NO06G00190.4, NO06G00190.4 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G00190.4
Unique Name	NO06G00190.4
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1757
Alignment location	chr6:78485..82319 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:78485..82319 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO06G00190.4 vs.
Match: POM58021.1 (Hypothetical protein PHPALM_37393, partial [Phytophthora palmivora var. palmivora])

HSP 1 Score: 164.1 bits (414), Expect = 1.100e-36
Identity = 79/179 (44.13%), Postives = 123/179 (68.72%), Query Frame = 0

Query:  240 EDEWQYVSSVLHNVTQLQEGRDLL--RRRTTNLLGAVLPQLESRNPIRRRGVACTIRNCCFEEGDHYYYIHEMALIAHLLFPLMGSDRHLDADERQALHPLVLRGGSNKQREPDEAVRTALLETLLLFCSTRSSREALRRQGVYAVVREADKSEPSEENSEIIYKIVNFLQRDEETRHP 417
            +DE+QYV+++L N++QL++GRD L   R++T+L GA+LPQL+S N +RRRGV   ++N CF+  +H+Y   ++ +  H++  L G +  LD D++  ++P+V   G  K+RE D  VR A ++ LLL C+TR+ R+ LRR+ VY ++R+A   EP EE  + IYK+V+FL RDEE   P
Sbjct:  179 DDEYQYVANILANISQLEQGRDFLLKMRQSTSLAGALLPQLKSPNVVRRRGVTAALKNLCFDSDNHFYLYDQLDIPTHMMVLLAGPEE-LDEDDKMGMNPVVYSQGDKKKREHDRLVRLAAVDCLLLLCTTRNGRKELRRKKVYPIIRDAHLVEPDEEIGDQIYKLVDFLIRDEEGEEP 356

The following BLAST results are available for this feature:

BLAST of NO06G00190.4 vs.

BLAST of NO06G00190.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
POM58021.1	1.100e-36	44.13	Hypothetical protein PHPALM_37393, partial [Phytop...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO06G00190	NO06G00190	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO06G00190.4	NO06G00190.4-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO06G00190.4.cds1	NO06G00190.4.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G00190.4.cds2	NO06G00190.4.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G00190.4.cds3	NO06G00190.4.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G00190.4.cds4	NO06G00190.4.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G00190.4.cds5	NO06G00190.4.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G00190.4.cds6	NO06G00190.4.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G00190.4.cds7	NO06G00190.4.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G00190.4.cds8	NO06G00190.4.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G00190.4.cds9	NO06G00190.4.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G00190.4.cds10	NO06G00190.4.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G00190.4.cds11	NO06G00190.4.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr6:78485..82319-
coding sequence from alignment at chr6:78485..82319-

