NO06G00470.1, NO06G00470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00470.1
Unique NameNO06G00470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1591
Alignment locationchr6:198499..200392 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:198499..200392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO06G00470.1 vs.
Match: XP_005852506.1 (lipoyl(octanoyl) transferase [Nannochloropsis gaditana CCMP526]; EKU23325.1 lipoyl(octanoyl) transferase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 412.9 bits (1060), Expect = 8.100e-112
Identity = 205/279 (73.48%), Postives = 237/279 (84.95%), Query Frame = 0 
Query:    4 AALAAGAMRMGLRRRVATLNIQGLVPYASAWQLQRELVAQRIAWQKEERAGYDAMLVLEHTPVYTMGRSAKPEDLKFPREEMEEEKKGGKKGRGFEVYTSDRGGQVTWHGPGQVVMYPIIDLTHHKRDLRWYVRGMEEVVLRVLASHGVTGQRDEKHTGVWVEEKGGKGREEGGGGLIKVAAIGVSASRWITCHGLALNVNPDLKAFDAIVPCGVKDRRVGCLKDFLSAEKAAKLTTAQVRYELMEAFEEVFTSMELCVQEKKGPMLWQVEEVVLVDEE 283
            A    G MR GLRRRVATLNIQGLVPY+ AWQLQ++LVAQRI WQKEE++G+DAMLVLEH+PVYT+GRSAKP D+KFP  E       G+ GRGFEV+ +DRGGQVTWHGPGQ+V+YP++DLTHHK+DLRWYVRG+EEVVLRVLA HGV GQRDEKHTGVWV+E+G +G E     L KVAAIGVSASRW+TCHGLALNV+PDL+AF++IVPCGV+DRRVGCLK  LS   AA+LTTAQVRYELMEAFE+VF SMELCVQEKK  +   V+E+VL DEE
Sbjct:    3 AGTLVGTMRAGLRRRVATLNIQGLVPYSLAWQLQQKLVAQRIVWQKEEQSGFDAMLVLEHSPVYTLGRSAKPGDVKFPLVEGT-----GQGGRGFEVFKTDRGGQVTWHGPGQIVIYPVVDLTHHKKDLRWYVRGLEEVVLRVLALHGVEGQRDEKHTGVWVKEQGPEGEE-----LTKVAAIGVSASRWVTCHGLALNVDPDLRAFESIVPCGVRDRRVGCLKTLLSPHVAAELTTAQVRYELMEAFEDVFPSMELCVQEKKDQLKGTVDEMVLEDEE 271
The following BLAST results are available for this feature:
BLAST of NO06G00470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852506.18.100e-11273.48lipoyl(octanoyl) transferase [Nannochloropsis gadi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00470NO06G00470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00470.1NO06G00470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00470.1.cds1NO06G00470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00470.1.cds2NO06G00470.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00470.1.cds3NO06G00470.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00470.1.cds4NO06G00470.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00470.1 ID=NO06G00470.1|Name=NO06G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1591bp
AAAACGCGGCATGCTTGAGTCCTGGATGTGATTGTTTGTAGGTTGTAGAG
GGTTAGAAATGCCGGTTGCAGGGAAAGCTTCTAGGGGTGAGGGCGGGGTG
GGAAGGCTATGCAGACACGGCATTGAGAGCGTCTGTGACCCAAAAAGTGA
CACTTTCTTACGTTCAACAAGAGGAACTCATACTTTGTGAATCTGTCTGA
GTCTATCGCTGTCCCCCGGCACATGTCTGGGCCTGTCGGTGTCCACTCGA
AACACAAATGTGTGAGGATATTTGCGATGTTGCCTTCGTTGATGCTGGCG
ATATCGACCTCCTGCCTCTCGTATTTCACACAATTCCCCCAACCACCAAC
CACACTGCGCAGGCGGCAGCCACGAGCTAGCCATGACGGCAGCCGCACTA
GCAGCAGGTGCTATGCGGATGGGTTTGCGCCGGCGGGTGGCAACGCTCAA
CATCCAAGGTCTTGTCCCTTACGCCTCAGCCTGGCAGCTGCAGCGTGAGC
TTGTCGCCCAACGCATCGCCTGGCAAAAGGAGGAACGAGCCGGGTACGAC
GCTATGCTAGTGCTCGAGCACACGCCCGTCTATACCATGGGTCGATCTGC
CAAGCCGGAGGACTTAAAATTCCCCCGGGAAGAGATGGAGGAAGAGAAGA
AGGGAGGGAAGAAGGGAAGGGGATTTGAAGTCTACACATCAGATAGAGGG
GGACAAGTCACATGGCACGGGCCTGGGCAAGTAGTCATGTACCCCATCAT
TGATCTCACCCACCACAAGAGGGATTTAAGGTGGTATGTTCGTGGCATGG
AAGAAGTAGTACTACGAGTGCTGGCCTCCCATGGAGTCACCGGACAAAGG
GACGAGAAACACACGGGTGTGTGGGTAGAGGAGAAGGGAGGGAAAGGGAG
GGAGGAAGGAGGAGGGGGGCTGATAAAGGTGGCGGCGATTGGGGTGTCTG
CGAGTAGATGGATTACTTGCCACGGGTTGGCGCTGAATGTGAACCCGGAC
CTGAAGGCGTTTGATGCGATAGTTCCCTGTGGAGTAAAGGATCGACGGGT
TGGGTGCCTTAAGGATTTCTTGTCTGCTGAAAAGGCGGCCAAATTGACCA
CTGCTCAAGTCCGCTACGAGCTGATGGAGGCATTCGAGGAGGTGTTCACG
TCAATGGAATTGTGTGTACAGGAGAAAAAGGGGCCAATGCTATGGCAGGT
GGAGGAGGTGGTGCTTGTGGACGAAGAGGATCGGGAGGAATGTATGTGAT
AAGCGGTTCTCTTGCGAGAAGAGGGAGCAGGAGAAGTACACGGATTTACC
TCTTGATTCCTTCCCTCCCTCCCTCGATGGATGTCTGTGTGTTGAAAGGG
CAAGCTGTTGGGAGGGAAACAGGGAGTGGTGTCGCGAGAGGTGGCGGGTA
CAAAGGAATGTATCCAGAGTGAGAAGAGACTGGGAGCGAATGTAATTAGT
TACATATCGGATTACAAACTTGAAAGTTAGACAGGCGAAAACTGAAGTCG
CGAGGGGATATGCATATGGAAGAGGCTGCAAAAAAAAGAAAAAGATCAAT
AAGCCAATACAACCACATAGTCGGACAAGGTAAAATAAACT
back to top

