NO06G03080.1, NO06G03080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03080.1
Unique NameNO06G03080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length565
Alignment locationchr6:877085..877823 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:877085..877823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G03080.1 vs.
Match: EWM20226.1 (hypothetical protein Naga_100681g5 [Nannochloropsis gaditana])

HSP 1 Score: 118.2 bits (295), Expect = 2.300e-23
Identity = 79/168 (47.02%), Postives = 104/168 (61.90%), Query Frame = 0 
Query:    1 MLWSSATKAGAMVWRGVVASRSGKVAYCNAFWKEGLVAIGKGRVLRGAFSSATDTGARTSSRGESGKPLK---GDYQPIGVVAAVAGSTAYGVHHLDQMEIKRIESESKSEVA-------RIQGESKSEVARIQEKAATEVARIEGDCARIQGESKSEIARIESDRKL 159
            ML S ATKAGAM WR    ++SG+               GKGR LRGA  S T TG  T S G S   +K        +G+VAAVAGSTA  VHHLDQ EIKRI+ ++ ++VA       RIQ ++ +E+ RI +KAATE+A+ + D AR++GE KSE+AR+E +R+L
Sbjct:   24 MLCSLATKAGAMAWRR--GAQSGR---------------GKGRRLRGASLSTTHTGTGTGSEGGSVTTIKIVTVTVAVLGLVAAVAGSTAVAVHHLDQTEIKRIQDKATADVARDQTEIKRIQDKAATEIKRIHDKAATEIAQAKADVARVEGERKSEVARVEGERRL 174
The following BLAST results are available for this feature:
BLAST of NO06G03080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20226.12.300e-2347.02hypothetical protein Naga_100681g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03080NO06G03080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03080.1NO06G03080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03080.1.cds1NO06G03080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03080.1.cds2NO06G03080.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03080.1 ID=NO06G03080.1|Name=NO06G03080.1|organism=Nannochloropsis oceanica|type=mRNA|length=565bp
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGGTGTGGAGAGGGGT
TGTGGCTTCGCGTTCAGGTAAGGTGGCATATTGTAATGCATTTTGGAAGG
AGGGCTTGGTGGCTATTGGGAAGGGACGCGTACTGCGAGGGGCGTTCTCC
TCGGCTACCGACACGGGGGCGCGCACGAGCAGTAGAGGGGAGTCTGGAAA
GCCCTTGAAGGGAGATTACCAGCCCATTGGTGTGGTGGCCGCGGTTGCGG
GCTCTACCGCTTACGGCGTCCACCATCTTGACCAGATGGAGATAAAGCGC
ATCGAGAGTGAGAGCAAGTCGGAGGTTGCTCGTATCCAGGGTGAGAGCAA
GTCGGAGGTTGCTCGTATCCAGGAGAAGGCGGCGACGGAGGTTGCTCGTA
TTGAGGGCGACTGTGCGCGAATCCAGGGTGAGAGCAAGTCGGAGATTGCT
CGTATCGAAAGCGACCGAAAGTTGTGAGAGCTTTTCTGGAAGGCCGAGGT
AGAGCGGTACAAGCACGACCTCCAACTTGCGCACACGGAAGACTATGAGC
CCTATCAGGCGGCAG
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protein sequence of NO06G03080.1

>NO06G03080.1-protein ID=NO06G03080.1-protein|Name=NO06G03080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MLWSSATKAGAMVWRGVVASRSGKVAYCNAFWKEGLVAIGKGRVLRGAFS
SATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQMEIKR
IESESKSEVARIQGESKSEVARIQEKAATEVARIEGDCARIQGESKSEIA
RIESDRKL*
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mRNA from alignment at chr6:877085..877823+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03080.1 ID=NO06G03080.1|Name=NO06G03080.1|organism=Nannochloropsis oceanica|type=mRNA|length=739bp|location=Sequence derived from alignment at chr6:877085..877823+ (Nannochloropsis oceanica)
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGGTGTGGAGAGGGGT
TGTGGCTTCGCGTTCAGGTAAGGTGGCATATTGTAATGCATTTTGGAAGG
AGGGCTTGGTGGCTATTGGTAAGGGGTGGGGGTGGGGGGAGGGACGTTTG
GTGCACGCGACCGCATACTGCCCGAGGGATGTTGGTTCGTTTTTATCTGC
ACGTCTATCTCGTTTGAGGTGCAATCTGTGTTGTGCGGACAAGGGCCGGT
GCCAAGGTGCTCATGCACGAGCACATTCATACACGCCGACAGGGAAGGGA
CGCGTACTGCGAGGGGCGTTCTCCTCGGCTACCGACACGGGGGCGCGCAC
GAGCAGTAGAGGGGAGTCTGGAAAGCCCTTGAAGGGAGATTACCAGCCCA
TTGGTGTGGTGGCCGCGGTTGCGGGCTCTACCGCTTACGGCGTCCACCAT
CTTGACCAGATGGAGATAAAGCGCATCGAGAGTGAGAGCAAGTCGGAGGT
TGCTCGTATCCAGGGTGAGAGCAAGTCGGAGGTTGCTCGTATCCAGGAGA
AGGCGGCGACGGAGGTTGCTCGTATTGAGGGCGACTGTGCGCGAATCCAG
GGTGAGAGCAAGTCGGAGATTGCTCGTATCGAAAGCGACCGAAAGTTGTG
AGAGCTTTTCTGGAAGGCCGAGGTAGAGCGGTACAAGCACGACCTCCAAC
TTGCGCACACGGAAGACTATGAGCCCTATCAGGCGGCAG
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Coding sequence (CDS) from alignment at chr6:877085..877823+

>NO06G03080.1 ID=NO06G03080.1|Name=NO06G03080.1|organism=Nannochloropsis oceanica|type=CDS|length=477bp|location=Sequence derived from alignment at chr6:877085..877823+ (Nannochloropsis oceanica)
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGGTGTGGAGAGGGGT
TGTGGCTTCGCGTTCAGGTAAGGTGGCATATTGTAATGCATTTTGGAAGG
AGGGCTTGGTGGCTATTGGGAAGGGACGCGTACTGCGAGGGGCGTTCTCC
TCGGCTACCGACACGGGGGCGCGCACGAGCAGTAGAGGGGAGTCTGGAAA
GCCCTTGAAGGGAGATTACCAGCCCATTGGTGTGGTGGCCGCGGTTGCGG
GCTCTACCGCTTACGGCGTCCACCATCTTGACCAGATGGAGATAAAGCGC
ATCGAGAGTGAGAGCAAGTCGGAGGTTGCTCGTATCCAGGGTGAGAGCAA
GTCGGAGGTTGCTCGTATCCAGGAGAAGGCGGCGACGGAGGTTGCTCGTA
TTGAGGGCGACTGTGCGCGAATCCAGGGTGAGAGCAAGTCGGAGATTGCT
CGTATCGAAAGCGACCGAAAGTTGTGA
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Synonyms
Publications