NO06G00370.1, NO06G00370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00370.1
Unique NameNO06G00370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1724
Alignment locationchr6:156914..158637 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:156914..158637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G00370.1 vs.
Match: EWM30045.1 (hypothetical protein Naga_101600g1 [Nannochloropsis gaditana])

HSP 1 Score: 125.6 bits (314), Expect = 1.900e-25
Identity = 84/203 (41.38%), Postives = 118/203 (58.13%), Query Frame = 0 
Query:    1 MRRALSLVALGVTLALTAAQTVPTLILTSIKALDTTRANKDQWSVKGYFNDPDGNAVPAIDDTGLSALLLNGNEDTVSETNFDADDCRLLNNDKGVICKVTGARFSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVLRRQEFENTLSSPLIAAFGID---GVGEIFDVNYKCTE--KVGTRATKFLCTPGTAPPTTAPTA 199
            MRR LSL+ALGVTL +TA Q      L ++K  + ++  +DQWS+KG  ++P  N VPAI   GL+  LL+ + D ++ T F A +C+LL N +GV CK  GAR S+KRT+R PK A +   ++ N+ +   YY  SG+ RR +F   L  P++    +    G   +  +   C+E  K   R TK  CTPG AP T APTA
Sbjct:    1 MRRILSLLALGVTLVMTAGQE---FTLKNVKVAERSKTARDQWSMKGNLDNPAMNVVPAIGQLGLTVNLLDVSLDPLASTAFAATNCKLLRNGRGVRCKKMGARVSIKRTRR-PKGAKV---KSSNSNSTGGYYGASGMFRRLQF---LQDPVVTPLTVQVVVGSTTLPAIVSTCSERTKGAGRITKITCTPGPAPVTPAPTA 193
The following BLAST results are available for this feature:
BLAST of NO06G00370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30045.11.900e-2541.38hypothetical protein Naga_101600g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00370NO06G00370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00370.1NO06G00370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00370.1.cds1NO06G00370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00370.1 ID=NO06G00370.1|Name=NO06G00370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1724bp
AAACAAACCACACACACACAAGAAAAACCAAAAATACCAAAAAACAGACA
AGTACCCACTCCTCTTTCTCCATTGCGTTTGAAAACTTGCTCTCTTACTC
TTCCTCTGGTGTGCTTTTCCGCTAGTGTATTGTGCTTTTCAAAGTTTGTG
GTCGGCCTCTTCGGGGCAATGGCTTCTTACCGTTGAATCTAACGCCTTGC
AGGACGCGACCTAAGGTAGGGCCTTCGAGCTCAAGTACGGGGCGACCCCT
ACTCTTATCCTCCCTCTTCTAGCATTACCCCTGACATGGTCAAAGAATTG
CAATCAACGCCGAGAGTATGGTTGTTTGTGTTATCTCTTCCACGGGTGTG
GGGCGGTGCGAGGCGACATTGTGACGGCCGCGCGCACCCGTCCCAGGGAG
GCCACTCTGTTACGGATCAATGTTTACCCCGCCCCTTTCTCTTTGATAAC
TACTCGGGGCCCCTCTTGGTCTTGTGCCGATTTTGTGCTAAGCACAATCC
GTGCAGTGTTGACGACGTAACTTCGTCAATACTGCACGCTTTCTCAACCG
