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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:479148..482433 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G01510.1 vs.
Match: EWM26176.1 (Polyprenyl synthetase [Nannochloropsis gaditana]) HSP 1 Score: 703.7 bits (1815), Expect = 4.000e-199 Identity = 384/512 (75.00%), Postives = 429/512 (83.79%), Query Frame = 0
Query: 1 MTTTSTSRYLVATASSSSSSSDTASTPVLPARRQQQQQHGRRRRAAG----WGMATAATAVVCLAAVAQGFVLPSSSISNPAASRESSSSPSRTAGRRS-----SIPALQAGVLSKLDFKPAVDLYAKFPDPP--TNNAAAAAGMPNDEPTLLTTTPQPPAIIMSMDGPAPNNVDPFQLVKKDLAPFSDSIKELVETENPVLTAAAKHFFEKRHGKRFRPTIAMLMSRAVVAGGAADLEMGGASAIPVPLTDSLRYQRQSQLAQITEMIHVASLIHDDVLDEADTRRGDKSVHKLYSNKVAVLAGDYLLARASVLLARLENVQVVEIMANALDALVQGEIMQAKSSSKDLLDLGHYLRKSYYKTASLICNSCCSAALLGGYAHGSPTVVAAEKYGYHLGLAYQVIDDVLDFTGSADVLGKPAMADMSLGLATAPILYAAEEKKELKPLIKRRFKEKGDVEATYKMVLGTEGVDRSYQLALFHAQRAVDSIASFPPSEAKDGLIKLAHMVLTR 502
MTTTS R+ ++TAS + +++ + ++ Q GRRRR +G WG+A+AATAV+ A VA GFV P +S A + AG+RS S +L AGVLSKLDFKPAVD+YAKFP+PP + + + ++E TLLTT P+I+MS+DGPAPN+VDPF LVKKDLAPFSDSIKELVETENPVLTAAAKHFFEKRHGKRFRPTIAMLMSRAV AGGA D ++GGA A P+P+ D LRYQRQSQLAQITEMIHVASLIHDDVLDEADTRRGD +VHKLYSNKVAVLAGDYLLARASVLLARLENVQVVEIMANALDALVQGEIMQAKSS+KDLLDLGHYLRKSYYKTASLICNSCCSAALLGGY +GSPT VAAEKYGYHLGLAYQVIDDVLDFTG+ADVLGKPAMADM+LGLATAPILYAAEEKKELKPLIKRRFKE+GDVE TYK+V+GTEGV+R+YQLA+FHAQRAVD+IASFPPSEAKDGLIKLAHM R
Sbjct: 31 MTTTSIRRHRISTASLLAMETNSTRDSLRTQQQDQPHHAGRRRRTSGSYAAWGLASAATAVMYFATVAHGFVTPLTSAPFRQAEAGNGLVSGSFAGKRSVCAGQSATSLGAGVLSKLDFKPAVDVYAKFPEPPKTAGTSTGTSTLSHEEVTLLTTAASQPSIVMSLDGPAPNDVDPFALVKKDLAPFSDSIKELVETENPVLTAAAKHFFEKRHGKRFRPTIAMLMSRAVQAGGAIDRDVGGAMATPMPVVDPLRYQRQSQLAQITEMIHVASLIHDDVLDEADTRRGDLAVHKLYSNKVAVLAGDYLLARASVLLARLENVQVVEIMANALDALVQGEIMQAKSSAKDLLDLGHYLRKSYYKTASLICNSCCSAALLGGYTYGSPTTVAAEKYGYHLGLAYQVIDDVLDFTGTADVLGKPAMADMTLGLATAPILYAAEEKKELKPLIKRRFKEQGDVEQTYKLVMGTEGVERAYQLAVFHAQRAVDAIASFPPSEAKDGLIKLAHMAPVR 542
