NO06G01470.1, NO06G01470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01470.1
Unique NameNO06G01470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1261
Alignment locationchr6:466767..468923 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:466767..468923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G01470.1 vs.
Match: EWM26182.1 (alpha beta fold family protein [Nannochloropsis gaditana])

HSP 1 Score: 596.3 bits (1536), Expect = 7.100e-167
Identity = 281/336 (83.63%), Postives = 305/336 (90.77%), Query Frame = 0 
Query:   59 PLVASVMDQ-AMPGLPKKTTRPDLPTTFWIWKRSPGEEYKIRYHQSGEKGPALVLIHGFGGNANHWAQNVPDLNPHYRVYALDLLGYGYSDKPSPKGRPPTELFNFETWSAMTEAFITDIIHPQSPLDKPEEEEKDGVYLVCNSVGGLVGLQLAVDRPSLVRGVMLLNISLRMLHLKKQPWYLKPFVKALQTTLRETRLGQLFFAQVATPEGVKNALSQAYHDKARVTDELVEAILKPGLEPGAVDVFLDFISYSGGPLPEELLPKVNVPVYIGWGEEDPWEPIALGRAYGEFPCVREFRPFPLLGHCPMDEGPDIIDPFIREMVDTLEQERKTAA 394
            PL+ S +DQ  +P  P K+TRP LPTTFW WKR PGE+Y+IRYHQSG+KGPA++LIHGFGGNA+HWAQNVPDLNPHYRV+ALDLLGYGYSDKPSPKGR PTELFNFETW+AMTEAF+ DI+H Q+       EE  GVY+VCNSVGGLVGLQLAVDRP LV+GVMLLNISLRMLHLKKQPW+LKPFVKALQTTLRETRLGQLFFAQVATP+GVKNALSQAYHDK RVTDELVEAILKPGLEPGAVDVFLDFISYSGGPLPEELLP+V+VPVYIGWGEEDPWEPIALGRAYGEFPCVREFRPF  LGHCPMDE P ++DPFIREMVDT+E ERK  A
Sbjct:   48 PLMVSTLDQETLP--PPKSTRPQLPTTFWTWKRGPGEDYRIRYHQSGDKGPAVILIHGFGGNADHWAQNVPDLNPHYRVFALDLLGYGYSDKPSPKGRAPTELFNFETWAAMTEAFVKDIVHEQALAGVSPSEE--GVYVVCNSVGGLVGLQLAVDRPDLVKGVMLLNISLRMLHLKKQPWFLKPFVKALQTTLRETRLGQLFFAQVATPQGVKNALSQAYHDKTRVTDELVEAILKPGLEPGAVDVFLDFISYSGGPLPEELLPRVDVPVYIGWGEEDPWEPIALGRAYGEFPCVREFRPFKGLGHCPMDEDPAVVDPFIREMVDTIEGERKGGA 379
The following BLAST results are available for this feature:
BLAST of NO06G01470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26182.17.100e-16783.63alpha beta fold family protein [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01470NO06G01470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01470.1NO06G01470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01470.1.cds1NO06G01470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01470.1.cds2NO06G01470.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01470.1.cds3NO06G01470.