Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr6 genome chr6:406549..412855 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G01270.1 vs.
Match: EWM26167.1 (hypothetical protein Naga_100121g4 [Nannochloropsis gaditana])
HSP 1 Score: 607.1 bits (1564), Expect = 2.000e-169
Identity = 475/1283 (37.02%), Postives = 673/1283 (52.46%), Query Frame = 0
Query: 655 MRLVLRWGHQSEEGDREGCRETEMMTSAPVLLESLFERSLAVRASSRREETREEVMAGAEEGLNPGMASVLVFRMFETSTSR------SSTPGIISDADSATGGLRRRSWDVLLTEDFYCRLTPALVMGLAAFNFLPSSIPVSTTSVSSFSTSSSSLSNPPLHARIQLRAKLIKVSFACVNPMENSTSTSTSTSRIVRTQRQRPDRSDWLIQVDNLLIEQHQQQRLGLREGSSSSSSLKLARFSLGSNFFHKEALAPATSAEAALPVAAATLTRRGGGGHFAPLLGAENVTLSIVARVQPSASSSSSVSSSSSSSSSMDVH----VSFPGGMVLSVLPAHMEMCVAIISFFRTKDGDALETSASRLAIRHPLPSFVQMACSSASIEYSRTGSSSSSSSSSSSGGGDGREGVELAGDTTETMAVLMESFSVRNLTINSGATTTTSSSSSNNSSSSSPAKPNNCSTLIIQTPQVSFQTFTAYKDGRKINISAPQHLSLHLSPLKIYALKNAAIEIMRVIAALPSSPAAAGASTQEEMFVRAEMMTVMVDLPWLDGELPRVVFKCRKGEWIALCQNDNRASSLPLPSTKELTQNRLTVAHMTAVGEVPRRPVPVTRTIITSSLLARLWMERHDTQRYACLASFLSPRESDHLSAALCCNRAHFVTARAKEEDVVLVPLLIPEEEDVGEVDGGTEGGGFFEMKWQTRRKTRTMVHMEVGFAPCQFMLYFPFLYALIRLGTLATTSSASTRAATALAKKERKERRQMRRQAGEEGKVEEEEEESPR-PTLLLKARKSQVLVLGGNIQDARFALLFDLDKFVFWRRSERTGGEGGAGLMVT----PTEIRRMGFRTHMGLWRFDSGQGLELRQAWTLIERADFEVQKEGG---REGGREDEARVVHISPVALTVGRLELAVLWRVVGVFGRSVTQAPPVEGSDKRTNYTAAAISAAGESSVRSTPAVACAEEEE-KESPNMRLVCPYLYLSFKTPRFSPASSSFTPGSWTGAHSSLSMAHAVDTDTLAFHLNLETCHIQIGTSSGRVDVSEVIVKDCRSTHPSLSSPRRLPSRSQHQQQSSSSPPPSDNCQQQVPQQKQQQQQQQQRGLALHPRPEFISSFSGTSALGLTWHKSLGGSTADISLQLQPSTLHLDPHSLALLSALGGFVNLNLELVAAKDAEEAQATISAAGGCGGGGETAVSGKRNVPLSLFLLRRTETVKLLTDHLKVVLVGVPPHPIHSAAAATAAVVPASLEIEVEQLFSSLRTAGYSAEQYLNLVQVRAHIISYE 1919
