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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr6 | genome | chr6:815528..818183 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G02840.1 vs.
Match: EWM26304.1 (protein serine threonine kinase [Nannochloropsis gaditana]) HSP 1 Score: 571.2 bits (1471), Expect = 2.600e-159 Identity = 310/423 (73.29%), Postives = 335/423 (79.20%), Query Frame = 0
Query: 1 MERYQKLEKIGEGTYGVVYKAKDRVTNEVVALKKIRLEAEDEGIPSTAIREISLLKELQHPNIVRLYDVVHTERKLTLVFEFLDQDLKKYLDICDNGLELAVLQSFLYQLLHGVAYCHDHRVLHRDLKPQNLLINRDGELKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSRKYSTPVDIWSIGCIFAEMANGRPLFAGASESDQLDRIFRALGTPTEAVYPGIVELPEFQKVKTQFPRYQSLESWASLVPTLPPLGIDLISKMLTFDPSKRISARDALAHAFFGEIHAHGHVH---IQQGMGVGGRGGEEGGGGGGVHHHHQQFHHQQQQFHNHHHHHHHQQQQQQQIQQQIQLQPMMNAHIYGAQAQHQSHHSHHHQHPSLGMPISTAPPPHLNHHHQQQQQQQQQLPPGSMGEMG 421
MERYQKLEKIGEGTYGVV+KAKDRVTNE++ALKKIRLEAEDEGIPSTAIREISLLKELQHPNIVRLYDVVHTERKLTLVFE+LDQDLKKYLD C++GL+L VLQSFLYQLLHGVA+CHDHRVLHRDLKPQNLLINR+GELKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSRKYSTPVDIWSIGCIFAEMANGRPLFAG+SESDQLDRIFRALGTPTE +YPGIVELPEFQKVK QFPRY LESWA LVPTLPP+GIDL+ KMLTFDP+KR+SARDAL+H FFG+IHAHGH H I+ GM GGRGG HH H HH HQQ Q QQ Q PM + H G SHH SL + PPH H QQ + P ++G++G
Sbjct: 1 MERYQKLEKIGEGTYGVVFKAKDRVTNEILALKKIRLEAEDEGIPSTAIREISLLKELQHPNIVRLYDVVHTERKLTLVFEYLDQDLKKYLDTCESGLDLPVLQSFLYQLLHGVAFCHDHRVLHRDLKPQNLLINREGELKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSRKYSTPVDIWSIGCIFAEMANGRPLFAGSSESDQLDRIFRALGTPTEGMYPGIVELPEFQKVKNQFPRYSPLESWAPLVPTLPPVGIDLLGKMLTFDPAKRVSARDALSHPFFGDIHAHGHAHPAQIEPGMTAGGRGGIP----------PYSIHHPP------HQHHIHQQPSQ---QQHFQHGPMHSVHPQG------SHHPTQAHGASLAL-----GPPHAGH----PAQQPSSMAPAAVGDVG 389
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G02840.1 ID=NO06G02840.1|Name=NO06G02840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2491bp
GAACTTGGGCATGGTTTCACCTGTAGCGTAGTGTGTGCGTGAACGGGGCA
TGGGAAGGGGCGGCGGGTTATAGAACAAAAAGACAGAAGATCGCCTCGAA
CAAGCTTTTGGTGTGTTGCGTCCGCCACTAATAGGACACGGTAGAGTTTC
TCAAGCCCAATACGTAAAAGAACATCAGGGCACTATGTTTATTGCACTTG
TTCAGTGCTACTGTGTGCACTAGGGCATTTGGACGGGGTCGTATGACGCG
GCGAAGTGGTCGCCATTGCCGCGTCGACCTCCCCTCTTATCCATGCAAGT
TTGCTCTCATCATCTCCTCGGCTTCCTGTCCAGCTGGGATGCGTTTGCCT
CCAAGGACAATTGACGGCGTCCTCAAGTAGACATGTTATGATGGGTTTGA
ACATTTTTCATGATCGTGGGATGGCTTGCTGTATCATGGTCTCGATCTAG
CACCCTCATCTTCCACAACCACACACACAGGCCCCTGGTTGGATTCCGGG
TCGCCGGTCCTCGTCGATTCTTCCTTGCCCGGTGACGCCCGCTCCTCCTC
