|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:388108..391669 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G01210.1 vs.
Match: PIA63100.1 (hypothetical protein AQUCO_00200848v1 [Aquilegia coerulea]) HSP 1 Score: 201.4 bits (511), Expect = 7.400e-48 Identity = 164/422 (38.86%), Postives = 219/422 (51.90%), Query Frame = 0
Query: 15 MSRTGKECYYAVLGVERSATDAEIKLAYRKLALKHHPDK----NVGDEGATAIFQRLQEANSVLSDKRERAWYDSHRDQILRGDDYDDDDEGEERSGGRGSGRRGGVGGAKRGKGAYVVNVWPFFSSSAFSGYGEGEGGFYAVYRELFVKIDVHE----REKGIPSPPIARGGGAAGGEGEAPGFGGPETGWGGVAAFYGYWGDFCSRLSFGWADEYREQDAPSRQVRRAMEKENKKSREAARKKYQEAIRALVEFVKKRDKRVMQRQVEVGREEAARVATEAKGAKLKAEEFKKEKERWLREQMQQWEEEESARREEEGIGGSAEFRLADEDEDSSSSSDREDGGEEGSSRRWKPRRGKKKKNAGVFECVVCDKKFKSEKQLNNHKQSRTHKRMVEELQAEFGDLEGLNEEDEEREEEVEE 429
MS + K C+Y +LG+ R + EI+ AYRKLAL+ HPDK V +E ATA FQ L A VLSD +ERAWYDSHR QIL + D + +S G V +++ +FS+S +SG+G+ GFY VY +LF KI E R+ G+ + AP G + + V AFYGYW F + + F W DEY + PSR+ RR ME+ENKK R+ ARK+Y E +R L FVK+RDKRV+ Q++ + E K + KA + K E E+ R +M +EE + A+ +EE I E +E+EDS KK + CVVC KKFKS+KQ NH+QS+ H+ V EL F E EE+EE EE VEE
Sbjct: 1 MSSSEKRCHYEILGINRDCSPEEIRSAYRKLALQLHPDKLIKTGVSEEQATAAFQELVNAYEVLSDPKERAWYDSHRSQIL----FSDSKSSKSKSTGS------------------VPDLYSYFSNSVYSGFGDSRKGFYKVYSDLFDKIYGQEILFARKLGLGEDSVK----------VAPLMGNLNSDYVQVTAFYGYWLRFSTVMDFCWVDEYDVLNGPSRKARRLMEEENKKLRKKARKEYNETVRGLAGFVKRRDKRVIDMQMK------RTLELEKKKEEEKARKKKAEWEKLQRSRM--YEESDWAKIDEEEIENVFE----EEEEDS------------------------KKNDVKELYCVVCSKKFKSDKQWKNHEQSKKHREKVAELGHTFRMEE--EEEEEEDEEAVEE 352
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G01210.1 ID=NO06G01210.1|Name=NO06G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=3185bp CCAAGGTGCTTTCGCTTCTTTCATTCTTGTGGGTTCAGCCATGGCGCTCA CAATGACATTAAAATGTAACACCGTTTTTCTCTTTCTCTTTGGTTTCCAA ACGAACTCTGCCCAAAGTTTTCTTGTTTCATCCAAGTTTGGAATTGAGCT AACACATCCCTGCTCTCATCCTACCCTGGCCTATAGAGCCTTGGTTGCTG CAGCAGCCTGCAGCGAGGGCCCATCTCGGACGGATCTTGCACGAGATCAA