ACAACCACACTCAGTCAAAGCACTCAGCACTCTTCGATCAATTTATAATA
TACGTCTCACGCAGTTACAGCAAAAAAGCCTTCCCTCGCGATATAACATG
CGTCGTGCTCTTTCTCTGGTTGCCCTTGGCGTCACCCTCGCCCTCACGGC
GGCTCAGACTGTGCCGACGTTGATTCTTACCTCCATCAAGGCACTTGACA
CGACCAGGGCAAACAAGGACCAATGGAGTGTCAAGGGCTACTTCAACGAT
CCTGATGGGAATGCTGTCCCGGCTATTGATGACACTGGCTTGTCCGCGCT
GCTTTTAAACGGGAACGAAGACACAGTGAGTGAAACGAACTTTGACGCGG
ATGATTGCAGACTGCTCAACAACGATAAGGGAGTCATTTGCAAGGTAACG
GGCGCCCGCTTCTCGCTCAAGAGGACTAAGAGAGTACCCAAGGACGCCAT
GCTGGAGGTGCAGAGGAACCGCAACACGACCACCGCCTCTTCCTACTACA
GGGTTTCGGGTGTTCTCCGCCGTCAGGAGTTCGAAAACACTCTTTCGTCG
CCTCTGATTGCTGCCTTCGGCATTGATGGCGTAGGCGAGATCTTTGATGT
CAATTATAAGTGCACTGAGAAAGTAGGAACCAGGGCCACCAAGTTCCTCT
GCACGCCTGGCACCGCCCCGCCTACTACTGCCCCTACTGCTACCCCTACT
CCTGCCCCTTCTGTTACCTAAAGGCGGTCGCATGGTAATTGGGTATCTAC
TGTCTAAAGGCAGTCGTGTGGTAGATGAGCATCCGCTTGGCGTCCTAATC
TGGCAAGGGACGCTATAAGTCCTGTTGTCTCTTGTGTATTCACGTCGATC
TGTCCATGTGCGCGACCATATATCTGTCTGTTTTGTCGTGTCTATGTGTT
GTATATGCGCTGTGTTTTGTATGTGTGGATTCCCTTGCTTGAGCGCCACT
TGTGTCGTGGGCTTTTGGTTTCTTGACCGTCTTGCAGAGGCCAGTTACGG
ACTTGTGTGTGTGTTGTGTTGTGTATGCGTACCTTCTGTGAGCTTCTAGT
GCAAGGTTCTATGTAGGAAGATCGATTGCGGAGTTCCCCTGTGAAACCTC
AGCTTCTTATGTACCAGCCTTTACAAATAAAGAAAATGCTTCGCGCAGGC
GATTATTTGTGATAAAACATGGTA
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protein sequence of NO06G00370.1

>NO06G00370.1-protein ID=NO06G00370.1-protein|Name=NO06G00370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MRRALSLVALGVTLALTAAQTVPTLILTSIKALDTTRANKDQWSVKGYFN
DPDGNAVPAIDDTGLSALLLNGNEDTVSETNFDADDCRLLNNDKGVICKV
TGARFSLKRTKRVPKDAMLEVQRNRNTTTASSYYRVSGVLRRQEFENTLS
SPLIAAFGIDGVGEIFDVNYKCTEKVGTRATKFLCTPGTAPPTTAPTATP
TPAPSVT*
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mRNA from alignment at chr6:156914..158637+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00370.1 ID=NO06G00370.1|Name=NO06G00370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1724bp|location=Sequence derived from alignment at chr6:156914..158637+ (Nannochloropsis oceanica)
AAACAAACCACACACACACAAGAAAAACCAAAAATACCAAAAAACAGACA
AGTACCCACTCCTCTTTCTCCATTGCGTTTGAAAACTTGCTCTCTTACTC
TTCCTCTGGTGTGCTTTTCCGCTAGTGTATTGTGCTTTTCAAAGTTTGTG
GTCGGCCTCTTCGGGGCAATGGCTTCTTACCGTTGAATCTAACGCCTTGC
AGGACGCGACCTAAGGTAGGGCCTTCGAGCTCAAGTACGGGGCGACCCCT
ACTCTTATCCTCCCTCTTCTAGCATTACCCCTGACATGGTCAAAGAATTG
CAATCAACGCCGAGAGTATGGTTGTTTGTGTTATCTCTTCCACGGGTGTG
GGGCGGTGCGAGGCGACATTGTGACGGCCGCGCGCACCCGTCCCAGGGAG