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01470.1.cds4NO06G01470.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01470.1.cds5NO06G01470.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01470.1.cds6NO06G01470.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01470.1 ID=NO06G01470.1|Name=NO06G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1261bp
AGTAGGCTAGGAAAACATGCCGGCCCCGTCACGACCGAACGCGGGGCTGC
TTTCCATGCTTTTTTTGCTATTGGGCTGCTGCGTGCATGCTTTCCTCATT
CCACCGCCTGCGCTGTCACCATCAACATCTTCACGATGTGGATCACTGAT
AAGAAACAGCAGAGGCCCGAGGGGTGTGCAGCGAGTCGGACCTTTGGTAG
CCTCGGTAATGGACCAAGCCATGCCAGGCCTCCCGAAGAAGACGACGCGC
CCAGACTTGCCCACTACATTTTGGATCTGGAAGCGAAGCCCTGGCGAGGA
GTACAAGATTCGATACCACCAAAGTGGAGAAAAGGGCCCTGCGCTTGTTT
TGATTCATGGATTTGGCGGTAATGCCAACCATTGGGCGCAGAATGTACCT
GATCTCAACCCGCACTACCGCGTTTATGCACTGGATCTGCTAGGCTACGG
ATATAGCGACAAGCCCTCTCCCAAGGGCCGGCCCCCCACTGAGCTGTTTA
ATTTTGAGACCTGGTCGGCCATGACTGAGGCATTCATCACAGATATCATC
CACCCACAATCCCCGCTGGATAAACCGGAGGAGGAAGAGAAAGATGGGGT
CTACTTGGTCTGCAACAGTGTCGGGGGGCTGGTCGGGCTCCAGTTGGCAG
TTGACAGGCCTTCCCTAGTCCGCGGCGTCATGCTCCTCAACATTTCCCTC
CGCATGCTCCACCTCAAAAAACAGCCCTGGTACCTCAAGCCCTTCGTCAA
AGCCCTACAAACCACCCTACGGGAGACCAGACTGGGGCAGCTTTTCTTCG
CACAAGTCGCCACCCCCGAGGGCGTGAAGAATGCTCTCTCGCAAGCCTAC
CACGATAAGGCTAGGGTCACCGACGAGCTGGTCGAAGCAATCCTAAAGCC
AGGGTTGGAGCCCGGGGCGGTGGATGTATTTCTTGATTTTATCTCTTATT
CGGGAGGTCCCCTGCCGGAAGAGCTGTTGCCGAAAGTGAATGTTCCTGTT
TACATCGGCTGGGGGGAAGAGGATCCATGGGAGCCCATTGCCTTGGGTCG
TGCCTATGGCGAGTTCCCCTGCGTCCGCGAGTTCAGGCCCTTCCCTCTTC
TTGGCCACTGCCCTATGGACGAAGGCCCTGACATTATCGACCCCTTTATT
AGAGAGATGGTTGATACACTCGAGCAGGAACGAAAGACTGCTGCACTGAA
GTGATTTAAAGATTGTGGGTGGTTTGTGATAATAAAAGGGGAGGAAAAAA
AGCAAAATGCA
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protein sequence of NO06G01470.1

>NO06G01470.1-protein ID=NO06G01470.1-protein|Name=NO06G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MPAPSRPNAGLLSMLFLLLGCCVHAFLIPPPALSPSTSSRCGSLIRNSRG
PRGVQRVGPLVASVMDQAMPGLPKKTTRPDLPTTFWIWKRSPGEEYKIRY
HQSGEKGPALVLIHGFGGNANHWAQNVPDLNPHYRVYALDLLGYGYSDKP
SPKGRPPTELFNFETWSAMTEAFITDIIHPQSPLDKPEEEEKDGVYLVCN
SVGGLVGLQLAVDRPSLVRGVMLLNISLRMLHLKKQPWYLKPFVKALQTT