GAGCGTGTGGCTGATCAAATGGCATGAGATCCTTGCTTGAGGACATACCT CAACATTATAGAAGAGACCTTTGTGCCGGTTTTTGCGATCTTCGTGGCCA ATTGTATTTATCGTGGTCTGGGATGGGGGAGGTCGAGAGTATTGAACGCG AGCGACCGTTGATGGTATGATGATTGCTTCACTATGCGAAGCAATGCAAA CAACTAATAACACCACGATGTACGCTGCATGCACAGGGCCGGAGAGCAAG CAGCGGTATTGCGTTGTTTTATGTCTCGCACCGGGAAGGAATGTTACTAT GCTGTGTTGGGAGTGGAGAGGAGTGCCACGGACGCGGAGATCAAGCTCGC TTACAGAAAGCTTGCCCTCAAGCATCATCCGGATAAGAATGTAGGCGACG AGGGGGCAACAGCAATTTTTCAACGCCTCCAAGAGGCAAACTCCGTACTG AGTGACAAGCGGGAGCGGGCTTGGTATGATTCACATCGAGATCAGATACT CAGGGGGGACGACTATGATGATGATGACGAGGGGGAGGAGAGAAGTGGAG GGAGAGGAAGCGGAAGACGAGGAGGAGTCGGAGGAGCAAAACGGGGCAAG GGTGCATATGTCGTGAATGTCTGGCCTTTTTTCAGCAGTTCGGCTTTTAG CGGGTATGGGGAGGGAGAGGGGGGTTTCTATGCAGTCTACAGAGAATTGT TTGTAAAGATTGATGTCCACGAGAGGGAAAAAGGAATACCCTCACCGCCA ATCGCACGAGGAGGAGGAGCAGCAGGAGGGGAGGGAGAGGCACCTGGCTT TGGTGGGCCGGAGACGGGGTGGGGGGGGGTAGCTGCGTTTTATGGGTATT GGGGTGATTTCTGCTCGAGACTGTCGTTTGGATGGGCGGACGAGTACAGG GAGCAAGATGCCCCCTCGAGGCAAGTGAGGCGGGCGATGGAGAAGGAGAA TAAGAAAAGCAGGGAGGCTGCGCGGAAAAAGTACCAGGAGGCGATCCGGG CGCTGGTGGAGTTTGTGAAGAAGAGGGACAAGCGCGTGATGCAGCGGCAG GTCGAGGTAGGGAGGGAGGAAGCGGCACGGGTGGCGACGGAGGCGAAGGG GGCCAAGTTGAAAGCAGAGGAATTTAAGAAGGAGAAGGAGAGATGGCTGA GGGAGCAGATGCAGCAGTGGGAGGAGGAGGAGTCGGCGAGGAGAGAGGAG GAGGGGATAGGAGGATCGGCTGAATTTCGGTTGGCGGATGAGGACGAGGA CAGTAGTAGTAGCAGTGATAGGGAGGACGGGGGGGAGGAAGGGAGCAGTA GGAGGTGGAAGCCAAGGCGGGGAAAGAAGAAGAAGAATGCTGGGGTGTTC GAGTGTGTGGTGTGCGATAAGAAGTTTAAGAGTGAGAAGCAGCTGAACAA TCATAAGCAAAGCCGGACACACAAAAGGATGGTTGAGGAGCTGCAGGCGG AATTCGGAGATCTGGAAGGATTAAATGAGGAGGACGAGGAAAGGGAGGAG GAAGTGGAAGAGGGGAAAAAAGGGTCGATGTTTGAGTGTGTGGTGTGTGC GAAGGTGTTTTTGTCAGAGAAACAGCTGAAAACCCATAAGCAGAGTCGCA CGCATGGGAAGATGGTGGAGCAGCTGCAAGCGGAGTCGGAGGACTTGGAA GGGTTAAAGGAGAGTGAAGAAGGACAGGAGGAAGAAGAGGAGGAGGAGGA GGGGCTTGTGAGTGGCGAAATCGTTGCTGAAGACGGAAAAGGAGCGAAGG GATTGAGGGACGAGCGGGATGGGGAGGGAGTAGAGAAGGAAGATGGAAGC GAGGACTACGCCAAGGATGGCGTGCAGGACGAAGAGAAGGAGGAAGAAGA GGATGAGAAAGAGGATGAAGAGGGAGAGGAAAGCAGCAGTGACGATGGCG