Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr6 genome chr6:432811..435645 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G01350.1 vs.
Match: XP_005853382.1 (chaperone protein [Nannochloropsis gaditana CCMP526]; EKU22979.1 chaperone protein [Nannochloropsis gaditana CCMP526])
HSP 1 Score: 431.0 bits (1107), Expect = 7.100e-117
Identity = 305/613 (49.76%), Postives = 407/613 (66.39%), Query Frame = 0
Query: 60 PANILRLLSLLALLLLLQP--LHAFRPLLSFSSSSSSSP-STSFASSSQQPRTSLF----ATSKTDYYSILGLAPGATPAEVKRAFRERAKNTHPDASRTTDTTKEFLIIKEAYETLYDGQRRAEFDRRRQVAEVAELAVSVGEILTMDIAVPLARDVALPLIKTAFQGLDQRLVKQFAGPILKTTLEQSASAVENMRQVAQGRAQYFAQMQAAWRAEEIRSLSDQLDVLTLRAKEAQEQARRSAEAVSLSLDREGNARTSLEAAEKVEQDLAQQAQELREESALTLSAFKAMAAEEEDHRQAARKFAKAETKVVGRCKRLEQVVFAADAEVAEAEEVLRRARLRVERAREAKDKAEELFWASQEETKEVRETLEVTKTALAEASAAVVPHRQKWEDIQTKQAALLSSLSAHAKRKHILKQELAAAARKREASHKELELIQKQTASLQKQVMVLAAKIDKKYNEGQSGSGIMSASGASSPVSSSVEG--VGKESGEEL---SKMKPEERKKKQRETFELVFGSVRRQQK-----EKAASAATAAAAPATAESAVAAADLSFMAEKSDGPKDDSSS--GGSSSIAEPMTAEVEQLQRLQQQEQVQKQQQQQQQQ 654
PA + LS L + L P L AF S S P ST S +P T+ F + SKTDYYS+LGL+PGATPAEVKRAFRERAK THPD+SR+ DTT++FL IKEAYETLYD +RRAEFDRRRQ+AEVA+LAVSVGEILT D+AVPLARDVALPLIKTAF+GLDQ ++KQFA PILK TL+QSA+AVE +RQVAQ RAQYF Q+QA+WRAEEIRSL+ QL+ +T +AK+A+ Q + +A VS ++DREG + LEA E + A Q LREES LS F+ AEE + RQAAR+ ET+V+ KRLE ADAEVAEAEEVLRRA+ R+E+AR+A+++A+ L SQEE VRE L T L EA AAV P R+ W++ Q ++A+LL+ L + +K + L+QELA A R+RE + +E +++T QK VM LA +I++KYNE +GSGI S SGA+S ++S G +G+ +G E ++ E RK++QRE F+LVFGS+R++ + +K +A P + + + D +E+ P +++SS ++S A AE E +++++ QQ+ Q
Sbjct: 16 PAVVPFFLSFLLAVFSLLPSVLDAFH---HHPSPPSHVPVSTVSPSQGCKPHTTRFISRLSASKTDYYSVLGLSPGATPAEVKRAFRERAKTTHPDSSRSADTTQDFLAIKEAYETLYDARRRAEFDRRRQLAEVADLAVSVGEILTRDVAVPLARDVALPLIKTAFEGLDQTVIKQFATPILKRTLQQSAAAVEAVRQVAQDRAQYFTQVQASWRAEEIRSLTQQLEEMTAKAKDARAQVKEAAGLVSEAVDREGAIQARLEAVEGASESSAAAMQGLREESRRALSDFQERVAEEAERRQAARRLKTEETRVLAANKRLEAFALTADAEVAEAEEVLRRAQTRMEKARQARERAQGLLKTSQEEADGVRERLSQTSLDLQEALAAVAPSRRVWQEAQAREASLLAQLKSQSKEEAALRQELAMAVRRREMARREFLAAERRTGLFQKGVMELAGQIERKYNEALAGSGITSTSGATSAAAASEAGQDLGRRTGPETGVGKEVSGEARKRRQREAFDLVFGSIRKRSRGPTRGKKTDTAVEEGVGPGSKDDPATSGDWD-SSEEPGEPLEEASSVQAPAASTAAAPRAEPENPVEGGGAQEMERDPAQQELQ 624