CAGTCACACACATCCGCCTCCGCAACCGAGCGCTAATACTTCACCAATTA
AAAAGAAGGTTCACCTCGCCATCCTCACGTGCTATTCTAGACACAGTTCC
ACAAAATCAACCTTACGACTATCATTACAAATCATCCCCTCCTCTCGGCC
TGGACAAGAGCCTCGGCAGCAAACACCCCTGACACGCCTCAATGGAGCGG
TACCAGAAATTGGAAAAGATAGGGGAAGGCACATACGGGGTGGTGTACAA
GGCCAAGGACCGGGTGACCAATGAGGTCGTCGCTTTGAAAAAGATCCGCC
TGGAAGCCGAAGACGAAGGCATTCCTTCCACGGCCATCCGGGAGATTTCC
CTGCTCAAAGAGCTACAACACCCCAATATCGTACGCTTATACGACGTAGT
TCACACAGAGCGCAAGCTTACATTGGTATTCGAATTTCTCGACCAAGACC
TGAAAAAATACCTAGACATATGCGACAATGGCCTCGAGCTCGCCGTCCTT
CAGTCCTTCCTCTACCAGCTCCTCCACGGCGTCGCCTACTGCCACGACCA
CCGCGTGCTCCATCGGGATTTGAAACCTCAAAATCTTCTCATCAATCGCG
ACGGTGAATTAAAGCTGGCTGATTTTGGCTTGGCTCGTGCGTTCGGCATC
CCTGTCCGAAGCTACACCCACGAGGTGGTGACGCTCTGGTACCGTGCCCC
CGACGTGTTGATGGGCTCTAGGAAATACAGCACTCCGGTGGATATCTGGT
CGATTGGCTGCATTTTTGCTGAGATGGCTAACGGACGGCCATTGTTTGCG
GGGGCCTCGGAGAGTGATCAATTGGATAGAATTTTTCGCGCCCTTGGCAC
GCCCACCGAGGCCGTCTACCCTGGTATAGTGGAGCTGCCGGAATTTCAAA
AAGTCAAAACACAATTTCCACGTTATCAATCCCTGGAGTCCTGGGCGAGT
TTAGTGCCGACGTTACCGCCGTTGGGGATCGATTTGATCAGTAAGATGTT
GACATTTGACCCGTCGAAGAGGATATCAGCGAGAGATGCCTTGGCCCATG
CCTTCTTTGGGGAGATCCATGCGCATGGCCATGTGCATATACAGCAGGGA
ATGGGGGTTGGTGGAAGGGGGGGAGAAGAAGGAGGAGGAGGGGGGGGGGT
CCACCATCATCATCAGCAGTTCCATCATCAGCAGCAGCAGTTCCATAATC
ACCATCATCACCACCATCATCAACAACAGCAGCAACAGCAGATCCAGCAG
CAAATCCAACTGCAGCCAATGATGAATGCGCACATTTATGGCGCCCAAGC
ACAACATCAATCTCACCACAGCCACCATCATCAGCATCCATCACTTGGCA
TGCCTATTTCCACGGCGCCACCACCACACCTAAACCACCACCACCAGCAG
CAGCAACAGCAGCAGCAACAGCTACCACCAGGCTCGATGGGTGAAATGGG
AGGCAGATTTTAGACTAGGAAGGATTTTCCAGTGATGTCTCAGTGTGCAT
AGAAATAAAGGACGAGGAGACAGGGAAAAAACCCTGGGGGGATTACTGAA
GTATGAGCGAGGGATGGGGAGGGAATGACTGGCTGCAAGATAAAGTCATG
AGGAGATGAGACGGAGGATAGGATAATCAAACAAAGACCACAGCAGTCCT
TTGCCAGCAGCGTGCAAGAAGGCTGATCGACAAGGAGGTAAAGATTGCGA
AAGATGGTGAGCATATTAAGTGTCAAAAGGGTAGAAAGAAAGAGAGAAGG
TAAGTGTGCTGCACTAGCCCACTTGGGGGAAGAAAACGAAGAAATTATAA
TTCTCTGCCCCAGTGGCACTGAGGGTGTATAAAGTAGCACGAAAGTAGGA
TAACAGCAATTAGAACAAAACTTCATCCGAAACAAAACCAAAGACAAAGG
AAGTGAATGACAACGAGAAGCTGACCGAGACTGAAACCAAT back to topprotein sequence of NO06G02840.1 >NO06G02840.1-protein ID=NO06G02840.1-protein|Name=NO06G02840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=424bp
MERYQKLEKIGEGTYGVVYKAKDRVTNEVVALKKIRLEAEDEGIPSTAIR
EISLLKELQHPNIVRLYDVVHTERKLTLVFEFLDQDLKKYLDICDNGLEL
AVLQSFLYQLLHGVAYCHDHRVLHRDLKPQNLLINRDGELKLADFGLARA
FGIPVRSYTHEVVTLWYRAPDVLMGSRKYSTPVDIWSIGCIFAEMANGRP
LFAGASESDQLDRIFRALGTPTEAVYPGIVELPEFQKVKTQFPRYQSLES