mRNA sequence

>NO06G00190.4 ID=NO06G00190.4|Name=NO06G00190.4|organism=Nannochloropsis oceanica|type=mRNA|length=1757bp
TGGGGTCGTGTGTAGTTGGGACTGGGAAATGCTTGTTGTTGTTGGCCATG
AGCATTTCAACTTATCCAAGGAACTTTCTCTCGGACAGGGCTGGCGATGC
TGCTACTGCTGCGTCGACTGATTGTTACGTGACAAGGTGCAAGACACAAG
TTTTCCTTGTAGTACGACGCGCACCTGACCCCAGGCGCACACACCCACAG
GAAGGAAAGGCACAAAAAAAGGCTCCGAGGACATGTGCTTTTGTAGCCGT
TGCCGAAAATCATCCTACAGCCACGCACCCCTCTCTAGCTTGCTGATATC
CTCCCATCCATTCCCTCCCTCTTGACAGCATTAAACCCCAAAACCATGCC
ACTTGTCCTCCCCGACGGCCTCGATTCCCTGGAGGAGCTCGCGACCTTTC
TCAAACACCCGGTACCGGACGTCAGGGCCATGGCGGCGCAAATTGCTCTA
TCCATTTCTGCCAGCGAGGAGGGACGCCGGGGCCTGGTGGAGGCTCAAGT
GCTTCCCACTCTCTGCCGGTTGTCGGCCGACACGGACAAGGTGGCTGAGC
CAGCCATCAGCGCGATGATCAACCTGTGTGCCGATGAGTTACCCTCCGTA
GTGCAAGAGCTCTTGAAACGCGGCATCGTCGACCGCCTTGTCGAGACGGT
GACGTCGGAGGACTGCTCCTGCAGAGACAGGGCCTTGATGCTTCTTGCCA
ACGTTTCCGCTACAACCACGGGGGCAAAGCGGGTGATGCAGCAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGGAAACAC
TGACAGCAGAGACCAGGAGAAAAGGAAGAAGAAGGAGGAGGAGGAGGAAG
AGGACGACAAGCCTGCGGCAGGCACCACTCTTCCCTCCTCCTCCTCCTCC
ACCTCCCTCCCTCCCTCTCGAGGGAAGAAGGAAACGACGACAGTAATAAA
GGAGAAGAAGGAGAGGAAGGAAAAGAAAGAGAAAACCACGTCCCTATTGA
CGGGATTGCACATCCGGCGGCTGCTCCGGTGTTTCTTGTCCCACTACGAC
CCGGCCGCGGAGGAGGATGAGTGGCAGTACGTTTCCTCGGTGCTTCACAA
CGTGACTCAGCTCCAAGAAGGACGAGACCTGCTGAGGAGGAGGACGACGA
ACCTCCTCGGCGCAGTACTACCGCAGCTGGAGTCCCGAAATCCCATTCGC
CGACGGGGCGTGGCCTGCACCATCCGAAACTGCTGCTTTGAGGAAGGCGA
TCATTACTACTACATCCACGAGATGGCACTAATTGCCCACCTCCTCTTTC
CCTTGATGGGTTCCGACCGCCACTTGGATGCAGATGAACGTCAAGCCCTC
CATCCCCTCGTCCTCCGAGGGGGCTCCAACAAGCAGAGAGAGCCCGACGA
GGCAGTACGCACGGCTTTACTAGAGACGTTGTTGCTCTTCTGCTCCACAC
GGTCGTCGAGAGAGGCCCTCCGGAGGCAAGGTGTCTACGCCGTCGTCCGA
GAAGCCGACAAGTCCGAGCCCTCAGAAGAGAACAGTGAAATCATCTACAA
GATCGTCAATTTCCTGCAACGCGACGAAGAGACGAGACATCCTGCTGCCA
ACGATGGAAAGGAGGGATCGACCGAGGGCGGGAGGGAGGAAGGGTTGAAT
GAGGGACCGGACGAGGACGGGAGGGAGGGAGGGGAGGCGAGCTTGCCGAG
GCCTTTGTCTGATTTGAAGGAGCGGGCGGAGGTAAGGAATTAAGTAAGGG
AGGGAGG

protein sequence of NO06G00190.4

>NO06G00190.4-protein ID=NO06G00190.4-protein|Name=NO06G00190.4|organism=Nannochloropsis oceanica|type=polypeptide|length=466bp
MPLVLPDGLDSLEELATFLKHPVPDVRAMAAQIALSISASEEGRRGLVEA
QVLPTLCRLSADTDKVAEPAISAMINLCADELPSVVQELLKRGIVDRLVE
TVTSEDCSCRDRALMLLANVSATTTGAKRVMQQEEEEEEEEEEKEEEEEG
NTDSRDQEKRKKKEEEEEEDDKPAAGTTLPSSSSSTSLPPSRGKKETTTV
IKEKKERKEKKEKTTSLLTGLHIRRLLRCFLSHYDPAAEEDEWQYVSSVL
HNVTQLQEGRDLLRRRTTNLLGAVLPQLESRNPIRRRGVACTIRNCCFEE
GDHYYYIHEMALIAHLLFPLMGSDRHLDADERQALHPLVLRGGSNKQREP
DEAVRTALLETLLLFCSTRSSREALRRQGVYAVVREADKSEPSEENSEII
YKIVNFLQRDEETRHPAANDGKEGSTEGGREEGLNEGPDEDGREGGEASL
PRPLSDLKERAEVRN*