M ++L+WG E EG SAP+LLE+LF+R+L V+AS+R ++ E+V+ GAE GL P ++VLV R F+ S P D ++ +R DVL +E CRLTPA+V+GLA F S P+ +SVS + P +R ++V+FAC P N QRP+ L+Q+++L ++ QQ +S S ++AR ++G K +TSA R G L A+N++ S+ + ++ + + SS ++H +S P G+ LSV+PA+ +AI +F DG+AL+ + + L + HP SFV M C + +T + S S E D+ + + ++M+ FSV ++ +S + P S LI+QTP V +T T+ ++GR +S PQ + ++SPL I+AL+ AA+EI R++AALPSSP GAST+E+M + + T+M+D+PWL GELPR VF CR GEW+ N+ RA +L N L +AH+ G VP P R +S + RH L FL P E + L AAL +A ++ + E++V+VPLL+P+E+ + V F E+ WQ+ RKTR MVHMEV F PCQ +LY PFLYAL+RLGTLA+ + + A ++R+ER K ++EE+ +P PTLLL A+ S+VL+LGG +QDARF + DLD V WRR E G G VT P EIRR+GF MG WR D+ QGLEL AW LIER DFEV+ G +E + AR V +SP+ALT+G LE+AVLWRVVGVFGR+VT+AP V+ S N+ A + ++ + A+++ KE PN+RL CPYLY+SFK+PR S S F + +++ AVD + +AFHL LE C + + TH RL ++ + S RGLAL PRP+F+S FSGTSAL WHK G+ +++ +QLQPS L+LDPHS + L +LGGF+NL+LE++AAKDA EA+A A A R LS FLL RTET KL+TDHLKVVL S+ + A ++P +LEIE +Q+ +SLRTAGY+ + YLN+VQ R I+ E
Sbjct: 1 MPVLLQWGETRESEKEEG-----PTASAPILLEALFKRTLLVKASNRSDDYVEKVLQGAEGGLRPLRSTVLVVRYFQERHSELRGRDMGDRPWGGGDRETGEADSQRIVVDVLFSEALRCRLTPAVVLGLACF----VSPPLRASSVSPAPNAYR-----PWQTTCNIRIGSLQVAFACNGPGGN----------------QRPE---CLLQLEDLDLKHCQQGP------TSHHRSCRMARLAIGM----KNVTMDSTSAS------------RLGTEDVLTLFEAKNMSFSLESSIKQI--HQRGIWNGRKSSLDEEMHQCGKISMPLGVSLSVIPAYWRFGLAISTFLCRNDGNALDATIAGLPLVHPPNSFVCMTCECLEVAMKKTAIAPISGSV---------EDDTPTRDSRDMLEMVMKEFSVSQKNSHACRAVIDKEKTSGPCIKTFPETTKG-SFLILQTPVVWVKTITSVQEGRDTEMSVPQQFTFYVSPLNIWALRTAALEITRLMAALPSSPRIVGASTREKMRLCVDTFTIMIDMPWLAGELPRAVFACRGGEWVV--SNEGRAEAL--------IHNHLGIAHVRVEGHVP--PHNAARGSESS------FSNRHLEFISNKLLPFLLPVEEESLKAAL--QQARHQGSKFEGEEMVVVPLLVPDEDCMVRV----AKKAFVEISWQSERKTRAMVHMEVAFEPCQCILYCPFLYALLRLGTLASKPMTKSSSLHAGKIEDREERM---------AKADDEEDVAPPCPTLLLTAQTSRVLLLGGTLQDARFGVSIDLDNLVLWRRGESGNGRPGEETEVTAPAMPMEIRRLGFGAQMGQWRVDANQGLELVHAWNLIERVDFEVEGGKGAFIKEDVSRETARTVLVSPLALTLGTLEMAVLWRVVGVFGRNVTRAPLVQCSG---NHAIACREYGNDGHASTSARLRNADKDVGKELPNLRLACPYLYVSFKSPRHS--SRDFC----AEMPPTRTISQAVDMEKVAFHLKLEDCTLSL------------------GTHGGHFDVARLVIENRRATHTGDS-------------------LTHHRGLALLPRPDFLSLFSGTSALTFAWHKPANGNASEMIIQLQPSILYLDPHSCSTLRSLGGFMNLDLEMLAAKDATEARAVAVA----------AARRSRGTRLSSFLLGRTETTKLVTDHLKVVL---------SSDSRHAGLLP-TLEIEADQVLASLRTAGYNVDHYLNMVQTRISILMTE 1117