The following BLAST results are available for this feature:
BLAST of NO06G01350.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 Expect = 7.10e-117 / Id = 49.76 Sequence XP_005853382.1
Match Name E-value Identity Description
XP_005853382.1 7.100e-117 49.76 chaperone protein [Nannochloropsis gaditana CCMP52... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO06G01350.1 ID=NO06G01350.1|Name=NO06G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2154bp ATGCTGGATTGGTCTGATTCGACAACACCTTTGGATCCCCACCACAACCT TGCTAGTGAGCAGCACGTCTCCTCGGCTGGAAAGAGACCTACCCTTGGGT CTGGAGATAGCTTTAGTGTGGCGTTTGATCGACAAACGGTGGCTGCCGTC ATGACAGTCCCATCCCTCTGGCGGCATCCAGCCAACATCCTCCGCCTCCT TTCCCTCCTCGCCCTCTTGCTTCTTCTCCAACCTCTCCACGCCTTCCGTC CTCTCCTCTCCTTCTCTTCTTCGTCTTCTTCATCCCCATCAACATCATTC GCATCATCATCACAACAACCACGCACCAGCCTCTTCGCCACAAGCAAAAC TGACTACTACTCCATCCTCGGCCTTGCCCCTGGAGCAACTCCCGCAGAGG TCAAAAGAGCCTTTCGCGAACGCGCCAAGAACACCCACCCGGATGCCAGT CGCACCACTGACACCACCAAAGAATTTTTAATTATCAAAGAGGCGTATGA AACCTTATATGATGGTCAAAGAAGGGCTGAGTTTGATCGGAGGAGGCAGG TGGCAGAGGTGGCTGAGTTGGCGGTGAGCGTGGGAGAAATTCTGACTATG GACATTGCGGTGCCTCTAGCCCGCGACGTCGCCCTCCCCCTCATCAAGAC TGCCTTTCAGGGGCTTGACCAAAGATTGGTTAAACAATTCGCCGGTCCGA TACTGAAAACGACTTTGGAGCAGTCGGCCTCCGCAGTTGAAAACATGCGT CAAGTTGCCCAAGGCCGCGCCCAGTATTTCGCGCAAATGCAAGCTGCCTG GCGGGCTGAGGAGATCCGTTCCCTCTCGGATCAACTAGACGTGCTGACCC TGCGTGCCAAAGAGGCTCAAGAACAGGCACGAAGGTCCGCTGAGGCAGTC TCTCTCTCCCTCGATCGAGAAGGGAATGCTAGGACGTCGTTGGAGGCAGC AGAGAAGGTAGAGCAAGACCTGGCGCAGCAAGCTCAAGAATTGCGCGAAG AGTCTGCTTTGACATTGTCAGCGTTCAAGGCTATGGCGGCGGAAGAGGAG GACCATCGTCAGGCAGCGAGAAAATTTGCGAAAGCGGAAACAAAGGTTGT AGGGCGTTGTAAGCGATTGGAGCAAGTTGTGTTTGCCGCGGACGCCGAGG