mRNA from alignment at chr6:78485..82319-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO06G00190.4 ID=NO06G00190.4|Name=NO06G00190.4|organism=Nannochloropsis oceanica|type=mRNA|length=3835bp|location=Sequence derived from alignment at chr6:78485..82319- (Nannochloropsis oceanica)
TGGGGTCGTGTGTAGTTGGGACTGGGAAATGCTTGTTGTTGTTGGCCATG
AGCATTTCAACTTATCCAAGGAACTTTCTCTCGGACAGGGCTGGCGATGC
TGCTACTGCTGCGTCGACTGATTGTTACGTGACAAGGTGCAAGACACAAG
TTTTCCTTGTAGTACGACGCGCACCTGACCCCAGGCGCACACACCCACAG
GAAGGAAAGGCACAAAAAAAGGCTCCGAGGACATGTGCTTTTGTAGCCGT
TGCCGAAAATCATCCTACAGCCACGCACCCCTCTCTAGCTTGCTGATATC
CTCCCATCCATTCCCTCCCTCTTGACAGCATTAAACCCCAAAACCATGCC
ACTTGTCCTCCCCGACGGCCTCGATTCCCTGGAGGAGCTCGCGACCTTTC
TCAAACACCCGGTACCGGACGTCAGGGCCATGGCGGCGCAAATTGCTCTA
TCCATTTCTGCCAGCGAGGTAAAGGACAGCGGAGAGGAGGGAGGAAAGAG
GGAGGGGGTAAGGAAAGGATCGAAGCTCGAAGGGAGCAAGCCATAAATGT
GATTGGAATACCAAAAAAAGGCGTAGAAGGATTGCGGGGGCGGTTCAACC
GGAGCTCCCTTTGCAGCTAGGCTCTAAAGGAATGGACCGATGCTCTGGAG
GGGGGAGGTTAAGACAAGTCGAGTATTTTTTTCCCCTCTCTCTGTCTCTC
ACTCTTTCTCTCTCTCGATCGATTTCGTCTTAACTCTCACAGGAGGGACG
CCGGGGCCTGGTGGAGGCTCAAGTGCTTCCCACTCTCTGCCGGTTGTCGG
CCGACACGGACAAGGTGACGGAGAGGGAGTGAGGGAAGGAAGGAGGGAGA
AAGGGAGGGAGGGGGAGAGGGTTGCTCCTGCCGTCCACCCATCGATCGTC
CTCCTCATTCTCCCATTTTTCCCTCCTTCCCCCTCATTTTGCCTCAGGTG
GCTGAGCCAGCCATCAGCGCGATGATCAACCTGTGTGCCGATGAGTTACC
CTCCGTAGTGCAAGAGCTCTTGAAACGCGGCATCGTCGACCGCCTTGTCG
AGGTGCCTCCCTCCTTTCCGCCCTCCTTCCCTCTTTACCTCTTTCCCTCC
TTGCCTCCCTCCCTTCGCCACCTGTGTAGCACCGACTAACCGTTGCTCCT
CACTGTGGAAACACTCCCTCCCTCCTTCCCTCCCTCCCTCCATCTTTCCC
TCCCTAGACGGTGACGTCGGAGGACTGCTCCTGCAGAGACAGGGCCTTGA
TGCTTCTTGCCAACGTTTCCGCTACAACCACGGGGGCAAAGCGGGTGATG
CAGGTAGGGAGGGAGGGAGGGAGGGAAGGAGGGAAGGAAGGAAGGAAGGA
GGGAAGGAAGGAAGGAAGGAGGGAGGGAGGGAGTAGCTGACTACCCATTT
TTCGAGCAATCACTCATATGCGTCCATGCATCCATTACATCTATACACTG
TATTTATACATACTCCCTTCCTCTTCTTTTCTATATCTTTTTCTTCTTTC
TCTCGCCGATTCTTTTGTACTTGCCTGACCCCCAGCAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGGAAACACTGACAG
CAGAGACCAGGAGAAAAGGAAGAAGAAGGAGGAGGAGGAGGAAGAGGACG
ACAAGCCTGCGGCAGGCACCACTCTTCCCTCCTCCTCCTCCTCCACCTCC
CTCCCTCCCTCTCGAGGGAAGAAGGAAACGACGACAGTAATAAAGGAGAA
GAAGGAGAGGAAGGAAAAGAAAGAGAAAACCACGTCCCTATTGACGGGAT