protein sequence of NO06G00470.1

>NO06G00470.1-protein ID=NO06G00470.1-protein|Name=NO06G00470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MTAAALAAGAMRMGLRRRVATLNIQGLVPYASAWQLQRELVAQRIAWQKE
ERAGYDAMLVLEHTPVYTMGRSAKPEDLKFPREEMEEEKKGGKKGRGFEV
YTSDRGGQVTWHGPGQVVMYPIIDLTHHKRDLRWYVRGMEEVVLRVLASH
GVTGQRDEKHTGVWVEEKGGKGREEGGGGLIKVAAIGVSASRWITCHGLA
LNVNPDLKAFDAIVPCGVKDRRVGCLKDFLSAEKAAKLTTAQVRYELMEA
FEEVFTSMELCVQEKKGPMLWQVEEVVLVDEEDREECM*
back to top

mRNA from alignment at chr6:198499..200392-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00470.1 ID=NO06G00470.1|Name=NO06G00470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1894bp|location=Sequence derived from alignment at chr6:198499..200392- (Nannochloropsis oceanica)
AAAACGCGGCATGCTTGAGTCCTGGATGTGATTGTTTGTAGGTTGTAGAG
GGTTAGAAATGCCGGTTGCAGGGAAAGCTTCTAGGGGTGAGGGCGGGGTG
GGAAGGCTATGCAGACACGGCATTGAGAGCGTCTGTGACCCAAAAAGTGA
CACTTTCTTACGTTCAACAAGAGGAACTCATACTTTGTGAATCTGTCTGA
GTCTATCGCTGTCCCCCGGCACATGTCTGGGCCTGTCGGTGTCCACTCGA
AACACAAATGTGTGAGGATATTTGCGATGTTGCCTTCGTTGATGCTGGCG
ATATCGACCTCCTGCCTCTCGTATTTCACACAATTCCCCCAACCACCAAC
CACACTGCGCAGGCGGCAGCCACGAGCTAGCCATGACGGCAGCCGCACTA
GCAGCAGGTGCTATGCGGATGGGTTTGCGCCGGCGGGTGGCAACGCTCAA
CATCCAAGGTAAGTTGCAGCAGTCGATGACGAGACTTCTGTTTGGGATCG
ATGACACGTAACTCTTCTTCCCCACGCTTTTCTATCTCACGCATGCACAG
GTCTTGTCCCTTACGCCTCAGCCTGGCAGCTGCAGCGTGAGCTTGTCGCC
CAACGCATCGCCTGGCAAAAGGAGGAACGGTACGTGTCCTCTCTCTCCCC
CCTTTCCCTTTCCCTGTTTGTTCCCAATCACGACGTCACCCTCACCTTTC
CTCCCTCCCTCCCTTTCTTCCTTAAGAGCCGGGTACGACGCTATGCTAGT
GCTCGAGCACACGCCCGTCTATACCATGGGTCGATCTGCCAAGCCGGAGG
ACTTAAAATTCCCCCGGGAAGAGATGGAGGAAGAGAAGAAGGGAGGGAAG
AAGGGAAGGGGATTTGAAGTCTACACATCAGATAGAGGGGGACAAGTCAC
ATGGCACGGGCCTGGGCAAGTAGTCATGTACCCCATCATTGATCTCACCC
ACCACAAGAGGGATTTAAGGTGGTATGTTCGTGGCATGGAAGAAGTAGTA
CTACGAGTGCTGGCCTCCCATGGAGTCACCGGACAAAGGGACGAGAAACA
CACGGGTGTGTGGGTAGAGGAGAAGGGAGGGAAAGGGAGGGAGGAAGGAG
GAGGGGGGCTGATAAAGGTGGCGGCGATTGGGGTGTCTGCGAGTAGATGG