The following BLAST results are available for this feature:
BLAST of NO06G01270.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 3500 4000 4500 5000 5500 Expect = 2.00e-169 / Id = 37.02 Sequence EWM26167.1
Match Name E-value Identity Description
EWM26167.1 2.000e-169 37.02 hypothetical protein Naga_100121g4 [Nannochloropsi... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO06G01270.1 ID=NO06G01270.1|Name=NO06G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=5823bp back to top protein sequence of NO06G01270.1
>NO06G01270.1-protein ID=NO06G01270.1-protein|Name=NO06G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1941bp back to top mRNA from alignment at chr6:406549..412855-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01270.1 ID=NO06G01270.1|Name=NO06G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=6307bp|location=Sequence derived from alignment at chr6:406549..412855- (Nannochloropsis oceanica)ATGAGAGCCTCGTCTTTAATTGTGTTGGCCACAACGTCCGGCAGTCGGCG
CGGGCGCGCCTCGGATAGCCCT GTAAGTGGGGACAGGAGCGAGTGTGGTT
GAATGTTCGGAGTAAGTGAGGGCGTGGTGTCTATGCCTGCAATGAGAAGA
TGAAGTCACAAGCAAGGTAGTGAGTGCATTGCTGTGTCGGTTGCCCTCGC
CCATTTCTCGCCCAGCCACGAAGTGATCCTTGACCGTCTCACCACAGGCC
CTGCGATCGCCCTATACTCCTGCGATAATATGCACCAACATCCTAGACAA
CCAAGAAAACGTGTTGGAGTACTTGAAAATCAAGAGGTGCTTGCTGCTCT
TGGCTTGTTTTCCCCCTCGGCTAATCCGCGCTACAATGGGCCATCTTCAT
CATCACAATTCTAGGCGAATTCATTCACACCCCTTCTCGAGTGGTCAACC
CTAGTTCCCAGCACCGAACTCAATTACCATCCACATCCCTGCACACACAG
GTGCACACGTACCATACTGTCAAGGCACTGGGTCTAGTCCTCCACGTCGC
CATGGACTTCACGCAGGGCATCCGGAGTTACCTGACGAGGCAGATCCAGG
ACTCTTTGAATCATTTGATTGAGGGCGGGGTTGTGGCTGGGATCACAGGG
GATGTGGTGCTCGAGGAGTTGTCCCTGCGAAAAAATCTGCTGCGCAACCT
GCTCAACCTTCCCTTGGAGTATGATATTGCCCGAGGCACGGCCAAAGAAT
TGCGGGTTTCCATCCCATGGGCCCGCATTATCGCTCAGTCCCAGCCCGTG
GTGCAGGTGACTTTAAAGACGGTGGAGATCCTCGTCAAGCGCTCTTCTTC
TTCGAGACATGACAGTCCTAGAGATAAAGTAGACAATCCCCATCAACCAC
CTTCCTTGTCGTCTTTACAGCCGCACCACGAATTGCAAAAATTACCCGTC