WASLVPTLPPLGIDLISKMLTFDPSKRISARDALAHAFFGEIHAHGHVHI
QQGMGVGGRGGEEGGGGGGVHHHHQQFHHQQQQFHNHHHHHHHQQQQQQQ
IQQQIQLQPMMNAHIYGAQAQHQSHHSHHHQHPSLGMPISTAPPPHLNHH
HQQQQQQQQQLPPGSMGEMGGRF* back to topmRNA from alignment at chr6:815528..818183+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G02840.1 ID=NO06G02840.1|Name=NO06G02840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2656bp|location=Sequence derived from alignment at chr6:815528..818183+ (Nannochloropsis oceanica)
GAACTTGGGCATGGTTTCACCTGTAGCGTAGTGTGTGCGTGAACGGGGCA
TGGGAAGGGGCGGCGGGTTATAGAACAAAAAGACAGAAGATCGCCTCGAA
CAAGCTTTTGGTGTGTTGCGTCCGCCACTAATAGGACACGGTAGAGTTTC
TCAAGCCCAATACGTAAAAGAACATCAGGGCACTATGTTTATTGCACTTG
TTCAGTGCTACTGTGTGCACTAGGGCATTTGGACGGGGTCGTATGACGCG
GCGAAGTGGTCGCCATTGCCGCGTCGACCTCCCCTCTTATCCATGCAAGT
TTGCTCTCATCATCTCCTCGGCTTCCTGTCCAGCTGGGATGCGTTTGCCT
CCAAGGACAATTGACGGCGTCCTCAAGTAGACATGTTATGATGGGTTTGA
ACATTTTTCATGATCGTGGGATGGCTTGCTGTATCATGGTCTCGATCTAG
CACCCTCATCTTCCACAACCACACACACAGGCCCCTGGTTGGATTCCGGG
TCGCCGGTCCTCGTCGATTCTTCCTTGCCCGGTGACGCCCGCTCCTCCTC
CAGTCACACACATCCGCCTCCGCAACCGAGCGCTAATACTTCACCAATTA
AAAAGAAGGTTCACCTCGCCATCCTCACGTGCTATTCTAGACACAGTTCC
ACAAAATCAACCTTACGACTATCATTACAAATCATCCCCTCCTCTCGGCC
TGGACAAGAGCCTCGGCAGCAAACACCCCTGACACGCCTCAATGGAGCGG
TACCAGAAATTGGAAAAGATAGGGGAAGGCACATACGGGGTGGTGTACAA
GGCCAAGGACCGGGTGACCAATGAGGTCGTCGCTTTGAAAAAGATCCGCC
TGGAAGCCGAAGACGAAGGCATTCCTTCCACGGCCATCCGGGAGATTTCC
CTGCTCAAAGAGCTACAACACCCCAATATCGTACGCTTATACGACGTAGT
TCACACAGAGCGCAAGCTTACATTGGTATTCGAATTTCTCGACCAAGACC
TGAAAAAATACCTAGACATATGCGACAATGGCCTCGAGCTCGCCGTCCTT
CAGTCCTTCCTCTACCAGCTCCTCCACGGCGTCGCCTACTGCCACGACCA
CCGCGTGCTCCATCGGGATTTGAAACCTCAAAATCTTCTCATCAATCGCG
ACGGTGAATTAAAGCTGGCTGATTTTGGCTTGGCTCGTGCGTTCGGCATC
CCTGTCCGAAGCTACACCCACGAGGTGGTGACGCTCTGGTACCGTGCCCC
CGACGTGTTGATGGGCTCTAGGAAATACAGCACTCCGGTGGATATCTGGT
CGATTGGCTGCATTTTTGCTGAGATGGCTAACGGACGGCCATTGTTTGCG
GGGGCCTCGGAGAGTGATCAATTGGATAGGTGAGGAGGGAGGAAAGGAGG
GAGGGAGGAAGGGAGGAAAGGAGCATTTGCCGACGGTGATCCACCATCTC
TTGAAGATATTCTCGGGTCTTGCAGATCTGATTCCCACACACGAATTCCT
ATTCCTCATTTTTTTGTTCCTTTCCCCTCCCCGTCTTGCAATAGAATTTT
TCGCGCCCTTGGCACGCCCACCGAGGCCGTCTACCCTGGTATAGTGGAGC
TGCCGGAATTTCAAAAAGTCAAAACACAATTTCCACGTTATCAATCCCTG
GAGTCCTGGGCGAGTTTAGTGCCGACGTTACCGCCGTTGGGGATCGATTT
GATCAGTAAGATGTTGACATTTGACCCGTCGAAGAGGATATCAGCGAGAG
ATGCCTTGGCCCATGCCTTCTTTGGGGAGATCCATGCGCATGGCCATGTG
CATATACAGCAGGGAATGGGGGTTGGTGGAAGGGGGGGAGAAGAAGGAGG
AGGAGGGGGGGGGGTCCACCATCATCATCAGCAGTTCCATCATCAGCAGC