ATTACTTGCCACGGGTTGGCGCTGAATGTGAACCCGGACCTGAAGGCGTT
TGATGCGATAGTTCCCTGTGGAGTAAAGGATCGACGGGTTGGGTAAGTCT
ACTTTCATATTATACTATTATACGTACTTGATTTATTTTTCATGAGTATC
CTTTGACTTGTTCATTTATATACGTATTTATGCGTTTTATTCATTCACTC
ATATAGGTGCCTTAAGGATTTCTTGTCTGCTGAAAAGGCGGCCAAATTGA
CCACTGCTCAAGTCCGCTACGAGCTGATGGAGGCATTCGAGGAGGTGTTC
ACGTCAATGGAATTGTGTGTACAGGAGAAAAAGGGGCCAATGCTATGGCA
GGTGGAGGAGGTGGTGCTTGTGGACGAAGAGGATCGGGAGGAATGTATGT
GATAAGCGGTTCTCTTGCGAGAAGAGGGAGCAGGAGAAGTACACGGATTT
ACCTCTTGATTCCTTCCCTCCCTCCCTCGATGGATGTCTGTGTGTTGAAA
GGGCAAGCTGTTGGGAGGGAAACAGGGAGTGGTGTCGCGAGAGGTGGCGG
GTACAAAGGAATGTATCCAGAGTGAGAAGAGACTGGGAGCGAATGTAATT
AGTTACATATCGGATTACAAACTTGAAAGTTAGACAGGCGAAAACTGAAG
TCGCGAGGGGATATGCATATGGAAGAGGCTGCAAAAAAAAGAAAAAGATC
AATAAGCCAATACAACCACATAGTCGGACAAGGTAAAATAAACT
back to top

Coding sequence (CDS) from alignment at chr6:198499..200392-

>NO06G00470.1 ID=NO06G00470.1|Name=NO06G00470.1|organism=Nannochloropsis oceanica|type=CDS|length=867bp|location=Sequence derived from alignment at chr6:198499..200392- (Nannochloropsis oceanica)
ATGACGGCAGCCGCACTAGCAGCAGGTGCTATGCGGATGGGTTTGCGCCG
GCGGGTGGCAACGCTCAACATCCAAGGTCTTGTCCCTTACGCCTCAGCCT
GGCAGCTGCAGCGTGAGCTTGTCGCCCAACGCATCGCCTGGCAAAAGGAG
GAACGAGCCGGGTACGACGCTATGCTAGTGCTCGAGCACACGCCCGTCTA
TACCATGGGTCGATCTGCCAAGCCGGAGGACTTAAAATTCCCCCGGGAAG
AGATGGAGGAAGAGAAGAAGGGAGGGAAGAAGGGAAGGGGATTTGAAGTC
TACACATCAGATAGAGGGGGACAAGTCACATGGCACGGGCCTGGGCAAGT
AGTCATGTACCCCATCATTGATCTCACCCACCACAAGAGGGATTTAAGGT
GGTATGTTCGTGGCATGGAAGAAGTAGTACTACGAGTGCTGGCCTCCCAT
GGAGTCACCGGACAAAGGGACGAGAAACACACGGGTGTGTGGGTAGAGGA
GAAGGGAGGGAAAGGGAGGGAGGAAGGAGGAGGGGGGCTGATAAAGGTGG
CGGCGATTGGGGTGTCTGCGAGTAGATGGATTACTTGCCACGGGTTGGCG
CTGAATGTGAACCCGGACCTGAAGGCGTTTGATGCGATAGTTCCCTGTGG
AGTAAAGGATCGACGGGTTGGGTGCCTTAAGGATTTCTTGTCTGCTGAAA
AGGCGGCCAAATTGACCACTGCTCAAGTCCGCTACGAGCTGATGGAGGCA
TTCGAGGAGGTGTTCACGTCAATGGAATTGTGTGTACAGGAGAAAAAGGG
GCCAATGCTATGGCAGGTGGAGGAGGTGGTGCTTGTGGACGAAGAGGATC
GGGAGGAATGTATGTGA
back to top
Synonyms
Publications