AAGCTTTCTCCCGTCCCACCTGCCACGGCTCCCCCCTCCAAGGGCCGACG
AGGTAGCGCTGTAATGCCCGAAGAGCAGGAAGGCACCGCCGTCGGGGGGG
GAGATAAACCCAAAGGCTGGCTTCATTCCCTGGGGAAGAAGCTTTTGATG
AACGTGATGTTGCGGGTGGACAACTTGGCGATTCGCTACGAGGAGGAGGA
TGGGAGTACGGTCGCGACTGCGTACATATGCAATGTCCTTTTGAATTCTG
CTGATCCAGGGCAGGACTGGCAGCCGGCTTACAACGAATGTGACCCCCCT
GCTAGCCCTTGGCTATTCAAGGCCGTGCACCTCGACGATGTCACAGTCTG
TTTGGATGGACGTGGGCCGAGAAGCAGCAGCAGCAGCAGTTGCAGCGGCG
GCAGCAGTAGCAGCAAGCGGCGGCATGAAGCCCCTCTTGTAGACCGTGCC
TCGTTCAAGCTGAATATGGCCCTAGATGTCCGCGACATTTTCCAATTCTG
GGGCACGGAAGGGCCACCCCTCCCTCCCTCGGCCTCTCCTTCGCCTGCTA
CAGCAAGTGCGTCGTATTTTCGCACTGATTTTTTTTCCCCCATGTCAATG
GATGGCCTTTTCCTCGACAGTCCTTACACCGTTTCTTCTCCTCAGCAGAC
CGAGCAGCGACAACAACTGCAACAGCTGCAGCAAGGGGAGGAAGATGAGC
AAGAATGGAGTTTGTATGACGGGTACTTGCCGCCGACGTTTGGGGCACTA
TGTCCGGTACTGGCTTGTCAGGAGGAATGGGGGGAGGGAGGAAGGGAGGG
CGCCTCTCGTGTACCTCGGCCAACATTGGGGCCGTGGGAGGATGGATCGA
ATGCATGGGTTCCTTATGGAAAGGAGGATGAAGGGGGGGAGATCCGGGGG
GGGGAGGGAGAAAGAGACGCCGACGATTTGATAAGAAG GTGCATGCTGCA
GTGGTGCTGGACGTGGAGTGTGCTCGCTTGCGACTGTCATTCAGTGAGCA
TCAAGCAATACTGCTGCAGGCACTACTGTCTCGAGCAGGGCAGAATGTGA
AGGAGGGGAAGAAAGGAGGAGGAGGGAGTAACGTGTCTCCGGTTGATAAG
CAGCAGCAGCCGCAGCAGGAGAAGCCTCCCGTAAATTGTTGGTATGATCG
TCTGCATGTGACCAGCTTTCGACTTCACACCCTTTCCCTTCGTCTGGTTC
GGCACGGCAGTACCGATAGTAGCAGCAGAATAAGAAGCATTAGTAGCAGC
GGCAGTAGTGCTGTTCCCCAACATGCTTCGTGGGTATTCATGCGACTGCG
GGCTCGAAAGTTGTTTTTGGATCGGCAGGAGCTTTGTGGAGCAGGGATGG
GAGGAGCTACAGCAGCAGCTGTACATACTGTAGATGTTCGTGGCGCGTTG
GGTGCTTTGGAGGTGGCATACGCAGGGGAGGATGTATATGAGGAGGAGGA
GGAGGGATGGGAAGGAGAAAGGGGGATCTTATCATCCTGCATGTCGATGA
GATTGGTGCTGCGGTGGGGCCATCAAAGCGAAGAGGGAGACAGGGAGGGT
TGTAGGGAGACAGAGATGATGACCTCAGCGCCCGTCTTATTGGAAAGTTT
GTTTGAGAGGAGCTTGGCTGTGAGGGCGTCCTCCAGGAGGGAGGAAACGA
GGGAGGAAGTGATGGCGGGCGCGGAGGAAGGGTTGAACCCAGGCATGGCG
TCGGTGCTGGTGTTTAGGATGTTTGAAACTAGCACGAGCAGGAGCAGTAC
TCCTGGTATTATTTCTGATGCTGATTCTGCAACTGGAGGTCTCAGAAGGA
GATCGTGGGACGTGTTACTCACGGAGGATTTCTACTGTCGCCTGACCCCG
GCCCTGGTGATGGGGCTGGCAGCCTTCAACTTCCTCCCTTCCTCCATACC
