGAAGGCCGAGGTAGAGCGGTACAAGCACGACCTCCACCTTGCGCA
CACGGAAGACTATGAGCCCTATCAGGCGGCAGTTTCGAAGACAAGAAATA
AAACAAGGGGAGGAAACGGAGTATCCGAGGAGGATGAGAAGAAGGGCTAG
back to top
Synonyms
Publications