TGGAGCACGCAGCGCGTCAAGTGAATCGATTTGCCTTGGTCGATGATTCA TCATCGGAGGAGGATTAGGGTGGTCATGCAAACATGTGTGTAAGTGATGC TCTCTTTGGGGGAATAGCATGTCTACAGGCATTTGAATCAGGGAATGGGT GAAAGAGCTTTAGCCTTCTCGAGAAGCCAAGCTGGTTGTAAAATTGTACG CACACACATGAAGTGAAAATAAATATTTTATAGAGGTTGAACCCCCCCTA TCCGATTTATGCAAGTATTTACTTATTTTTGACTCCTATTAATTCACACA TAGACCTGCTAAGCAAATACTAAAACATTTGCCTCACATTCTCCCCATCC CTCCTTTCTCCTTAAACCACACGGTACCGCTCCGCGGGCCCACACCCGTC ACTCAATCCCTCCTCCACAATGTACATATCCTCAGCCTCTTCCCCATGCG GATTGATTTTTCGATCTTCAACGCATCGCTGCTGATACCACACATGACTA AGCACCCGTATAACAAGGCCTGGCACGTCTTCTTCTAATGCGTCTTGGTC CTCGTCGTAGAAGAGTTCTTCGGACTCCGGGCTCCGTCGACACAGCGGGT GAATGTGCATGAACTGATTAATGACGCCCAAACCAAGCAACCGTGTATCT CCGGGTGGCAACTGTCCTTTGCTGCGCTGAGCCTCGGTAATCCGGTACTC GACGACGTCGCCTTCGAGGAGCTCGTGAGGTGCGAAGGGCGAGGTTGAGG GAGTGATGGGTGTAGATGTGCTTTTGGGGTTTGAGGGTGTCGTCCCCCAC AGAGGAGAAAATGCTGAGACACGTGACCTCTCTGGTATGTGTCGCGTTGT CGAAGGTCTATGGGAGAAGCGCTGATGCCAACTGGGGGGGTGCGAGTGAC GTGCAGGTCGTGTATGAATGTCGAAATGGATTATCGTATTAACTTGGCTT TTCGGTTCTTACCTCGTGCTCGAGCCAACCAAGCTCAGCAGCAGCACCAG CAGCGCTGGAAGCTTCTCTGCCCTCATGTGCCTGT back to topprotein sequence of NO06G01210.1 >NO06G01210.1-protein ID=NO06G01210.1-protein|Name=NO06G01210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=580bp MHRAGEQAAVLRCFMSRTGKECYYAVLGVERSATDAEIKLAYRKLALKHH PDKNVGDEGATAIFQRLQEANSVLSDKRERAWYDSHRDQILRGDDYDDDD EGEERSGGRGSGRRGGVGGAKRGKGAYVVNVWPFFSSSAFSGYGEGEGGF YAVYRELFVKIDVHEREKGIPSPPIARGGGAAGGEGEAPGFGGPETGWGG VAAFYGYWGDFCSRLSFGWADEYREQDAPSRQVRRAMEKENKKSREAARK KYQEAIRALVEFVKKRDKRVMQRQVEVGREEAARVATEAKGAKLKAEEFK KEKERWLREQMQQWEEEESARREEEGIGGSAEFRLADEDEDSSSSSDRED GGEEGSSRRWKPRRGKKKKNAGVFECVVCDKKFKSEKQLNNHKQSRTHKR MVEELQAEFGDLEGLNEEDEEREEEVEEGKKGSMFECVVCAKVFLSEKQL KTHKQSRTHGKMVEQLQAESEDLEGLKESEEGQEEEEEEEEGLVSGEIVA EDGKGAKGLRDERDGEGVEKEDGSEDYAKDGVQDEEKEEEEDEKEDEEGE ESSSDDGVEHAARQVNRFALVDDSSSEED* back to topmRNA from alignment at chr6:388108..391669+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G01210.1 ID=NO06G01210.1|Name=NO06G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=3562bp|location=Sequence derived from alignment at chr6:388108..391669+ (Nannochloropsis oceanica) CCAAGGTGCTTTCGCTTCTTTCATTCTTGTGGGTTCAGCCATGGCGCTCA