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G01510.1 ID=NO06G01510.1|Name=NO06G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=3286bp TTCCCCTAATTCCAGCAACGACACAAGAGGCCTTCTCTCTGGCCCGACCC CGCCACGCCCTCTGCTGAGCAAGCATGTTCGGGGTGTCTTGTGATGTGCG TGGTCAGTCGGGGTTGCTGTTTGGTTGATTCAGTCCTTTGCTGGGCTTTT ATTTTGCTGTGGTGTGACACAGACACTGGTTTTGGCCTTGCCCTCTCTGT CACCTCCGCCTAGTGAGTCACGACGCACCCTCGTTGGATCGATGAACACG TACGGATGCCTTTGGGAGACGGCGTAGCTGAGACAGCCCGGGGCATTCAT TCTTTGCGCCGTCACTTCTTGTTGAGTCGTCTTTATTTCCAGATGGACAC ACGCCCATCCACATCACTTTGCAATGTCATCACCCAGGCGACTTGTTCCC ACCGCAGTCCACACGACGACAAGCAGGCACTCTTCGTCGTGATGCCAATG TGGTATCCAGGGAGCCACGCCCGTTCCCTTCTTGCATTTGTCATTCTGCG AGCTGCCCCCACAACATGCACAGACACTGTGCCACACCATGCAACACCGT CACAACTTGACTAACTCCTTCTCCTCTTTCTTGTCCCCAGCTCAGGCTTT TGTCACCGCTGGGTCTCCCCAACCCACAGCAAAACCAGGATCGAAGCGGC GCATCGAGTCAGCAACATCACAATCAGCAAAAAAACATTCTGTCATCCAT CATGACCACCACCAGCACCAGCAGATATCTGGTAGCAACGGCATCTTCTT CCTCCTCGTCCTCGGACACTGCCAGCACTCCTGTGTTGCCGGCCCGGAGA CAGCAGCAGCAGCAGCATGGGAGAAGAAGACGGGCGGCCGGATGGGGCAT GGCGACGGCAGCCACAGCGGTCGTGTGCCTGGCCGCTGTCGCACAGGGCT TTGTCCTGCCTTCCTCCTCCATTAGCAACCCTGCAGCCTCCCGCGAGAGC AGCTCTTCGCCCTCGCGCACGGCGGGTCGTCGTAGCTCGATACCAGCACT CCAGGCAGGCGTGTTGAGCAAGTTGGACTTCAAGCCCGCCGTTGACTTGT ACGCCAAATTCCCCGACCCTCCCACCAATAACGCCGCCGCTGCTGCGGGC ATGCCTAACGATGAACCTACCCTCCTGACTACCACGCCGCAACCTCCCGC TATCATAATGTCCATGGACGGCCCTGCACCCAACAACGTGGATCCCTTTC AGCTGGTAAAGAAGGACCTCGCCCCCTTCTCTGACTCTATCAAGGAGCTT GTCGAGACGGAAAATCCTGTACTGACTGCCGCGGCGAAGCACTTCTTTGA GAAACGACACGGGAAACGCTTTCGTCCCACCATTGCCATGCTCATGTCAC GCGCCGTCGTGGCAGGAGGGGCCGCGGATTTGGAGATGGGGGGTGCAAGC GCGATTCCTGTGCCCTTAACAGATTCGTTGAGGTACCAACGGCAGAGTCA ACTTGCCCAGATCACAGAGATGATTCATGTTGCGAGTTTGATCCATGACG ACGTGTTGGACGAGGCGGATACGAGGCGGGGGGATAAGAGTGTGCATAAG CTGTACTCGAACAAGGTGGCGGTGTTGGCGGGCGATTACTTGCTCGCCCG AGCCTCGGTCTTGTTGGCACGATTGGAGAATGTGCAGGTGGTGGAAATTA TGGCAAATGCGCTGGATGCCCTGGTGCAAGGTGAGATCATGCAAGCGAAA AGCAGCAGTAAGGACCTACTCGACCTCGGGCATTACCTCCGCAAGAGCTA CTACAAGACCGCGTCGCTCATCTGCAACTCGTGCTGTTCGGCGGCTTTGT