TGGCAGAGGCGGAGGAGGTCCTGCGACGGGCCCGCCTACGGGTAGAACGA GCCAGGGAGGCAAAGGACAAGGCGGAAGAATTGTTTTGGGCCAGTCAGGA GGAAACAAAGGAAGTACGAGAAACACTCGAGGTCACAAAGACTGCCTTGG CAGAAGCCAGTGCAGCTGTTGTCCCCCATCGACAGAAATGGGAAGACATC CAGACCAAGCAGGCTGCCCTCCTTTCCTCTCTATCGGCCCATGCCAAACG AAAACACATTCTCAAGCAAGAGCTGGCAGCGGCCGCTCGAAAGCGCGAAG CGTCTCACAAGGAATTGGAACTCATTCAAAAACAGACGGCGAGTCTCCAG AAGCAAGTGATGGTTTTAGCCGCGAAGATAGACAAGAAATATAATGAGGG GCAGTCCGGTTCGGGGATTATGAGTGCCTCTGGGGCGAGCTCCCCTGTGT CGTCATCGGTAGAGGGGGTGGGAAAGGAGAGTGGAGAGGAGTTATCTAAG ATGAAGCCAGAGGAGCGGAAGAAGAAGCAGAGGGAGACATTTGAGCTGGT CTTTGGGAGTGTGAGGAGGCAGCAGAAAGAAAAAGCGGCATCGGCAGCGA CAGCGGCAGCAGCTCCAGCGACGGCAGAATCAGCAGTAGCAGCAGCAGAT CTTTCGTTTATGGCTGAGAAAAGTGATGGCCCCAAAGACGATAGCAGCAG TGGCGGCAGTAGCAGCATCGCGGAGCCCATGACCGCTGAAGTGGAGCAGC TGCAGCGACTCCAGCAACAGGAACAGGTGCAGAAGCAGCAGCAGCAGCAG CAGCAGCAGCAGCAACAAGACGCGCTTGATGCCGTTTTCACTGCCTCGGC TGCTGAATCCTTGTCCATCACTACCTCTCACACAATCGTCAACGCCGGTG CTGCTGACGTCGAGACGAAGCTGAAGCGGAAGGAGGAGAGGCTGGAAAAG CAGATTGCTGAGAGAGAAGATTCATTGAGCCGGCTGCAACGTGTCAGAAT ATGA back to top protein sequence of NO06G01350.1
>NO06G01350.1-protein ID=NO06G01350.1-protein|Name=NO06G01350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=718bp MLDWSDSTTPLDPHHNLASEQHVSSAGKRPTLGSGDSFSVAFDRQTVAAV MTVPSLWRHPANILRLLSLLALLLLLQPLHAFRPLLSFSSSSSSSPSTSF ASSSQQPRTSLFATSKTDYYSILGLAPGATPAEVKRAFRERAKNTHPDAS RTTDTTKEFLIIKEAYETLYDGQRRAEFDRRRQVAEVAELAVSVGEILTM DIAVPLARDVALPLIKTAFQGLDQRLVKQFAGPILKTTLEQSASAVENMR QVAQGRAQYFAQMQAAWRAEEIRSLSDQLDVLTLRAKEAQEQARRSAEAV SLSLDREGNARTSLEAAEKVEQDLAQQAQELREESALTLSAFKAMAAEEE DHRQAARKFAKAETKVVGRCKRLEQVVFAADAEVAEAEEVLRRARLRVER AREAKDKAEELFWASQEETKEVRETLEVTKTALAEASAAVVPHRQKWEDI QTKQAALLSSLSAHAKRKHILKQELAAAARKREASHKELELIQKQTASLQ KQVMVLAAKIDKKYNEGQSGSGIMSASGASSPVSSSVEGVGKESGEELSK MKPEERKKKQRETFELVFGSVRRQQKEKAASAATAAAAPATAESAVAAAD LSFMAEKSDGPKDDSSSGGSSSIAEPMTAEVEQLQRLQQQEQVQKQQQQQ QQQQQQDALDAVFTASAAESLSITTSHTIVNAGAADVETKLKRKEERLEK QIAEREDSLSRLQRVRI* back to top mRNA from alignment at chr6:432811..435645+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01350.1 ID=NO06G01350.1|Name=NO06G01350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2835bp|location=Sequence derived from alignment at chr6:432811..435645+ (Nannochloropsis oceanica)ATGCTGGATTGGTCTGATTCGACAACACCTTTGGATCCCCACCACAACCT
TGCTAGTGAGCAGCACGTCTCCTCGGCT GTGTTTCGCCTTCTCTAGTGGA
CCGTGTCTCACCCTTTCGCTCCCCATCCAAACACACCCACGCGCGCAGAC
TAAGGCCATATTTAGTATCCTGCTGCGTCATAGGGAAAGAGACCTACCCT
TGGGTCTGGAGATAGCTTTAGTGTGGCGTTTGATCG GTACGTATCGAAGG
AATAGGGGGAATGACTTGCTGCCGCGGCCAAATGGCTGGGCTTATTTGGA
TGCTTGTCGATGTGGGACAGTGAGCCACCTAATCTCGCACCACATTAATT
TCTTATATCACTCTGTGTGTGATTTCTTGATCTCGACACGTGCGACGTCA
TGTGCGGAAGATCGAGGTTCATTGTGCATGAAACGCCACAAACAAGCTTC
TCTCATCTGCCTTCCCAATAAAAACAAAGCCTACACAGACCGGCGCACGC
ATACCTATGCCTTATCTTCCTTTATTCCTCTTTTCAATGTTCAACAGACA
AACGGTGGCTGCCGTCATGACAGTCCCATCCCTCTGGCGGCATCCAGCCA
ACATCCTCCGCCTCCTTTCCCTCCTCGCCCTCTTGCTTCTTCTCCAACCT
CTCCACGCCTTCCGTCCTCTCCTCTCCTTCTCTTCTTCGTCTTCTTCATC
CCCATCAACATCATTCGCATCATCATCACAACAACCACGCACCAGCCTCT
TCGCCACAAGCAAAACTGACTACTACTCCATCCTCGGCCTTGCCCCTGGA
GCAACTCCCGCAGAGGTCAAAAGAGCCTTTCGCGAACGCGCCAAGAACAC
CCACCCGGATGCCAGTCGCACCACTGACACCACCAAAGAATTTTTAATTA
TCAAAGAGGCGTATGAAACCTTATATGATGGTCAAAGAAGGGCTGAGTTT
GATCGGAGGAGGCAGGTGGCAGAGGTGGCTGAGTTGGCGGTGAGCGTGGG
AGAAATTCTGACTATGGACATTGCGGTGCCTCTAG GTAAGAGGCAAAAAG
GAGAGTGAAAGGGTGCATAATTGCACAAGGATATAGAGTTTGACGGCTTC
AACGAATTTATCAACCATGTTCTTTAACTTCTGCCTCGCCTTCCCTCCTT
CCCGCCGATCCTTAAAATACAGCCCGCGACGTCGCCCTCCCCCTCATCAA
GACTGCCTTTCAGGGGCTTGACCAAAGATTGGTTAAACAATTCGCCGGTC
CGATACTGAAAACGACTTTGGAGCAGTCGGCCTCCGCAGTTGAAAACATG
CGTCAAG GTAAGCGGGCTGACTTAAGGAAGGTGAAGGAGGGGACGAGGAG
GGCGAGGTCGAGGGTGTGGAGCGGATCCACCATCCATTCCTTTCTCATCT
CTTGCTTATTCCCTCCCTCGCGGTTCTTTGCACAGTTGCCCAAGGCCGCG
CCCAGTATTTCGCGCAAATGCAAGCTGCCTGGCGGGCTGAGGAGATCCGT
TCCCTCTCGGATCAACTAGACGTGCTGACCCTGCGTGCCAAAGAGGCTCA