TGCACATCCGGCGGCTGCTCCGGTGTTTCTTGTCCCACTACGACCCGGCC
GCGGAGGAGGATGAGGTGAGGAGGGAGGGAGGGAAGGAAGAAGGAAAGGT
GGAAGAGAAAGGCGGCCATGAGGGGCCGAAGACGCGTCGAGTTGTGCGTA
GAGGCCAACACTCCCTTCCTTCCTTCCTTCCTTCCTCCCTCCCTCCCTCC
CTCAGTGGCAGTACGTTTCCTCGGTGCTTCACAACGTGACTCAGCTCCAA
GAAGGACGAGACCTGCTGAGGAGGAGGACGACGAACCTCCTCGGCGCAGT
ACTACCGCAGGTAGAGAGGGGGGGAGGGAGGGAGGGAGGGAGGGAGGAGA
TATGTACTCTCTGTTGTGATTCCATTTCGCGGCCCTAGTCCGCGCTTATT
CTTATTCCCTCCCTCCATCCCTCCATCCCTCCTTCCCTCCCTCCCTCTCT
CCCTCCTACCCTCCCCCCTTCCCTCCCTCCTTCCTCCCTTCCCTCCGTCC
CTCCCTCCCTCCCTATCTAGCTGGAGTCCCGAAATCCCATTCGCCGACGG
GGCGTGGCCTGCACCATCCGAAACTGCTGCTTTGAGGAAGGTAGGGAGGG
AGGGAGGGTAGGAGGGAGGAAGGTAGGGAGGGAGAGAGGGTAGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGAGACAGTGACTGTATCTT
CGCTTCAAAATAATCGCGAACACATATCCTCCCGCCCTCCCTCTTTCCCT
CCCTCCTCGCCCCCTCCACCAGGCGATCATTACTACTACATCCACGAGAT
GGCACTAATTGCCCACCTCCTCTTTCCCTTGATGGGTTCCGACCGCCACT
TGGATGCAGATGAACGTCAAGGTAGGGAGGGAGGAAGGGGAGGAGGGAAG
GAAGGAAGGAGAGGGAGGGAGGGAAGGAAGGAAGGAGGGAGGGAGGGAGT
GAAGGAGGGAGGGAAGGAGGAGGGGAGAAAGGGAGGGCCTCCTGATCAAC
AGCCAACCACCACCGCAATTATATGTCTCTTCTTCTATCTTCCACGCCCT
CCCTCTCTCGCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCACC
CTACCCTCTCCTCCCCTGCCTTCTTGAAGCCCTCCATCCCCTCGTCCTCC
GAGGGGGCTCCAACAAGCAGAGAGAGCCCGACGAGGCAGTACGCACGGCT
TTACTAGAGACGTTGTTGCTCTTCTGCTCCACACGGTCGTCGAGGTAGGT
GGGAAGGGAGGGAGGGAGGGAGGGGTATTGTTCAAATAAGAGTAGGGAGG
ATCTACTCATTCATACATTCGTTCATATCAATTCATTTATTTATATATAT
ATATATATTTATATTTATTTATTTATCTATACATACATACGTACATTTTT
ACTTTATAGATTTATAACTTTATTCATATGATCATTAACTATCCTATGTA
TTCATTCATTTATTGATTTATTTATCGATGTTTTCATTTATTAATTTATT
CATTTGATCATTAATTATCCGGTAGAGAGGCCCTCCGGAGGCAAGGTGTC
TACGCCGTCGTCCGAGAAGCCGACAAGTCCGAGCCCTCAGAAGAGAACAG
TGAAATCATCTACAAGATCGTCAATTTCCTGCAACGGTACGCCAGCCCTC
CCTCCCTCCTTCCCTTCCTCCCTCTCTTCCTGGAAACCAAGCATTTCCAA
GATTATCTATTTTCTGCAACAGCAAGCCTTCCCTTCCTCCCCTCCCTTCC
TTCCCTCCCACCCTACCACCCTCCTCCCTCTTCACCCTTTCTATTTCTCC
TTTTGTGTGCCCCAGCATATTGCCCACCCTCCCTCCCTCCCTTCCCCAGC
GACGAAGAGACGAGACATCCTGCTGCCAACGATGGAAAGGAGGGATCGAC
CGAGGGCGGGAGGGAGGAAGGGTTGAATGAGGGACCGGACGAGGACGGGA
GGGAGGGAGGGGAGGCGAGCTTGCCGAGGCCTTTGTCTGATTTGAAGGAG
CGGGCGGAGGTAAGGAATTAAGTAAGGGAGGGAGG