LRETRLGQLFFAQVATPEGVKNALSQAYHDKARVTDELVEAILKPGLEPG
AVDVFLDFISYSGGPLPEELLPKVNVPVYIGWGEEDPWEPIALGRAYGEF
PCVREFRPFPLLGHCPMDEGPDIIDPFIREMVDTLEQERKTAALK*
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mRNA from alignment at chr6:466767..468923-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01470.1 ID=NO06G01470.1|Name=NO06G01470.1|organism=Nannochloropsis oceanica|type=mRNA|length=2157bp|location=Sequence derived from alignment at chr6:466767..468923- (Nannochloropsis oceanica)
AGTAGGCTAGGAAAACATGCCGGCCCCGTCACGACCGAACGCGGGGCTGC
TTTCCATGCTTTTTTTGCTATTGGGCTGCTGCGTGCATGCTTTCCTCATT
CCACCGCCTGCGCTGTCACCATCAACATCTTCACGATGTGGATCACTGAT
AAGAAACAGCAGAGGCCCGAGGGGTGTGCAGCGAGTCGGACCTTTGGTAG
CCTCGGTAATGGACCAAGGTATATGTCGGGAGTGAAAGAAATCATGTTGT
CATAACATGTTCCGTGTAAAATAGAGTGTCAGGAGGGAGGGGAGGTCGAA
GATGTGGCAACGCGCAGCCCGAGTGTGTGGCATAAGTGCATGTGCTTCTT
TATAAGTGCGTGGATGAAGGTTTCTAGAAATTAACGACTACCATCTAAAT
TCTGCATTTCTCATTCCCCTCCATCAACAAGCCATGCCAGGCCTCCCGAA
GAAGACGACGCGCCCAGACTTGCCCACTACATTTTGGATCTGGAAGCGAA
GCCCTGGCGAGGAGTACAAGATTCGATACCACCAAAGTGGAGAAAAGGGC
CCTGCGCTTGTTTTGATTCATGGTGCGTTGGTTGTGGAAATTGAAGGGAG
AAGACGGGTGGGAGCGGGACAGAAACGGAATGATCGGAGGACTGGAAGGC
AGAGGAGATGCTATTTTGGAATCAAGATGTACACAACATGCACCACATTT
TATGAATCGTCATTTATTCACTCATATACCACTGTATCCTTGACAGGATT
TGGCGGTAATGCCAACCATTGGGCGCAGAATGTACCTGATCTCAACCCGC
ACTACCGCGTTTATGCACTGGATCTGCTAGGTAAGCATGAAGGATAAGAA
CGAGAGGAGAAGGAGAGAGGCAAAGAGCGTCACGTGGGACATGACACAGA
AGATATGGACCGGAAAATGGATCGAGTCGCGTTCCACAGACGGCCGATTA
ATATACTCACTGAGAATTACCTAACCCTCCCTCCCTCCTTCCCTCCCTCC
CTCCTTCCCTCCCTCTCTTCTGCAGGCTACGGATATAGCGACAAGCCCTC
TCCCAAGGGCCGGCCCCCCACTGAGCTGTTTAATTTTGAGACCTGGTCGG
CCATGACTGAGGCATTCATCACAGATATCATCCACCCACAATCCCCGCTG
GATAAACCGGAGGAGGAAGAGAAAGATGGGGTCTACTTGGTCTGCAACAG
TGTCGGGGGGCTGGTCGGGCTCCAGTTGGCAGTTGACAGGCCTTCCCTAG
TCCGCGGCGTCATGCTCCTCAACATTTCCCTCCGCATGCTCCACCTCAAA
AAACAGCCCTGGTACCTCAAGCCCTTCGTCAAAGCCCTACAAACCACCCT
ACGGGAGACCAGACTGGGGCAGCTTTTCTTCGCACAAGTCGCCACCCCCG
AGGGCGTGAAGAATGCTCTCTCGCAAGCCTACCACGATAAGGCTAGGGTC
ACCGACGAGCTGGTCGAAGCAATCCTAAAGCCAGGGTTGGAGCCCGGGGC
GGTGGATGTATTTCTTGATTTTATCTCTTATTCGGGAGGTCCCCTGCCGG
AAGAGCTGTTGCCGAAAGTGAATGTTCCTGTTTACATCGGCTGGGGGGAA