AGAACAGGCACGAAGGTCCGCTGAGGCAGTCTCTCTCTCCCTCGATCGAG
AAGGGAATGCTAGGACGTCGTTGGAGGCAGCAGAGAAGGTAGAGCAAGAC
CTGGCGCAGCAAGCTCAAGAATTGCGCGAAGAGTCTGCTTTGACATTGTC
AGCGTTCAAGGCTATGGCGGCGGAAGAGGAGGACCATCGTCAGGCAGCGA
GAAAATTTGCGAAAGCGGAAACAAAGGTTGTAGGGCGTTGTAAGCGATTG
GAGCAAGTTGTGTTTGCCGCGGACGCCGAGGTGGCAGAGGCGGAGGAGGT
CCTGCGACGGGCCCGCCTACGGGTAGAACGAGCCAGGGAGGCAAAGGACA
AGGCGGAAGAATTGTTTTGGGCCAGTCAGGAGGAAACAAAGGAAGTACGA
GAAACACTCGAGGTCACAAAGACTGCCTTGGCAGAAGCCAGTGCAGCTGT
TGTCCCCCATCGACAGAAATGGGAAGACATCCAGACCAAGCAGGCTGCCC
TCCTTTCCTCTCTATCGGCCCATGCCAAACGAAAACACATTCTCAAGCAA
GAGCTGGCAGCGGCCGCTCGAAAGCGCGAAGCGTCTCACAAGGAATTGGA
ACTCATTCAAAAACAGACGGCGAGTCTCCAGAAGCAAGTGATGGTTTTAG
CCGCGAAGATAGACAAGAAATATAATGAGGGGCAGTCCGGTTCGGGGATT
ATGAGTGCCTCTGGGGCGAGCTCCCCTGTGTCGTCATCGGTAGAGGGGGT
GGGAAAGGAGAGTGGAGAGGAGTTATCTAAGATGAAGCCAGAGGAGCGGA
AGAAGAAGCAGAGGGAGACATTTGAGCTGGTCTTTGGGAGTGTGAGGAGG
CAGCAGAAAGAAAAAGCGGCATCGGCAGCGACAGCGGCAGCAGCTCCAGC
GACGGCAGAATCAGCAGTAGCAGCAGCAGATCTTTCGTTTATGGCTGAGA
AAAGTGATGGCCCCAAAGACGATAGCAGCAGTGGCGGCAGTAGCAGCATC
GCGGAGCCCATGACCGCTGAAGTGGAGCAGCTGCAGCGACTCCAGCAACA
GGAACAGGTGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAAG
ACGCGCTTGATGCCGTTTTCACTGCCTCGGCTGCTGAATCCTTGTCCATC
ACTACCTCTCACACAATCGTCAACGCCGGTGCTGCTGACGTCGAGACGAA
GCTGAAGCGGAAGGAGGAGAGGCTGGAAAAGCAGATTGCTGAGAGAGAAG
ATTCATTGAGCCGGCTGCAACGTGTCAGAATATGA back to top Coding sequence (CDS) from alignment at chr6:432811..435645+
>NO06G01350.1 ID=NO06G01350.1|Name=NO06G01350.1|organism=Nannochloropsis oceanica|type=CDS|length=2154bp|location=Sequence derived from alignment at chr6:432811..435645+ (Nannochloropsis oceanica) ATGCTGGATTGGTCTGATTCGACAACACCTTTGGATCCCCACCACAACCT TGCTAGTGAGCAGCACGTCTCCTCGGCTGGAAAGAGACCTACCCTTGGGT CTGGAGATAGCTTTAGTGTGGCGTTTGATCGACAAACGGTGGCTGCCGTC ATGACAGTCCCATCCCTCTGGCGGCATCCAGCCAACATCCTCCGCCTCCT TTCCCTCCTCGCCCTCTTGCTTCTTCTCCAACCTCTCCACGCCTTCCGTC CTCTCCTCTCCTTCTCTTCTTCGTCTTCTTCATCCCCATCAACATCATTC