Coding sequence (CDS) from alignment at chr6:78485..82319-

>NO06G00190.4 ID=NO06G00190.4|Name=NO06G00190.4|organism=Nannochloropsis oceanica|type=CDS|length=1398bp|location=Sequence derived from alignment at chr6:78485..82319- (Nannochloropsis oceanica)
ATGCCACTTGTCCTCCCCGACGGCCTCGATTCCCTGGAGGAGCTCGCGAC
CTTTCTCAAACACCCGGTACCGGACGTCAGGGCCATGGCGGCGCAAATTG
CTCTATCCATTTCTGCCAGCGAGGAGGGACGCCGGGGCCTGGTGGAGGCT
CAAGTGCTTCCCACTCTCTGCCGGTTGTCGGCCGACACGGACAAGGTGGC
TGAGCCAGCCATCAGCGCGATGATCAACCTGTGTGCCGATGAGTTACCCT
CCGTAGTGCAAGAGCTCTTGAAACGCGGCATCGTCGACCGCCTTGTCGAG
ACGGTGACGTCGGAGGACTGCTCCTGCAGAGACAGGGCCTTGATGCTTCT
TGCCAACGTTTCCGCTACAACCACGGGGGCAAAGCGGGTGATGCAGCAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGGA
AACACTGACAGCAGAGACCAGGAGAAAAGGAAGAAGAAGGAGGAGGAGGA
GGAAGAGGACGACAAGCCTGCGGCAGGCACCACTCTTCCCTCCTCCTCCT
CCTCCACCTCCCTCCCTCCCTCTCGAGGGAAGAAGGAAACGACGACAGTA
ATAAAGGAGAAGAAGGAGAGGAAGGAAAAGAAAGAGAAAACCACGTCCCT
ATTGACGGGATTGCACATCCGGCGGCTGCTCCGGTGTTTCTTGTCCCACT
ACGACCCGGCCGCGGAGGAGGATGAGTGGCAGTACGTTTCCTCGGTGCTT
CACAACGTGACTCAGCTCCAAGAAGGACGAGACCTGCTGAGGAGGAGGAC
GACGAACCTCCTCGGCGCAGTACTACCGCAGCTGGAGTCCCGAAATCCCA
TTCGCCGACGGGGCGTGGCCTGCACCATCCGAAACTGCTGCTTTGAGGAA
GGCGATCATTACTACTACATCCACGAGATGGCACTAATTGCCCACCTCCT
CTTTCCCTTGATGGGTTCCGACCGCCACTTGGATGCAGATGAACGTCAAG
CCCTCCATCCCCTCGTCCTCCGAGGGGGCTCCAACAAGCAGAGAGAGCCC
GACGAGGCAGTACGCACGGCTTTACTAGAGACGTTGTTGCTCTTCTGCTC
CACACGGTCGTCGAGAGAGGCCCTCCGGAGGCAAGGTGTCTACGCCGTCG
TCCGAGAAGCCGACAAGTCCGAGCCCTCAGAAGAGAACAGTGAAATCATC
TACAAGATCGTCAATTTCCTGCAACGCGACGAAGAGACGAGACATCCTGC
TGCCAACGATGGAAAGGAGGGATCGACCGAGGGCGGGAGGGAGGAAGGGT
TGAATGAGGGACCGGACGAGGACGGGAGGGAGGGAGGGGAGGCGAGCTTG
CCGAGGCCTTTGTCTGATTTGAAGGAGCGGGCGGAGGTAAGGAATTAA

Synonyms

Publications