NO06G03100.1, NO06G03100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03100.1
Unique NameNO06G03100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length600
Alignment locationchr6:880723..881500 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:880723..881500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G03100.1 vs.
Match: EWM20060.1 (hypothetical protein Naga_101993g1 [Nannochloropsis gaditana])

HSP 1 Score: 150.6 bits (379), Expect = 5.200e-33
Identity = 97/202 (48.02%), Postives = 124/202 (61.39%), Query Frame = 0 
Query:    1 MLWSSATKAGAMVWRGVVASRSGKVAYCNAFWKEGLVAIGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQME----IKRIESESKSEVARIQEKAATEVARIEGDCARIQGESKSEIARIESDRKLSELFWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEKK 199
            ML     KAGAM  RG                   L   GKGRVLRG FSS   TG  TSS  E GK     +Q IG V  VAG+TA  V   DQ E    IK IES++ +E+AR+++KAA E+A+ + D AR++ ++ +EIAR+E  R +SE+FWKAEVER+K ++QLA T+DYEPYQAA+   R KTRGG   SEE E++
Sbjct:   79 MLRRFTAKAGAMARRGST-----------------LPGPGKGRVLRGGFSSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEMATEIKYIESKAAAEIARVEDKAAAEIAQAKADVARVEDKAAAEIARVEDKRTMSEMFWKAEVERFKREVQLAFTQDYEPYQAALVDKR-KTRGGTSGSEEKEEE 262
The following BLAST results are available for this feature:
BLAST of NO06G03100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20060.15.200e-3348.02hypothetical protein Naga_101993g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03100NO06G03100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03100.1NO06G03100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03100.1.cds1NO06G03100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03100.1.cds2NO06G03100.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03100.1 ID=NO06G03100.1|Name=NO06G03100.1|organism=Nannochloropsis oceanica|type=mRNA|length=600bp
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGGTGTGGAGAGGGGT
TGTGGCTTCGCGTTCAGGTAAGGTGGCATATTGTAATGCATTTTGGAAGG
AGGGCTTGGTGGCTATTGGGAAGGGACGCGTACTGCGAGGGGCGTTCTCC
TCGGCTACCGACACGGGGGCGCGCACGAGCAGTAGAGGGGAGTCTGGAAA
GCCCTTGAAGGGAGATTACCAGCCCATTGGTGTGGTGGCTGCGGTTGCGG
GCTCTACCGCTTACGGCGTCCACCATCTTGACCAGATGGAGATAAAGCGC
ATCGAGAGTGAGAGCAAGTCGGAGGTTGCTCGTATCCAGGAGAAGGCGGC
GACGGAGGTTGCTCGTATTGAGGGCGACTGTGCGCGAATCCAGGGTGAGA
GCAAGTCGGAGATTGCTCGTATCGAAAGCGACCGAAAGTTGTCAGAGCTT
TTCTGGAAGGCCGAGGTAGAGCGGTACAAGCACGACCTCCAACTTGCGCA
CACGGAAGACTATGAGCCCTATCAGGCGGCAGTTTCGAAGACAAGAAATA
AAACAAGGGGAGGAAACGGAGTATCCGAGGAGGATGAGAAGAAGGGCTAG
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protein sequence of NO06G03100.1

>NO06G03100.1-protein ID=NO06G03100.1-protein|Name=NO06G03100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MLWSSATKAGAMVWRGVVASRSGKVAYCNAFWKEGLVAIGKGRVLRGAFS
SATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQMEIKR
IESESKSEVARIQEKAATEVARIEGDCARIQGESKSEIARIESDRKLSEL
FWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEKKG*
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mRNA from alignment at chr6:880723..881500+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03100.1 ID=NO06G03100.1|Name=NO06G03100.1|organism=Nannochloropsis oceanica|type=mRNA|length=778bp|location=Sequence derived from alignment at chr6:880723..881500+ (Nannochloropsis oceanica)
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGGTGTGGAGAGGGGT
TGTGGCTTCGCGTTCAGGTAAGGTGGCATATTGTAATGCATTTTGGAAGG
AGGGCTTGGTGGCTATTGGTAAGGGGTGTTGGGAGGGGGGGGGGGGAACG
TTTGGTGCACGCGACCGCATACTGCCCGAGGGATGTTGGTTCGTTTTTAT
CTGCACGTCTATCTCGTTTGAGGTGCAATCTGTGTTGTGCGGACAAGGGC
CGGTGCCAAGGTGCTCATGCACGAGCGCATTCATACACGCCGACAGGGAA
GGGACGCGTACTGCGAGGGGCGTTCTCCTCGGCTACCGACACGGGGGCGC
GCACGAGCAGTAGAGGGGAGTCTGGAAAGCCCTTGAAGGGAGATTACCAG
CCCATTGGTGTGGTGGCTGCGGTTGCGGGCTCTACCGCTTACGGCGTCCA
CCATCTTGACCAGATGGAGATAAAGCGCATCGAGAGTGAGAGCAAGTCGG
AGGTTGCTCGTATCCAGGAGAAGGCGGCGACGGAGGTTGCTCGTATTGAG
GGCGACTGTGCGCGAATCCAGGGTGAGAGCAAGTCGGAGATTGCTCGTAT
CGAAAGCGACCGAAAGTTGTCAGAGCTTTTCTGGAAGGCCGAGGTAGAGC
GGTACAAGCACGACCTCCAACTTGCGCACACGGAAGACTATGAGCCCTAT
CAGGCGGCAGTTTCGAAGACAAGAAATAAAACAAGGGGAGGAAACGGAGT
ATCCGAGGAGGATGAGAAGAAGGGCTAG
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Coding sequence (CDS) from alignment at chr6:880723..881500+

>NO06G03100.1 ID=NO06G03100.1|Name=NO06G03100.1|organism=Nannochloropsis oceanica|type=CDS|length=600bp|location=Sequence derived from alignment at chr6:880723..881500+ (Nannochloropsis oceanica)
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGGTGTGGAGAGGGGT
TGTGGCTTCGCGTTCAGGTAAGGTGGCATATTGTAATGCATTTTGGAAGG
AGGGCTTGGTGGCTATTGGGAAGGGACGCGTACTGCGAGGGGCGTTCTCC
TCGGCTACCGACACGGGGGCGCGCACGAGCAGTAGAGGGGAGTCTGGAAA
GCCCTTGAAGGGAGATTACCAGCCCATTGGTGTGGTGGCTGCGGTTGCGG
GCTCTACCGCTTACGGCGTCCACCATCTTGACCAGATGGAGATAAAGCGC
ATCGAGAGTGAGAGCAAGTCGGAGGTTGCTCGTATCCAGGAGAAGGCGGC
GACGGAGGTTGCTCGTATTGAGGGCGACTGTGCGCGAATCCAGGGTGAGA
GCAAGTCGGAGATTGCTCGTATCGAAAGCGACCGAAAGTTGTCAGAGCTT
TTCTGGAAGGCCGAGGTAGAGCGGTACAAGCACGACCTCCAACTTGCGCA
CACGGAAGACTATGAGCCCTATCAGGCGGCAGTTTCGAAGACAAGAAATA
AAACAAGGGGAGGAAACGGAGTATCCGAGGAGGATGAGAAGAAGGGCTAG
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Synonyms
Publications