TGGGGGGGTACGCCCACGGTAGCCCGACGGTGGTTGCTGCAGAGAAATAC GGGTATCATCTGGGGCTGGCCTACCAGGTGATTGACGACGTATTGGATTT CACAGGCTCCGCGGACGTGCTTGGGAAGCCAGCCATGGCCGACATGAGCC TGGGACTGGCGACTGCCCCCATCTTGTACGCGGCCGAGGAGAAGAAAGAG TTGAAACCGTTGATCAAGAGGCGGTTCAAGGAAAAGGGGGACGTGGAGGC CACCTACAAGATGGTGTTGGGCACCGAGGGCGTGGACAGGTCATACCAGC TGGCCTTGTTCCATGCTCAGCGGGCGGTGGATTCGATAGCGTCTTTTCCT CCCTCGGAGGCTAAGGACGGGCTGATCAAGTTGGCGCATATGGTGCTGAC CCGCAGTAGTTAAAGAGAAACGAGTCAGGAAGGAAGGAAGGAAGGAAGGA TGGATGGATGGAGGGACTAGAGGGGAAGCCACCATGTGTTTTAGTAGAAC GGCAATGACAGCTACAGCAGCAATAGCAACAGCACTTTTTCTTTTTCTTT TTATTGGCCATCAACAACAGAACCAGGGCAAGGAAGGGAAGGTGAACAGG GTAAGAAACGCGTGCAGCAGCAACAACAGCAACAGCAGTAGTAGCAGCAG AAGCGGTAATAGCCTTTCACCCCCATCTTCTCATCACACAATCTTTGTCT TCTGTCTCCCTTTTCTAATCGTGCGTTATGAGTAGGAAGAAAGAGGATAT CAATAGACAGAGAGGAAGGGAGCTCTTCAACCTTCCCTAAAATAAAATAA TTTAAAAGTTAAAAGTACGGGCAAGTAGCAGCAACAGAACCTTATATCTC ATGCCCAACCCTACAAGTGACGACGTTGATACTGGAGCAGAGAAAGAGTG CGTGAGAGAAAATCAGTGAAGAGAAACTAGAGAAGAAAATTAAGGGGAGA GAAAGAGAAAGACGGAAGGAAGGAGGAGCATTGTACATAGAGAGGAAGAG CAACCTGAGAGAGTACTACTCCAGCCCCCCGGAGAATAGAAGATGACGGG GTGTGTTTGAAAGAAAACGAGAGGATTAGGTGTGGGTCTGAGAGTGATTA TCAAGGACAAAAATTCTTGGTATGCGGAAGAGAAAATTAAGGGAGGTGGA GGAAATATAATGGGAAACAGAAACCAGTTAGGTCTTTCCTATTTATGTCC CCAGCGAGTTGCGCGTCTTTGGCGCGTGGCCCGTTTGTGTATGAGTGCAT AAGAAAGGTTGGAGAAGGTAGAAAGAAAACAATGGGAACCAGGAATGTAG GGAAATAAGGAGAGGGAGGGAAGACAGGTCTGTTTCCCTCGCACCCACTC ACTCTCAACTCTTCCAGTCACGTGCTGGCCCTAGTGACACGGCAGGCGAG GCCCACATTAAATTACCATTAAAAAAGAAAGGAAACTATCGAGTGATCAC AGGAAAGATTTGGTCTTGTTGCTTTTGCTGTGCTCC back to topprotein sequence of NO06G01510.1 >NO06G01510.1-protein ID=NO06G01510.1-protein|Name=NO06G01510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=504bp MTTTSTSRYLVATASSSSSSSDTASTPVLPARRQQQQQHGRRRRAAGWGM ATAATAVVCLAAVAQGFVLPSSSISNPAASRESSSSPSRTAGRRSSIPAL QAGVLSKLDFKPAVDLYAKFPDPPTNNAAAAAGMPNDEPTLLTTTPQPPA IIMSMDGPAPNNVDPFQLVKKDLAPFSDSIKELVETENPVLTAAAKHFFE KRHGKRFRPTIAMLMSRAVVAGGAADLEMGGASAIPVPLTDSLRYQRQSQ LAQITEMIHVASLIHDDVLDEADTRRGDKSVHKLYSNKVAVLAGDYLLAR ASVLLARLENVQVVEIMANALDALVQGEIMQAKSSSKDLLDLGHYLRKSY YKTASLICNSCCSAALLGGYAHGSPTVVAAEKYGYHLGLAYQVIDDVLDF TGSADVLGKPAMADMSLGLATAPILYAAEEKKELKPLIKRRFKEKGDVEA TYKMVLGTEGVDRSYQLALFHAQRAVDSIASFPPSEAKDGLIKLAHMVLT RSS* back to topmRNA from alignment at chr6:479148..482433- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G01510.1 ID=NO06G01510.1|Name=NO06G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=3286bp|location=Sequence derived from alignment at chr6:479148..482433- (Nannochloropsis oceanica) TTCCCCTAATTCCAGCAACGACACAAGAGGCCTTCTCTCTGGCCCGACCC
CGCCACGCCCTCTGCTGAGCAAGCATGTTCGGGGTGTCTTGTGATGTGCG
TGGTCAGTCGGGGTTGCTGTTTGGTTGATTCAGTCCTTTGCTGGGCTTTT
ATTTTGCTGTGGTGTGACACAGACACTGGTTTTGGCCTTGCCCTCTCTGT
CACCTCCGCCTAGTGAGTCACGACGCACCCTCGTTGGATCGATGAACACG
TACGGATGCCTTTGGGAGACGGCGTAGCTGAGACAGCCCGGGGCATTCAT
TCTTTGCGCCGTCACTTCTTGTTGAGTCGTCTTTATTTCCAGATGGACAC
ACGCCCATCCACATCACTTTGCAATGTCATCACCCAGGCGACTTGTTCCC
ACCGCAGTCCACACGACGACAAGCAGGCACTCTTCGTCGTGATGCCAATG
TGGTATCCAGGGAGCCACGCCCGTTCCCTTCTTGCATTTGTCATTCTGCG
AGCTGCCCCCACAACATGCACAGACACTGTGCCACACCATGCAACACCGT
CACAACTTGACTAACTCCTTCTCCTCTTTCTTGTCCCCAGCTCAGGCTTT
TGTCACCGCTGGGTCTCCCCAACCCACAGCAAAACCAGGATCGAAGCGGC
GCATCGAGTCAGCAACATCACAATCAGCAAAAAAACATTCTGTCATCCAT
CATGACCACCACCAGCACCAGCAGATATCTGGTAGCAACGGCATCTTCTT
CCTCCTCGTCCTCGGACACTGCCAGCACTCCTGTGTTGCCGGCCCGGAGA
CAGCAGCAGCAGCAGCATGGGAGAAGAAGACGGGCGGCCGGATGGGGCAT
GGCGACGGCAGCCACAGCGGTCGTGTGCCTGGCCGCTGTCGCACAGGGCT
TTGTCCTGCCTTCCTCCTCCATTAGCAACCCTGCAGCCTCCCGCGAGAGC
AGCTCTTCGCCCTCGCGCACGGCGGGTCGTCGTAGCTCGATACCAGCACT
CCAGGCAGGCGTGTTGAGCAAGTTGGACTTCAAGCCCGCCGTTGACTTGT
ACGCCAAATTCCCCGACCCTCCCACCAATAACGCCGCCGCTGCTGCGGGC
ATGCCTAACGATGAACCTACCCTCCTGACTACCACGCCGCAACCTCCCGC
TATCATAATGTCCATGGACGGCCCTGCACCCAACAACGTGGATCCCTTTC
AGCTGGTAAAGAAGGACCTCGCCCCCTTCTCTGACTCTATCAAGGAGCTT
GTCGAGACGGAAAATCCTGTACTGACTGCCGCGGCGAAGCACTTCTTTGA
GAAACGACACGGGAAACGCTTTCGTCCCACCATTGCCATGCTCATGTCAC