CGTTTCTACCACCTCAGTCTCTTCATTTTCTACTTCCTCCTCCTCTCTTT
CGAATCCGCCTTTGCATGCCCGAATCCAGCTTCGAGCGAAGCTAATCAAA
GTCTCTTTTGCCTGCGTCAACCCCATGGAAAATAGTACCAGCACCAGCAC
CAGCACCAGCAGAATTGTTAGAACACAACGGCAGCGACCCGATCGATCCG
ATTGGCTCATCCAAGTCGACAATCTACTGATCGAGCAACACCAGCAGCAA
CGACTAGGATTACGGGAAGGGTCTTCCTCCTCTTCCTCCTTGAAGCTGGC
GAGGTTCTCTTTAGGTTCCAATTTCTTCCACAAGGAAGCACTAGCACCAG
CAACATCAGCAGAAGCAGCCTTGCCTGTCGCTGCTGCCACTCTCACTAGA
AGGGGGGGCGGAGGTCACTTTGCTCCTCTTCTAGGTGCTGAGAATGTGAC
CTTGTCAATCGTAGCACGTGTGCAACCATCGGCAAGCAGCAGCAGCAGCG
TCAGCAGCAGCAGCAGTAGCAGCAGCAGTATGGATGTGCATGTCAGCTTT
CCTGGAGGAATGGTGTTATCAGTGCTCCCTGCTCACATGGAAATGTGTGT
GGCTATCATCTCTTTTTTCCGCACGAAAGACGGGGACGCTTTAGAAACGT
CTGCGAGCAGACTTGCCATACGTCACCCCCTTCCTTCCTTCGTTCAAATG
GCGTGCAGCAGTGCCTCCATTGAATACAGCAGGACAGGCAGCAGCAGCAG
CAGCAGTAGCAGCAGCAGCAGCGGCGGCGGCGACGGGAGAGAGGGTGTGG
AATTGGCTGGGGACACCACAGAGACGATGGCCGTGCTCATGGAAAGCTTC
TCCGTCCGGAATCTCACCATTAATAGCGGCGCCACCACCACCACTAGCAG
CAGCAGCAGCAATAACAGCAGCAGCAGCAGTCCCGCAAAACCCAACAACT
GCAGCACGCTCATCATCCAAACCCCCCAAGTCTCCTTCCAGACGTTTACC
GCCTACAAGGACGGCCGCAAAATAAACATCTCTGCCCCCCAACACCTCTC
TCTCCACTTAAGCCCTTTGAAAATCTACGCGCTCAAAAATGCCGCCATAG
AGATAATGAGAGTTATAGCAGCGCTACCCTCTTCTCCCGCAGCAGCAGGA
GCGAGCACGCAGGAAGAGATGTTTGTAAGGGCAGAAATGATGACGGTAAT
GGTGGACTTGCCTTGGTTAGACGGAGAGTTGCCGCGGGTTGTGTTCAAGT
GTCGGAAGGGGGAATGGATTGCTCTATGTCAGAATGATAATCGTGCGTCC
TCCCTCCCTCTTCCTTCAACGAAGGAGCTGACTCAGAACAGATTGACAGT
TGCCCACATGACTGCAGTCGGAGAGGTTCCTCGACGCCCCGTACCAGTAA
CAAGGACAATAATAACATCGTCTTTATTAGCCAGGCTGTGGATGGAGAGG
CATGATACTCAGAGATATGCATGTCTAGCTTCTTTTTTGAGTCCGCGGGA
GAGTGACCATCTAAGTGCTGCTCTGTGCTGCAACAGGGCTCATTTCGTGA
CCGCGAGAGCAAAGGAGGAAGATGTGGTGCTGGTCCCTCTGTTGATTCCC
GAGGAAGAGGACGTGGGAGAGGTGGACGGAGGGACAGAAGGGGGGGGGTT
CTTCGAGATGAAGTGGCAAACGAGGAGGAAGACGAGAACGATGGTGCATA
TGGAGGTGGGGTTTGCTCCTTGTCAATTTATGCTTTATTTCCCTTTCCTG
TACGCGCTAATTCGCCTAGGGACTCTCGCTACTACCTCCTCGGCGTCCAC
ACGCGCAGCGACTGCTTTAGCAAAAAAAGAAAGAAAGGAGAGGCGCCAGA