CAATGACATTAAAATGTAACACCGTTTTTCTCTTTCTCTTTGGTTTCCAA
ACGAACTCTGCCCAAAGTTTTCTTGTTTCATCCAAGTTTGGAATTGAGCT
AACACATCCCTGCTCTCATCCTACCCTGGCCTATAGAGCCTTGGTTGCTG
CAGCAGCCTGCAGCGAGGGCCCATCTCGGACGGATCTTGCACGAGATCAA
GAGCGTGTGGCTGATCAAATGGCATGAGATCCTTGCTTGAGGACATACCT
CAACATTATAGAAGAGACCTTTGTGCCGGTTTTTGCGATCTTCGTGGCCA
ATTGTATTTATCGTGGTCTGGGATGGGGGAGGTCGAGAGTATTGAACGCG
AGCGACCGTTGATGGTATGATGATTGCTTCACTATGCGAAGCAATGCAAA
CAACTAATAACACCACGATGTACGCTGCATGCACAGGGCCGGAGAGCAAG
CAGCGGTATTGCGTTGTTTTATGTCTCGCACCGGGAAGGAATGTTACTAT
GCTGTGTTGGGAGTGGAGAGGTAAGGGCAAGATGGGATGGGATGCAGGGG
ACGTAAGCTGCTCTGGTACTTGACGCTGCGGCGACAGTATTTATGATAGA
GCACTAATGCTGCCATAGCAATAAGAAAGATTGGATGACACCCAAAGTAG
TCGCGAGGGCGTGCCCAGACCGTAAGGTGTGTTTAGTTTATCTCGATCCT
CCGCACGATCCCATCCTACCCTATGCGACTCCCACAACACTGACCCTGAA
CAGGAGTGCCACGGACGCGGAGATCAAGCTCGCTTACAGAAAGGTGCGTT
GCTTTTCATTCCACATGCGCCTTTCCTCCGCCCAGTCTGCCTCACCGCAG
CTGCAACTAAATCTGACACACATTCCCTTCCTCCCTCCCTCCCCCTACCT
TCCTCCCTCCCCCCTACCGTCCCTCGCTCTCCCGCAGCTTGCCCTCAAGC
ATCATCCGGATAAGAATGTAGGCGACGAGGGGGCAACAGCAATTTTTCAA
CGCCTCCAAGAGGCAAACTCCGTACTGAGTGACAAGCGGGAGCGGGCTTG
GTATGATTCACATCGAGATCAGATACTCAGGGGGGACGACTATGATGATG
ATGACGAGGGGGAGGAGAGAAGTGGAGGGAGAGGAAGCGGAAGACGAGGA
GGAGTCGGAGGAGCAAAACGGGGCAAGGGTGCATATGTCGTGAATGTCTG
GCCTTTTTTCAGCAGTTCGGCTTTTAGCGGGTATGGGGAGGGAGAGGGGG
GTTTCTATGCAGTCTACAGAGAATTGTTTGTAAAGATTGATGTCCACGAG
AGGGAAAAAGGAATACCCTCACCGCCAATCGCACGAGGAGGAGGAGCAGC
AGGAGGGGAGGGAGAGGCACCTGGCTTTGGTGGGCCGGAGACGGGGTGGG
GGGGGGTAGCTGCGTTTTATGGGTATTGGGGTGATTTCTGCTCGAGACTG
TCGTTTGGATGGGCGGACGAGTACAGGGAGCAAGATGCCCCCTCGAGGCA
AGTGAGGCGGGCGATGGAGAAGGAGAATAAGAAAAGCAGGGAGGCTGCGC
GGAAAAAGTACCAGGAGGCGATCCGGGCGCTGGTGGAGTTTGTGAAGAAG
AGGGACAAGCGCGTGATGCAGCGGCAGGTCGAGGTAGGGAGGGAGGAAGC
GGCACGGGTGGCGACGGAGGCGAAGGGGGCCAAGTTGAAAGCAGAGGAAT