AGCAGTTCCATAATCACCATCATCACCACCATCATCAACAACAGCAGCAA
CAGCAGATCCAGCAGCAAATCCAACTGCAGCCAATGATGAATGCGCACAT
TTATGGCGCCCAAGCACAACATCAATCTCACCACAGCCACCATCATCAGC
ATCCATCACTTGGCATGCCTATTTCCACGGCGCCACCACCACACCTAAAC
CACCACCACCAGCAGCAGCAACAGCAGCAGCAACAGCTACCACCAGGCTC
GATGGGTGAAATGGGAGGCAGATTTTAGACTAGGAAGGATTTTCCAGTGA
TGTCTCAGTGTGCATAGAAATAAAGGACGAGGAGACAGGGAAAAAACCCT
GGGGGGATTACTGAAGTATGAGCGAGGGATGGGGAGGGAATGACTGGCTG
CAAGATAAAGTCATGAGGAGATGAGACGGAGGATAGGATAATCAAACAAA
GACCACAGCAGTCCTTTGCCAGCAGCGTGCAAGAAGGCTGATCGACAAGG
AGGTAAAGATTGCGAAAGATGGTGAGCATATTAAGTGTCAAAAGGGTAGA
AAGAAAGAGAGAAGGTAAGTGTGCTGCACTAGCCCACTTGGGGGAAGAAA
ACGAAGAAATTATAATTCTCTGCCCCAGTGGCACTGAGGGTGTATAAAGT
AGCACGAAAGTAGGATAACAGCAATTAGAACAAAACTTCATCCGAAACAA
AACCAAAGACAAAGGAAGTGAATGACAACGAGAAGCTGACCGAGACTGAA
ACCAAT back to topCoding sequence (CDS) from alignment at chr6:815528..818183+ >NO06G02840.1 ID=NO06G02840.1|Name=NO06G02840.1|organism=Nannochloropsis oceanica|type=CDS|length=1272bp|location=Sequence derived from alignment at chr6:815528..818183+ (Nannochloropsis oceanica)
ATGGAGCGGTACCAGAAATTGGAAAAGATAGGGGAAGGCACATACGGGGT
GGTGTACAAGGCCAAGGACCGGGTGACCAATGAGGTCGTCGCTTTGAAAA
AGATCCGCCTGGAAGCCGAAGACGAAGGCATTCCTTCCACGGCCATCCGG
GAGATTTCCCTGCTCAAAGAGCTACAACACCCCAATATCGTACGCTTATA
CGACGTAGTTCACACAGAGCGCAAGCTTACATTGGTATTCGAATTTCTCG
ACCAAGACCTGAAAAAATACCTAGACATATGCGACAATGGCCTCGAGCTC
GCCGTCCTTCAGTCCTTCCTCTACCAGCTCCTCCACGGCGTCGCCTACTG
CCACGACCACCGCGTGCTCCATCGGGATTTGAAACCTCAAAATCTTCTCA
TCAATCGCGACGGTGAATTAAAGCTGGCTGATTTTGGCTTGGCTCGTGCG
TTCGGCATCCCTGTCCGAAGCTACACCCACGAGGTGGTGACGCTCTGGTA
CCGTGCCCCCGACGTGTTGATGGGCTCTAGGAAATACAGCACTCCGGTGG
ATATCTGGTCGATTGGCTGCATTTTTGCTGAGATGGCTAACGGACGGCCA
TTGTTTGCGGGGGCCTCGGAGAGTGATCAATTGGATAGAATTTTTCGCGC
CCTTGGCACGCCCACCGAGGCCGTCTACCCTGGTATAGTGGAGCTGCCGG
AATTTCAAAAAGTCAAAACACAATTTCCACGTTATCAATCCCTGGAGTCC
TGGGCGAGTTTAGTGCCGACGTTACCGCCGTTGGGGATCGATTTGATCAG
TAAGATGTTGACATTTGACCCGTCGAAGAGGATATCAGCGAGAGATGCCT
TGGCCCATGCCTTCTTTGGGGAGATCCATGCGCATGGCCATGTGCATATA
CAGCAGGGAATGGGGGTTGGTGGAAGGGGGGGAGAAGAAGGAGGAGGAGG
GGGGGGGGTCCACCATCATCATCAGCAGTTCCATCATCAGCAGCAGCAGT
TCCATAATCACCATCATCACCACCATCATCAACAACAGCAGCAACAGCAG
ATCCAGCAGCAAATCCAACTGCAGCCAATGATGAATGCGCACATTTATGG
CGCCCAAGCACAACATCAATCTCACCACAGCCACCATCATCAGCATCCAT
CACTTGGCATGCCTATTTCCACGGCGCCACCACCACACCTAAACCACCAC
CACCAGCAGCAGCAACAGCAGCAGCAACAGCTACCACCAGGCTCGATGGG
TGAAATGGGAGGCAGATTTTAG back to top
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