GCGCCGTCGTGGCAGGAGGGGCCGCGGATTTGGAGATGGGGGGTGCAAGC
GCGATTCCTGTGCCCTTAACAGATTCGTTGAGGTACCAACGGCAGAGTCA
ACTTGCCCAGATCACAGAGATGATTCATGTTGCGAGTTTGATCCATGACG
ACGTGTTGGACGAGGCGGATACGAGGCGGGGGGATAAGAGTGTGCATAAG
CTGTACTCGAACAAGGTGGCGGTGTTGGCGGGCGATTACTTGCTCGCCCG
AGCCTCGGTCTTGTTGGCACGATTGGAGAATGTGCAGGTGGTGGAAATTA
TGGCAAATGCGCTGGATGCCCTGGTGCAAGGTGAGATCATGCAAGCGAAA
AGCAGCAGTAAGGACCTACTCGACCTCGGGCATTACCTCCGCAAGAGCTA
CTACAAGACCGCGTCGCTCATCTGCAACTCGTGCTGTTCGGCGGCTTTGT
TGGGGGGGTACGCCCACGGTAGCCCGACGGTGGTTGCTGCAGAGAAATAC
GGGTATCATCTGGGGCTGGCCTACCAGGTGATTGACGACGTATTGGATTT
CACAGGCTCCGCGGACGTGCTTGGGAAGCCAGCCATGGCCGACATGAGCC
TGGGACTGGCGACTGCCCCCATCTTGTACGCGGCCGAGGAGAAGAAAGAG
TTGAAACCGTTGATCAAGAGGCGGTTCAAGGAAAAGGGGGACGTGGAGGC
CACCTACAAGATGGTGTTGGGCACCGAGGGCGTGGACAGGTCATACCAGC
TGGCCTTGTTCCATGCTCAGCGGGCGGTGGATTCGATAGCGTCTTTTCCT
CCCTCGGAGGCTAAGGACGGGCTGATCAAGTTGGCGCATATGGTGCTGAC
CCGCAGTAGTTAAAGAGAAACGAGTCAGGAAGGAAGGAAGGAAGGAAGGA
TGGATGGATGGAGGGACTAGAGGGGAAGCCACCATGTGTTTTAGTAGAAC
GGCAATGACAGCTACAGCAGCAATAGCAACAGCACTTTTTCTTTTTCTTT
TTATTGGCCATCAACAACAGAACCAGGGCAAGGAAGGGAAGGTGAACAGG
GTAAGAAACGCGTGCAGCAGCAACAACAGCAACAGCAGTAGTAGCAGCAG
AAGCGGTAATAGCCTTTCACCCCCATCTTCTCATCACACAATCTTTGTCT
TCTGTCTCCCTTTTCTAATCGTGCGTTATGAGTAGGAAGAAAGAGGATAT
CAATAGACAGAGAGGAAGGGAGCTCTTCAACCTTCCCTAAAATAAAATAA
TTTAAAAGTTAAAAGTACGGGCAAGTAGCAGCAACAGAACCTTATATCTC
ATGCCCAACCCTACAAGTGACGACGTTGATACTGGAGCAGAGAAAGAGTG
CGTGAGAGAAAATCAGTGAAGAGAAACTAGAGAAGAAAATTAAGGGGAGA
GAAAGAGAAAGACGGAAGGAAGGAGGAGCATTGTACATAGAGAGGAAGAG
CAACCTGAGAGAGTACTACTCCAGCCCCCCGGAGAATAGAAGATGACGGG
GTGTGTTTGAAAGAAAACGAGAGGATTAGGTGTGGGTCTGAGAGTGATTA
TCAAGGACAAAAATTCTTGGTATGCGGAAGAGAAAATTAAGGGAGGTGGA
GGAAATATAATGGGAAACAGAAACCAGTTAGGTCTTTCCTATTTATGTCC
CCAGCGAGTTGCGCGTCTTTGGCGCGTGGCCCGTTTGTGTATGAGTGCAT
AAGAAAGGTTGGAGAAGGTAGAAAGAAAACAATGGGAACCAGGAATGTAG
GGAAATAAGGAGAGGGAGGGAAGACAGGTCTGTTTCCCTCGCACCCACTC
ACTCTCAACTCTTCCAGTCACGTGCTGGCCCTAGTGACACGGCAGGCGAG
GCCCACATTAAATTACCATTAAAAAAGAAAGGAAACTATCGAGTGATCAC