TGCGGCGACAAGCGGGGGAGGAAGGGAAGGTGGAAGAAGAGGAGGAAGAG
TCGCCCCGCCCTACCTTATTGCTCAAGGCACGGAAATCACAGGTCTTGGT
GTTGGGAGGAAACATACAAGACGCACGTTTCGCCCTTCTTTTTGACTTGG
ACAAGTTTGTGTTTTGGCGACGGAGCGAGAGAACGGGGGGGGAGGGAGGA
GCAGGCTTGATGGTGACACCTACCGAGATTAGACGGATGGGCTTCAGGAC
TCATATGGGTCTGTGGAGGTTTGATTCAGGACAAGGGTTGGAGCTTCGAC
AGGCGTGGACGCTGATTGAGAGGGCAGATTTCGAGGTGCAGAAGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGACGAGGCGAGGGTGGTACACATCTCACC
AGTGGCCTTGACGGTGGGGAGGTTGGAGTTGGCAGTGCTGTGGCGGGTGG
TGGGGGTATTCGGTCGCAGCGTGACGCAGGCTCCTCCTGTAGAAGGCAGC
GACAAGCGCACCAATTACACCGCTGCCGCTATTTCTGCTGCCGGTGAAAG
TTCGGTTCGTAGCACTCCTGCAGTCGCTTGTGCGGAAGAGGAAGAGAAGG
AGTCACCAAACATGCGGCTGGTCTGTCCGTACCTCTACTTGTCATTCAAG
ACCCCTCGCTTTTCCCCTGCATCCTCCTCCTTTACACCTGGATCGTGGAC
AGGCGCTCACTCGTCCCTGTCTATGGCGCATGCTGTCGACACGGATACCC
TGGCATTTCATCTTAATCTGGAAACTTGTCATATACAAATAGGGACCTCC
TCAGGGCGAGTGGACGTGTCGGAAGTGATCGTTAAAGATTGTCGAAGCAC
CCACCCTTCCCTATCTTCTCCTCGTCGTCTCCCATCTCGTTCTCAGCACC
AACAACAGTCTTCTTCGTCTCCTCCACCTTCAGACAACTGTCAGCAGCAG
GTACCGCAACAGAAGCAACAGCAGCAGCAGCAGCAACAGCGGGGCCTCGC
CCTCCACCCCCGTCCTGAATTTATCTCGTCCTTCTCTGGCACGTCCGCCC
TTGGACTCACCTGGCACAAATCCCTCGGAGGAAGCACCGCTGATATCTCC
CTTCAACTCCAACCCTCCACTCTCCACCTGGACCCCCACTCCCTCGCTTT
GCTCTCTGCCCTCGGCGGATTCGTGAACCTGAATCTTGAGCTTGTGGCCG
CGAAAGACGCAGAAGAAGCACAGGCTACTATATCTGCGGCTGGTGGTTGT
GGTGGTGGTGGTGAGACCGCAGTCAGTGGAAAGCGGAATGTCCCCCTGTC
CCTGTTCCTCCTGCGACGGACCGAAACTGTCAAGCTGCTGACCGACCATT
TGAAAGTGGTTTTGGTCGGAGTCCCACCTCATCCTATTCATTCTGCTGCT
GCTGCTACTGCCGCTGTTGTCCCGGCTTCTTTGGAAATAGAAGTGGAACA
GCTCTTCAGTAGCTTGCGAACGGCGGGTTATAGCGCGGAGCAGTACCTCA
ATCTCGTCCAAGTCCGTGCTCACATTATCAGTTACGAGAGAGGGAGAGAC
GGAGAATGGCAGGGGGGAGGAAGTGGCCGTTTTTGGATAAAGCGAATGTG
TTTCTGA back to top Coding sequence (CDS) from alignment at chr6:406549..412855-
>NO06G01270.1 ID=NO06G01270.1|Name=NO06G01270.1|organism=Nannochloropsis oceanica|type=CDS|length=5823bp|location=Sequence derived from alignment at chr6:406549..412855- (Nannochloropsis oceanica) back to top