TTAAGAAGGAGAAGGAGAGATGGCTGAGGGAGCAGATGCAGCAGTGGGAG
GAGGAGGAGTCGGCGAGGAGAGAGGAGGAGGGGATAGGAGGATCGGCTGA
ATTTCGGTTGGCGGATGAGGACGAGGACAGTAGTAGTAGCAGTGATAGGG
AGGACGGGGGGGAGGAAGGGAGCAGTAGGAGGTGGAAGCCAAGGCGGGGA
AAGAAGAAGAAGAATGCTGGGGTGTTCGAGTGTGTGGTGTGCGATAAGAA
GTTTAAGAGTGAGAAGCAGCTGAACAATCATAAGCAAAGCCGGACACACA
AAAGGATGGTTGAGGAGCTGCAGGCGGAATTCGGAGATCTGGAAGGATTA
AATGAGGAGGACGAGGAAAGGGAGGAGGAAGTGGAAGAGGGGAAAAAAGG
GTCGATGTTTGAGTGTGTGGTGTGTGCGAAGGTGTTTTTGTCAGAGAAAC
AGCTGAAAACCCATAAGCAGAGTCGCACGCATGGGAAGATGGTGGAGCAG
CTGCAAGCGGAGTCGGAGGACTTGGAAGGGTTAAAGGAGAGTGAAGAAGG
ACAGGAGGAAGAAGAGGAGGAGGAGGAGGGGCTTGTGAGTGGCGAAATCG
TTGCTGAAGACGGAAAAGGAGCGAAGGGATTGAGGGACGAGCGGGATGGG
GAGGGAGTAGAGAAGGAAGATGGAAGCGAGGACTACGCCAAGGATGGCGT
GCAGGACGAAGAGAAGGAGGAAGAAGAGGATGAGAAAGAGGATGAAGAGG
GAGAGGAAAGCAGCAGTGACGATGGCGTGGAGCACGCAGCGCGTCAAGTG
AATCGATTTGCCTTGGTCGATGATTCATCATCGGAGGAGGATTAGGGTGG
TCATGCAAACATGTGTGTAAGTGATGCTCTCTTTGGGGGAATAGCATGTC
TACAGGCATTTGAATCAGGGAATGGGTGAAAGAGCTTTAGCCTTCTCGAG
AAGCCAAGCTGGTTGTAAAATTGTACGCACACACATGAAGTGAAAATAAA
TATTTTATAGAGGTTGAACCCCCCCTATCCGATTTATGCAAGTATTTACT
TATTTTTGACTCCTATTAATTCACACATAGACCTGCTAAGCAAATACTAA
AACATTTGCCTCACATTCTCCCCATCCCTCCTTTCTCCTTAAACCACACG
GTACCGCTCCGCGGGCCCACACCCGTCACTCAATCCCTCCTCCACAATGT
ACATATCCTCAGCCTCTTCCCCATGCGGATTGATTTTTCGATCTTCAACG
CATCGCTGCTGATACCACACATGACTAAGCACCCGTATAACAAGGCCTGG
CACGTCTTCTTCTAATGCGTCTTGGTCCTCGTCGTAGAAGAGTTCTTCGG
ACTCCGGGCTCCGTCGACACAGCGGGTGAATGTGCATGAACTGATTAATG
ACGCCCAAACCAAGCAACCGTGTATCTCCGGGTGGCAACTGTCCTTTGCT
GCGCTGAGCCTCGGTAATCCGGTACTCGACGACGTCGCCTTCGAGGAGCT
CGTGAGGTGCGAAGGGCGAGGTTGAGGGAGTGATGGGTGTAGATGTGCTT
TTGGGGTTTGAGGGTGTCGTCCCCCACAGAGGAGAAAATGCTGAGACACG
TGACCTCTCTGGTATGTGTCGCGTTGTCGAAGGTCTATGGGAGAAGCGCT
GATGCCAACTGGGGGGGTGCGAGTGACGTGCAGGTCGTGTATGAATGTCG
AAATGGATTATCGTATTAACTTGGCTTTTCGGTTCTTACCTCGTGCTCGA
GCCAACCAAGCTCAGCAGCAGCACCAGCAGCGCTGGAAGCTTCTCTGCCC