GAGGATCCATGGTATGTTTGAAAGATTAGGAGGAAGCGAGGAGAGGGAGG
AAGCGAGAGAGGGAGAGCACCTTTGGTTTTTCCAAAGACATCATACAGGA
ATGATGTGAAAGGAGGCTGCGACGATATTGTTCACCTCCTCTACCTATTA
TATTCTTTCTTATATTTTTTGTCACAAATAGGGAGCCCATTGCCTTGGGT
CGTGCCTATGGCGAGTTCCCCTGCGTCCGCGAGTTCAGGCCCTTCCCTCT
TCTTGGCCACTGCCCTATGGGTGAGTGAGAATATATGGAGGTGGCTTTAT
TTGGTTATTGTGTCTGTGTGGGTTATGATTTTACTCGTCCACTCACAAAT
CACCCTGTATTCACTTTCATACCTCCTCCTTCCCCATTCCCTCCCACACG
GATGGCATACACAGACGAAGGCCCTGACATTATCGACCCCTTTATTAGAG
AGATGGTTGATACACTCGAGCAGGAACGAAAGACTGCTGCACTGAAGTGA
TTTAAAGATTGTGGGTGGTTTGTGATAATAAAAGGGGAGGAAAAAAAGCA
AAATGCA
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Coding sequence (CDS) from alignment at chr6:466767..468923-

>NO06G01470.1 ID=NO06G01470.1|Name=NO06G01470.1|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at chr6:466767..468923- (Nannochloropsis oceanica)
ATGCCGGCCCCGTCACGACCGAACGCGGGGCTGCTTTCCATGCTTTTTTT
GCTATTGGGCTGCTGCGTGCATGCTTTCCTCATTCCACCGCCTGCGCTGT
CACCATCAACATCTTCACGATGTGGATCACTGATAAGAAACAGCAGAGGC
CCGAGGGGTGTGCAGCGAGTCGGACCTTTGGTAGCCTCGGTAATGGACCA
AGCCATGCCAGGCCTCCCGAAGAAGACGACGCGCCCAGACTTGCCCACTA
CATTTTGGATCTGGAAGCGAAGCCCTGGCGAGGAGTACAAGATTCGATAC
CACCAAAGTGGAGAAAAGGGCCCTGCGCTTGTTTTGATTCATGGATTTGG
CGGTAATGCCAACCATTGGGCGCAGAATGTACCTGATCTCAACCCGCACT
ACCGCGTTTATGCACTGGATCTGCTAGGCTACGGATATAGCGACAAGCCC
TCTCCCAAGGGCCGGCCCCCCACTGAGCTGTTTAATTTTGAGACCTGGTC
GGCCATGACTGAGGCATTCATCACAGATATCATCCACCCACAATCCCCGC
TGGATAAACCGGAGGAGGAAGAGAAAGATGGGGTCTACTTGGTCTGCAAC
AGTGTCGGGGGGCTGGTCGGGCTCCAGTTGGCAGTTGACAGGCCTTCCCT
AGTCCGCGGCGTCATGCTCCTCAACATTTCCCTCCGCATGCTCCACCTCA
AAAAACAGCCCTGGTACCTCAAGCCCTTCGTCAAAGCCCTACAAACCACC
CTACGGGAGACCAGACTGGGGCAGCTTTTCTTCGCACAAGTCGCCACCCC
CGAGGGCGTGAAGAATGCTCTCTCGCAAGCCTACCACGATAAGGCTAGGG
TCACCGACGAGCTGGTCGAAGCAATCCTAAAGCCAGGGTTGGAGCCCGGG
GCGGTGGATGTATTTCTTGATTTTATCTCTTATTCGGGAGGTCCCCTGCC
GGAAGAGCTGTTGCCGAAAGTGAATGTTCCTGTTTACATCGGCTGGGGGG
AAGAGGATCCATGGGAGCCCATTGCCTTGGGTCGTGCCTATGGCGAGTTC
CCCTGCGTCCGCGAGTTCAGGCCCTTCCCTCTTCTTGGCCACTGCCCTAT
GGACGAAGGCCCTGACATTATCGACCCCTTTATTAGAGAGATGGTTGATA
CACTCGAGCAGGAACGAAAGACTGCTGCACTGAAGTGA
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Synonyms
Publications