AGGAAAGATTTGGTCTTGTTGCTTTTGCTGTGCTCC back to topCoding sequence (CDS) from alignment at chr6:479148..482433- >NO06G01510.1 ID=NO06G01510.1|Name=NO06G01510.1|organism=Nannochloropsis oceanica|type=CDS|length=1512bp|location=Sequence derived from alignment at chr6:479148..482433- (Nannochloropsis oceanica) ATGACCACCACCAGCACCAGCAGATATCTGGTAGCAACGGCATCTTCTTC CTCCTCGTCCTCGGACACTGCCAGCACTCCTGTGTTGCCGGCCCGGAGAC AGCAGCAGCAGCAGCATGGGAGAAGAAGACGGGCGGCCGGATGGGGCATG GCGACGGCAGCCACAGCGGTCGTGTGCCTGGCCGCTGTCGCACAGGGCTT TGTCCTGCCTTCCTCCTCCATTAGCAACCCTGCAGCCTCCCGCGAGAGCA GCTCTTCGCCCTCGCGCACGGCGGGTCGTCGTAGCTCGATACCAGCACTC CAGGCAGGCGTGTTGAGCAAGTTGGACTTCAAGCCCGCCGTTGACTTGTA CGCCAAATTCCCCGACCCTCCCACCAATAACGCCGCCGCTGCTGCGGGCA TGCCTAACGATGAACCTACCCTCCTGACTACCACGCCGCAACCTCCCGCT ATCATAATGTCCATGGACGGCCCTGCACCCAACAACGTGGATCCCTTTCA GCTGGTAAAGAAGGACCTCGCCCCCTTCTCTGACTCTATCAAGGAGCTTG TCGAGACGGAAAATCCTGTACTGACTGCCGCGGCGAAGCACTTCTTTGAG AAACGACACGGGAAACGCTTTCGTCCCACCATTGCCATGCTCATGTCACG CGCCGTCGTGGCAGGAGGGGCCGCGGATTTGGAGATGGGGGGTGCAAGCG CGATTCCTGTGCCCTTAACAGATTCGTTGAGGTACCAACGGCAGAGTCAA CTTGCCCAGATCACAGAGATGATTCATGTTGCGAGTTTGATCCATGACGA CGTGTTGGACGAGGCGGATACGAGGCGGGGGGATAAGAGTGTGCATAAGC TGTACTCGAACAAGGTGGCGGTGTTGGCGGGCGATTACTTGCTCGCCCGA GCCTCGGTCTTGTTGGCACGATTGGAGAATGTGCAGGTGGTGGAAATTAT GGCAAATGCGCTGGATGCCCTGGTGCAAGGTGAGATCATGCAAGCGAAAA GCAGCAGTAAGGACCTACTCGACCTCGGGCATTACCTCCGCAAGAGCTAC TACAAGACCGCGTCGCTCATCTGCAACTCGTGCTGTTCGGCGGCTTTGTT GGGGGGGTACGCCCACGGTAGCCCGACGGTGGTTGCTGCAGAGAAATACG GGTATCATCTGGGGCTGGCCTACCAGGTGATTGACGACGTATTGGATTTC ACAGGCTCCGCGGACGTGCTTGGGAAGCCAGCCATGGCCGACATGAGCCT GGGACTGGCGACTGCCCCCATCTTGTACGCGGCCGAGGAGAAGAAAGAGT TGAAACCGTTGATCAAGAGGCGGTTCAAGGAAAAGGGGGACGTGGAGGCC ACCTACAAGATGGTGTTGGGCACCGAGGGCGTGGACAGGTCATACCAGCT GGCCTTGTTCCATGCTCAGCGGGCGGTGGATTCGATAGCGTCTTTTCCTC CCTCGGAGGCTAAGGACGGGCTGATCAAGTTGGCGCATATGGTGCTGACC CGCAGTAGTTAA back to top
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