GCATCATCATCACAACAACCACGCACCAGCCTCTTCGCCACAAGCAAAAC TGACTACTACTCCATCCTCGGCCTTGCCCCTGGAGCAACTCCCGCAGAGG TCAAAAGAGCCTTTCGCGAACGCGCCAAGAACACCCACCCGGATGCCAGT CGCACCACTGACACCACCAAAGAATTTTTAATTATCAAAGAGGCGTATGA AACCTTATATGATGGTCAAAGAAGGGCTGAGTTTGATCGGAGGAGGCAGG TGGCAGAGGTGGCTGAGTTGGCGGTGAGCGTGGGAGAAATTCTGACTATG GACATTGCGGTGCCTCTAGCCCGCGACGTCGCCCTCCCCCTCATCAAGAC TGCCTTTCAGGGGCTTGACCAAAGATTGGTTAAACAATTCGCCGGTCCGA TACTGAAAACGACTTTGGAGCAGTCGGCCTCCGCAGTTGAAAACATGCGT CAAGTTGCCCAAGGCCGCGCCCAGTATTTCGCGCAAATGCAAGCTGCCTG GCGGGCTGAGGAGATCCGTTCCCTCTCGGATCAACTAGACGTGCTGACCC TGCGTGCCAAAGAGGCTCAAGAACAGGCACGAAGGTCCGCTGAGGCAGTC TCTCTCTCCCTCGATCGAGAAGGGAATGCTAGGACGTCGTTGGAGGCAGC AGAGAAGGTAGAGCAAGACCTGGCGCAGCAAGCTCAAGAATTGCGCGAAG AGTCTGCTTTGACATTGTCAGCGTTCAAGGCTATGGCGGCGGAAGAGGAG GACCATCGTCAGGCAGCGAGAAAATTTGCGAAAGCGGAAACAAAGGTTGT AGGGCGTTGTAAGCGATTGGAGCAAGTTGTGTTTGCCGCGGACGCCGAGG TGGCAGAGGCGGAGGAGGTCCTGCGACGGGCCCGCCTACGGGTAGAACGA GCCAGGGAGGCAAAGGACAAGGCGGAAGAATTGTTTTGGGCCAGTCAGGA GGAAACAAAGGAAGTACGAGAAACACTCGAGGTCACAAAGACTGCCTTGG CAGAAGCCAGTGCAGCTGTTGTCCCCCATCGACAGAAATGGGAAGACATC CAGACCAAGCAGGCTGCCCTCCTTTCCTCTCTATCGGCCCATGCCAAACG AAAACACATTCTCAAGCAAGAGCTGGCAGCGGCCGCTCGAAAGCGCGAAG CGTCTCACAAGGAATTGGAACTCATTCAAAAACAGACGGCGAGTCTCCAG AAGCAAGTGATGGTTTTAGCCGCGAAGATAGACAAGAAATATAATGAGGG GCAGTCCGGTTCGGGGATTATGAGTGCCTCTGGGGCGAGCTCCCCTGTGT CGTCATCGGTAGAGGGGGTGGGAAAGGAGAGTGGAGAGGAGTTATCTAAG ATGAAGCCAGAGGAGCGGAAGAAGAAGCAGAGGGAGACATTTGAGCTGGT CTTTGGGAGTGTGAGGAGGCAGCAGAAAGAAAAAGCGGCATCGGCAGCGA CAGCGGCAGCAGCTCCAGCGACGGCAGAATCAGCAGTAGCAGCAGCAGAT CTTTCGTTTATGGCTGAGAAAAGTGATGGCCCCAAAGACGATAGCAGCAG TGGCGGCAGTAGCAGCATCGCGGAGCCCATGACCGCTGAAGTGGAGCAGC TGCAGCGACTCCAGCAACAGGAACAGGTGCAGAAGCAGCAGCAGCAGCAG CAGCAGCAGCAGCAACAAGACGCGCTTGATGCCGTTTTCACTGCCTCGGC TGCTGAATCCTTGTCCATCACTACCTCTCACACAATCGTCAACGCCGGTG CTGCTGACGTCGAGACGAAGCTGAAGCGGAAGGAGGAGAGGCTGGAAAAG CAGATTGCTGAGAGAGAAGATTCATTGAGCCGGCTGCAACGTGTCAGAAT ATGA back to top