GCCACTCTGTTACGGATCAATGTTTACCCCGCCCCTTTCTCTTTGATAAC
TACTCGGGGCCCCTCTTGGTCTTGTGCCGATTTTGTGCTAAGCACAATCC
GTGCAGTGTTGACGACGTAACTTCGTCAATACTGCACGCTTTCTCAACCG
ACAACCACACTCAGTCAAAGCACTCAGCACTCTTCGATCAATTTATAATA
TACGTCTCACGCAGTTACAGCAAAAAAGCCTTCCCTCGCGATATAACATG
CGTCGTGCTCTTTCTCTGGTTGCCCTTGGCGTCACCCTCGCCCTCACGGC
GGCTCAGACTGTGCCGACGTTGATTCTTACCTCCATCAAGGCACTTGACA
CGACCAGGGCAAACAAGGACCAATGGAGTGTCAAGGGCTACTTCAACGAT
CCTGATGGGAATGCTGTCCCGGCTATTGATGACACTGGCTTGTCCGCGCT
GCTTTTAAACGGGAACGAAGACACAGTGAGTGAAACGAACTTTGACGCGG
ATGATTGCAGACTGCTCAACAACGATAAGGGAGTCATTTGCAAGGTAACG
GGCGCCCGCTTCTCGCTCAAGAGGACTAAGAGAGTACCCAAGGACGCCAT
GCTGGAGGTGCAGAGGAACCGCAACACGACCACCGCCTCTTCCTACTACA
GGGTTTCGGGTGTTCTCCGCCGTCAGGAGTTCGAAAACACTCTTTCGTCG
CCTCTGATTGCTGCCTTCGGCATTGATGGCGTAGGCGAGATCTTTGATGT
CAATTATAAGTGCACTGAGAAAGTAGGAACCAGGGCCACCAAGTTCCTCT
GCACGCCTGGCACCGCCCCGCCTACTACTGCCCCTACTGCTACCCCTACT
CCTGCCCCTTCTGTTACCTAAAGGCGGTCGCATGGTAATTGGGTATCTAC
TGTCTAAAGGCAGTCGTGTGGTAGATGAGCATCCGCTTGGCGTCCTAATC
TGGCAAGGGACGCTATAAGTCCTGTTGTCTCTTGTGTATTCACGTCGATC
TGTCCATGTGCGCGACCATATATCTGTCTGTTTTGTCGTGTCTATGTGTT
GTATATGCGCTGTGTTTTGTATGTGTGGATTCCCTTGCTTGAGCGCCACT
TGTGTCGTGGGCTTTTGGTTTCTTGACCGTCTTGCAGAGGCCAGTTACGG
ACTTGTGTGTGTGTTGTGTTGTGTATGCGTACCTTCTGTGAGCTTCTAGT
GCAAGGTTCTATGTAGGAAGATCGATTGCGGAGTTCCCCTGTGAAACCTC
AGCTTCTTATGTACCAGCCTTTACAAATAAAGAAAATGCTTCGCGCAGGC
GATTATTTGTGATAAAACATGGTA
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Coding sequence (CDS) from alignment at chr6:156914..158637+

>NO06G00370.1 ID=NO06G00370.1|Name=NO06G00370.1|organism=Nannochloropsis oceanica|type=CDS|length=624bp|location=Sequence derived from alignment at chr6:156914..158637+ (Nannochloropsis oceanica)
ATGCGTCGTGCTCTTTCTCTGGTTGCCCTTGGCGTCACCCTCGCCCTCAC
GGCGGCTCAGACTGTGCCGACGTTGATTCTTACCTCCATCAAGGCACTTG
ACACGACCAGGGCAAACAAGGACCAATGGAGTGTCAAGGGCTACTTCAAC
GATCCTGATGGGAATGCTGTCCCGGCTATTGATGACACTGGCTTGTCCGC
GCTGCTTTTAAACGGGAACGAAGACACAGTGAGTGAAACGAACTTTGACG
CGGATGATTGCAGACTGCTCAACAACGATAAGGGAGTCATTTGCAAGGTA
ACGGGCGCCCGCTTCTCGCTCAAGAGGACTAAGAGAGTACCCAAGGACGC
CATGCTGGAGGTGCAGAGGAACCGCAACACGACCACCGCCTCTTCCTACT
ACAGGGTTTCGGGTGTTCTCCGCCGTCAGGAGTTCGAAAACACTCTTTCG
TCGCCTCTGATTGCTGCCTTCGGCATTGATGGCGTAGGCGAGATCTTTGA
TGTCAATTATAAGTGCACTGAGAAAGTAGGAACCAGGGCCACCAAGTTCC
TCTGCACGCCTGGCACCGCCCCGCCTACTACTGCCCCTACTGCTACCCCT
ACTCCTGCCCCTTCTGTTACCTAA
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Synonyms
Publications