TCATGTGCCTGT back to topCoding sequence (CDS) from alignment at chr6:388108..391669+ >NO06G01210.1 ID=NO06G01210.1|Name=NO06G01210.1|organism=Nannochloropsis oceanica|type=CDS|length=1740bp|location=Sequence derived from alignment at chr6:388108..391669+ (Nannochloropsis oceanica) ATGCACAGGGCCGGAGAGCAAGCAGCGGTATTGCGTTGTTTTATGTCTCG CACCGGGAAGGAATGTTACTATGCTGTGTTGGGAGTGGAGAGGAGTGCCA CGGACGCGGAGATCAAGCTCGCTTACAGAAAGCTTGCCCTCAAGCATCAT CCGGATAAGAATGTAGGCGACGAGGGGGCAACAGCAATTTTTCAACGCCT CCAAGAGGCAAACTCCGTACTGAGTGACAAGCGGGAGCGGGCTTGGTATG ATTCACATCGAGATCAGATACTCAGGGGGGACGACTATGATGATGATGAC GAGGGGGAGGAGAGAAGTGGAGGGAGAGGAAGCGGAAGACGAGGAGGAGT CGGAGGAGCAAAACGGGGCAAGGGTGCATATGTCGTGAATGTCTGGCCTT TTTTCAGCAGTTCGGCTTTTAGCGGGTATGGGGAGGGAGAGGGGGGTTTC TATGCAGTCTACAGAGAATTGTTTGTAAAGATTGATGTCCACGAGAGGGA AAAAGGAATACCCTCACCGCCAATCGCACGAGGAGGAGGAGCAGCAGGAG GGGAGGGAGAGGCACCTGGCTTTGGTGGGCCGGAGACGGGGTGGGGGGGG GTAGCTGCGTTTTATGGGTATTGGGGTGATTTCTGCTCGAGACTGTCGTT TGGATGGGCGGACGAGTACAGGGAGCAAGATGCCCCCTCGAGGCAAGTGA GGCGGGCGATGGAGAAGGAGAATAAGAAAAGCAGGGAGGCTGCGCGGAAA AAGTACCAGGAGGCGATCCGGGCGCTGGTGGAGTTTGTGAAGAAGAGGGA CAAGCGCGTGATGCAGCGGCAGGTCGAGGTAGGGAGGGAGGAAGCGGCAC GGGTGGCGACGGAGGCGAAGGGGGCCAAGTTGAAAGCAGAGGAATTTAAG AAGGAGAAGGAGAGATGGCTGAGGGAGCAGATGCAGCAGTGGGAGGAGGA GGAGTCGGCGAGGAGAGAGGAGGAGGGGATAGGAGGATCGGCTGAATTTC GGTTGGCGGATGAGGACGAGGACAGTAGTAGTAGCAGTGATAGGGAGGAC GGGGGGGAGGAAGGGAGCAGTAGGAGGTGGAAGCCAAGGCGGGGAAAGAA GAAGAAGAATGCTGGGGTGTTCGAGTGTGTGGTGTGCGATAAGAAGTTTA AGAGTGAGAAGCAGCTGAACAATCATAAGCAAAGCCGGACACACAAAAGG ATGGTTGAGGAGCTGCAGGCGGAATTCGGAGATCTGGAAGGATTAAATGA GGAGGACGAGGAAAGGGAGGAGGAAGTGGAAGAGGGGAAAAAAGGGTCGA TGTTTGAGTGTGTGGTGTGTGCGAAGGTGTTTTTGTCAGAGAAACAGCTG AAAACCCATAAGCAGAGTCGCACGCATGGGAAGATGGTGGAGCAGCTGCA AGCGGAGTCGGAGGACTTGGAAGGGTTAAAGGAGAGTGAAGAAGGACAGG AGGAAGAAGAGGAGGAGGAGGAGGGGCTTGTGAGTGGCGAAATCGTTGCT GAAGACGGAAAAGGAGCGAAGGGATTGAGGGACGAGCGGGATGGGGAGGG AGTAGAGAAGGAAGATGGAAGCGAGGACTACGCCAAGGATGGCGTGCAGG ACGAAGAGAAGGAGGAAGAAGAGGATGAGAAAGAGGATGAAGAGGGAGAG GAAAGCAGCAGTGACGATGGCGTGGAGCACGCAGCGCGTCAAGTGAATCG ATTTGCCTTGGTCGATGATTCATCATCGGAGGAGGATTAG back to top
|